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1. Full Text The genome of the mesopolyploid crop species Brassica rapa
by Wang, Xiaowu and Wang, Hanzhong and Sun, Rifei and Bonnema, A.B and Brassica rapa Genome Sequencing Project Consortium and The Brassica rapa Genome Sequencing Project Consortium
Nature Genetics, ISSN 1061-4036, 2011, Volume 43, Issue 10, pp. 1035 - 1039
We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein... 
PLANT ARABIDOPSIS-THALIANA | EVOLUTION | DIVERSIFICATION | ALIGNMENT | GENETICS | SEQUENCE | GENETICS & HEREDITY | TRIPLICATION | REPRESSOR | LINEAGES | DUPLICATED GENES | Gene Duplication | Polyploidy | Genes, Plant | Molecular Sequence Annotation | Molecular Sequence Data | Genome, Plant | Phylogeny | Brassica rapa - genetics | Sequence Analysis, DNA | Arabidopsis - genetics | Chromosomes, Artificial, Bacterial - genetics | Contig Mapping | Chromosomes, Plant - genetics | Evolution, Molecular | Rural development | Councils | Research & development--R&D | Genomics | Crops | Technological change | Science | Genetics | Evolution | Genomes | Artificial chromosomes | sequence | genetics | triplication | repressor | duplicated genes | lineages | evolution | diversification | alignment | plant arabidopsis-thaliana
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2. Full Text Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa
by Feng Cheng and Terezie Mandáková and Jian Wu and Qi Xie and Martin A. Lysak and Xiaowu Wang
The Plant Cell, ISSN 1040-4651, 5/2013, Volume 25, Issue 5, pp. 1541 - 1554
The genus Brassica includes several important agricultural and horticultural crops. Their current genome structures were shaped by whole-genome triplication... 
Biological taxonomies | Diploidy | Hexaploidy | RESEARCH ARTICLES | Genomics | Genes | Centromeres | Evolution | Genomes | Chromosomes | Karyotype | PHYLOGENY | ARABIDOPSIS-THALIANA | CHROMOSOME-NUMBER REDUCTION | RECONSTRUCTION | BIOCHEMISTRY & MOLECULAR BIOLOGY | RAPHANUS-SATIVUS | PLANT SCIENCES | CELL BIOLOGY | BLOCKS | SPECIES BRASSICACEAE | SEQUENCE | KARYOTYPE EVOLUTION | MAP | Translocation, Genetic | Arabidopsis Proteins - genetics | Polyploidy | Genome, Plant - genetics | Synteny | Arabidopsis - classification | Chromosome Mapping | Phylogeny | Brassica rapa - genetics | Arabidopsis - genetics | Plant Proteins - genetics | Brassica rapa - classification | Centromere - genetics | Brassica - genetics | Chromosomes, Plant - genetics | Brassica - classification | Evolution, Molecular | Physiological aspects | Genetic aspects | Research | Chinese cabbage | Plant genetics
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3. Full Text Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea
by Cheng, Feng and Sun, Rifei and Hou, Xilin and Zheng, Hongkun and Zhang, Fenglan and Zhang, Yangyong and Liu, Bo and Liang, Jianli and Zhuang, Mu and Liu, Yunxia and Liu, Dongyuan and Wang, Xiaobo and Li, Pingxia and Liu, Yumei and Lin, Ke and Bucher, Johan and Zhang, Ningwen and Wang, Yan and Wang, Hui and Deng, Jie and Liao, Yongcui and Wei, Keyun and Zhang, Xueming and Fu, Lixia and Hu, Yunyan and Liu, Jisheng and Cai, Chengcheng and Zhang, Shujiang and Zhang, Shifan and Li, Fei and Zhang, Hui and Zhang, Jifang and Guo, Ning and Liu, Zhiyuan and Liu, Jin and Sun, Chao and Ma, Yuan and Zhang, Haijiao and Cui, Yang and Freeling, Micheal R and Borm, Theo and Bonnema, Guusje and Wu, Jian and Wang, Xiaowu
Nature Genetics, ISSN 1061-4036, 2016, Volume 48, Issue 10, pp. 1218 - 1224
Brassica species, including crops such as cabbage, turnip and oilseed, display enormous phenotypic variation. Brassica genomes have all undergone a... 
