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Bioinformatics, ISSN 1367-4803, 3/2010, Volume 26, Issue 5, pp. 589 - 595
Motivation: Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. Most of them are very efficient... 
DNA-SEQUENCES | SEARCH | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | BLAST | GENOME | Sequence Alignment - methods | Algorithms | Base Sequence | Humans | Genome, Human | Genomics - methods | Sequence Analysis, DNA | Queries | Alignment | Databases | Burrows-Wheeler transform | Genomes | Sequencing | Bioinformatics | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 5/2014, Volume 30, Issue 9, pp. 1266 - 1272
Journal Article
BMC BIOINFORMATICS, ISSN 1471-2105, 06/2019, Volume 20, Issue Suppl 11, pp. 279 - 8
Journal Article
Information Processing Letters, ISSN 0020-0190, 06/2019, Volume 146, pp. 17 - 19
Crochemore et al. gave in WABI 2017 an algorithm that from a set of input strings finds all pairs of strings that have Hamming distance at most a given... 
Data structures | Phylogenetic inference | Hamming distance | Positional Burrows–Wheeler Transform | Positional Burrows-Wheeler Transform | COMPUTER SCIENCE, INFORMATION SYSTEMS | Computer science | Algorithms | Phylogeny | Analysis
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 12/2016, Volume 656, pp. 118 - 134
We introduce bijective Burrows–Wheeler type transforms for binary strings. The original