Genetic Variation | Species Specificity | Brassica - genetics | Selection, Genetic | Crops, Agricultural - genetics | Genome, Plant | Brassica rapa - genetics | Sequence Analysis, DNA | DNA, Plant | Studies | Crops | Population | Genomes | Diversification | Experiments | Evolution & development | Laboratorium voor Plantenveredeling | WUR PB Groei & Ontwikkeling | WUR Plant Breeding | Plant Breeding | EPS | PBR Groei & Ontwikkeling | Laboratory of Plant Breeding | PBR Breeding for growth and development
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4. Full Text Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa
by Cheng, F and Wu, J and Fang, L and Sun, S and Liu, B and Lin, K and Bonnema, A.B and Wang, Xiaowu
PLoS One, ISSN 1932-6203, 2012, Volume 7, Issue 5, p. e36442
Polyploidization, both ancient and recent, is frequent among plants. A ‘‘two-step theory’’ was proposed to explain the meso-triplication of the Brassica ‘‘A’’... 
ARABIDOPSIS-THALIANA | GENOME SEQUENCE | EVOLUTION | DNA METHYLATION | BIOLOGY | PLANTS | SHORT READ ALIGNMENT | DUPLICATION | POLYPLOIDS | Brassica napus - genetics | Genome, Plant - genetics | Brassica rapa - genetics | Chromosomes, Plant - genetics | Evolution, Molecular | Genomes | Methylation | Gene expression | Genes | Genomics | Plants (botany) | Fractionation | Polyploidy | Laboratories | Bias | Corn | Mutation rates | Bees | Gene sequencing | Genotype & phenotype | Brassica | DNA methylation | Epigenetics | Evolution | Flowers & plants | Mutation | Bioinformatics | Historical metallurgy | Vegetables | Frameshift mutation | Evolutionary genetics | dna methylation | short read alignment | polyploids | plants | arabidopsis-thaliana | genome sequence | evolution | duplication
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5. Full Text Sequence-Level Analysis of the Diploidization Process in the Triplicated FLOWERING LOCUS C Region of Brassica rapa
by Tae-Jin Yang and Jung sun Kim and Soo-Jin Kwon and Ki-Byung Lim and Beom-Soon Choi and Jin-A. Kim and Mina Jin and Jee Young Park and Myung-Ho Lim and Ho-Il Kim and Yong Pyo Lim and Jason Jongho Kang and Jin-Han Hong and Chang-Bae Kim and Jong Bhak and Ian Bancroft and Beom-Seok Park
The Plant Cell, ISSN 1040-4651, 6/2006, Volume 18, Issue 6, pp. 1339 - 1347
Strong evidence exists for polyploidy having occurred during the evolution of the tribe Brassiceae. We show evidence for the dynamic and ongoing diploidization... 
Diploidy | Polyploidy | Genes | Genomics | Evolution | Evolutionary genetics | Genomes | Plants | Chromosomes | Plant cells | ARABIDOPSIS-THALIANA | DNA-SEQUENCES | PHYLOGENETIC ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT SCIENCES | CELL BIOLOGY | NAPUS | GENE | GENOME EVOLUTION | MICROSATELLITES | DUPLICATION | MAP | OLERACEA | Gene Duplication | Conserved Sequence - genetics | Genome, Plant - genetics | Molecular Sequence Data | Chromosome Mapping | Brassica rapa - genetics | Sequence Analysis, DNA | Genes, Plant - genetics | DNA Transposable Elements - genetics | Chromosomes, Plant - genetics | Evolution, Molecular | Sequence Deletion - genetics | Arabidopsis thaliana | Plant chromosomes | Genetic aspects | Turnips | Research
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6. Full Text Preferential Retention of Circadian Clock Genes during Diploidization following Whole Genome Triplication in Brassica rapa
by Ping Lou and Jian Wu and Feng Cheng and Laura G. Cressman and Xiaowu Wang and C. Robertson McClung
The Plant Cell, ISSN 1040-4651, 6/2012, Volume 24, Issue 6, pp. 2415 - 2426
Much has been learned about the architecture and function of the circadian clock of Arabidopsis thaliana, a model for plant circadian rhythms. Circadian... 
Fractionation | Diploidy | Genes | Genomics | Phylogenetics | Evolution | Genomes | Plants | Angiosperms | Plant cells | ARABIDOPSIS-THALIANA | DNA-SEQUENCES | DUPLICATIONS | PHYLOGENETIC ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT SCIENCES | CELL BIOLOGY | LAND PLANTS | EVOLUTION | PSEUDO-RESPONSE-REGULATORS | TRANSCRIPTION FACTOR | FLOWERING TIME | EXPRESSION | Protein Structure, Tertiary | Arabidopsis Proteins - genetics | Multigene Family | Circadian Rhythm Signaling Peptides and Proteins - genetics | Gene Fusion | Circadian Clocks - genetics | Gene Dosage | Genes, myb | Genome, Plant | Phylogeny | Transcription Factors - genetics | Brassica rapa - genetics | DNA-Binding Proteins - genetics | Transcription Factors - metabolism | Plant Proteins - genetics | Gene Deletion | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Evolution, Molecular | Circadian rhythms | Brassica | Plant genetics | Physiological aspects | Genetic aspects | Research
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7. Full Text Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa
by Wang, Jun and Lydiate, Derek J and Parkin, Isobel A.P and Falentin, Cyril and Delourme, Régine and Carion, Pierre W.C and King, Graham J
BMC Genomics, ISSN 1471-2164, 01/2011, Volume 12, Issue 1, pp. 101 - 101
Background: The large number of genetic linkage maps representing Brassica chromosomes constitute a potential platform for studying crop traits and genome... 
QUANTITATIVE TRAIT LOCI | DNA-SEQUENCES | FLANKING SEQUENCES | THALIANA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | CROSSING-OVER | OILSEED RAPE | RECOMBINATION RATES | CONSENSUS MAP | GENETIC-MAP | GENOME | Arabidopsis - genetics | Brassica napus - genetics | Genome, Plant - genetics | Genotype | Chromosome Mapping | Genetic Linkage - genetics | Brassica rapa - genetics | Arabidopsis thaliana | Rape (Plant) | Genetic aspects | Linkage (Genetics) | Research | Genetics | Genomes | Algorithms | Maps | Genomics
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8. Full Text Morphology, Carbohydrate Composition and Vernalization Response in a Genetically Diverse Collection of Asian and European Turnips (Brassica rapa subsp. rapa)
by Zhang, N and Jianjun Zhao, Jianjun and Lens, F and Visser, de, J and Menamo, T and Fang, W and Xiao, D and Bucher, J and Basnet, R.K and Lin, K and Cheng, F and Wang, X and Bonnema, A.B
PLoS One, ISSN 1932-6203, 2014, Volume 9, Issue 12, p. e114241
Brassica rapa displays enormous morphological diversity, with leafy vegetables, turnips and oil crops. Turnips (Brassica rapa subsp. rapa) represent one of the... 
FLOWERING-TIME | POTATO | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | STORAGE ORGAN DEVELOPMENT | RAPHANUS-SATIVUS L | CAMBIAL ACTIVITY | VAR. RAPA | ROOTS | SUCROSE METABOLIZING ENZYMES | TRANSCRIPTOME ANALYSIS | Europe | Humans | Plant Roots - genetics | Brassica rapa - anatomy & histology | Brassica rapa - genetics | Genetic Variation | Phenotype | Carbohydrates - chemistry | Plant Leaves - genetics | Asia | Carbohydrates - isolation & purification | Brassica rapa - chemistry | Crops, Agricultural | Flowers - genetics | Quantitative Trait Loci - genetics | Dextrose | Vegetables | Glucose | Carbohydrate composition | Turnips | Sucrose | Potatoes | Horticulture | Genomes | Single-nucleotide polymorphism | Tubers | Genotype & phenotype | Leaves | Germplasm | Plant tissues | Genetics | Flowering | Flowers & plants | Shoots | Plant sciences | Sugars | Sugar | Carbohydrates | Subpopulations | Starch | Admixtures | Population structure | Fructose | Studies | Brassica | Vernalization | Morphology | Collection | tuber development | sugar-beet | organ development | arabidopsis-thaliana | flowering-time | gene-expression | raphanus-sativus l | transcriptome analysis | storage root-formation | sucrose metabolizing enzymes
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9. Full Text Anthocyanin biosynthetic genes in Brassica rapa
by Guo, Ning and Cheng, Feng and Wu, Jian and Liu, Bo and Zheng, Shuning and Liang, Jianli and Wang, Xiaowu
BMC Genomics, ISSN 1471-2164, 06/2014, Volume 15, Issue 1, pp. 426 - 426
Background: Anthocyanins are a group of flavonoid compounds. As a group of important secondary metabolites, they perform several key biological functions in... 
Comparative genomics | Anthocyanin biosynthetic genes | Whole genome duplication | Brassica rapa | Cruciferae | COLORFUL MODEL | ARABIDOPSIS-THALIANA | PHENYLPROPANOID BIOSYNTHESIS | DIFFERENTIAL REGULATION | NEGATIVE REGULATOR | SYNTHASE | FLAVONOID BIOSYNTHESIS | GENETICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMISTRY | MYB | GENETICS & HEREDITY | Gene Duplication | Brassica rapa - metabolism | Anthocyanins - biosynthesis | Chromosome Mapping | Genome, Plant | Phylogeny | Brassica rapa - genetics | Arabidopsis - metabolism | Arabidopsis - genetics | Sequence Homology | Plant Proteins - genetics | Metabolic Networks and Pathways | Anthocyanins - genetics | Gene Expression Regulation, Plant | Anthocyanin | Physiological aspects | Brassica | Genetic aspects | Biosynthesis | Heart diseases | Analysis | Proteins | Horticulture | Genes | Genomics | Phylogenetics | Genomes | Data bases
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10. Full Text The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa
by Marie-Hélène Balesdent and Isabelle Fudal and Bénédicte Ollivier and Pascal Bally and Jonathan Grandaubert and Frédérique Eber and Anne-Marie Chèvre and Martine Leflon and Thierry Rouxel
New Phytologist, ISSN 0028-646X, 4/2013, Volume 198, Issue 3, pp. 887 - 898
Phytopathogenic fungi frequently contain dispensable chromosomes, some of which contribute to host range or pathogenicity. In , the stem canker agent of... 
Full papers | Phenotypes | Segregation | Genes | Gout | Evolutionary genetics | Genetic loci | Genomes | Oilseeds | Plants | Chromosomes | Brassica rapa | Leptosphaeria maculans | fitness | Brassica napus | avirulence gene | effector | dispensable or B chromosomes | Avirulence gene | Dispensable or B chromosomes | Effector | Fitness | LENGTH POLYMORPHISMS | MATING-TYPE | GENOME | MEIOTIC BEHAVIOR | PLANT SCIENCES | PATHOGENICITY | IN-FIELD POPULATIONS | MEIOSIS | RESISTANCE | AVRLM1 | STEM CANKER | Brassica napus - genetics | Plant Diseases - microbiology | Meiosis | Brassica rapa - genetics | Brassica rapa - microbiology | Ascomycota - pathogenicity | Chromosomes, Fungal - genetics | Host-Pathogen Interactions - genetics | Virulence - genetics | Ascomycota - genetics | Cloning, Molecular | Genes, Fungal | Plant Diseases - genetics | Brassica napus - microbiology | Disease Resistance - genetics | Crosses, Genetic | Life Sciences | Agricultural sciences
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11. Full Text Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa
by Tong, Chaobo and Wang, Xiaowu and Yu, Jingyin and Wu, Jian and Li, Wanshun and Huang, Junyan and Dong, Caihua and Hua, Wei and Liu, Shengyi
BMC Genomics, ISSN 1471-2164, 10/2013, Volume 14, Issue 1, pp. 689 - 689
Background: The species Brassica rapa (2n=20, AA) is an important vegetable and oilseed crop, and serves as an excellent model for genomic and evolutionary... 
Alternative splicing | Brassica rapa | RNA-seq | Transcriptome | ALTERNATIVE SPLICING PATTERNS | WHOLE-GENOME | EUKARYOTES | NETWORK ANALYSIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENOME-WIDE ANALYSIS | POPULUS-TRICHOCARPA | DUPLICATION | ARABIDOPSIS | DIVERGENCE | FACTOR GENES | Alternative Splicing - genetics | Molecular Sequence Annotation | RNA, Messenger - genetics | 3' Untranslated Regions - genetics | 5' Untranslated Regions - genetics | Gene Expression Profiling | Statistics as Topic | Transcriptome - genetics | Brassica rapa - genetics | RNA, Messenger - metabolism | Sequence Analysis, DNA | Organ Specificity - genetics | Genes, Plant - genetics | Gene Expression Regulation, Plant | Genetic aspects | Research | Nucleotide sequencing | Cruciferae | DNA sequencing | Cellular signal transduction | Genomes | Genes | Studies | Software | Gene expression | Genomics
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12. Full Text Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
by Yu, Xiang and Wang, Han and Lu, Yizhen and De Ruiter, Marjo and Cariaso, Mike and Prins, Marcel and Van Tunen, Arjen and He, Yuke
Journal of Experimental Botany, ISSN 0022-0957, 01/2012, Volume 63, Issue 2, pp. 1025 - 1038
The species Brassica rapa includes various vegetable crops. Production of these vegetable crops is usually impaired by heat stress. Some microRNAs (miRNAs) in... 
miRNA | Brassica rapa | small RNA | heat response | TRANSCRIPTION FACTORS | SMALL RNAS | SIRNA BIOGENESIS | DIVERSE SET | GENOME | PLANT SCIENCES | EVOLUTION | GENES | TARGETS | ARABIDOPSIS | Stress, Physiological - physiology | Brassica rapa - metabolism | Genome, Plant - genetics | Molecular Sequence Data | MicroRNAs - metabolism | Hot Temperature | RNA, Plant - genetics | Brassica rapa - genetics | RNA, Plant - metabolism | Down-Regulation - physiology | Sequence Analysis, RNA | Base Sequence | Gene Expression Regulation, Plant - physiology | Brassica rapa - physiology | High-Throughput Nucleotide Sequencing | MicroRNAs - genetics | Real-Time Polymerase Chain Reaction | Evolution, Molecular | Research Papers
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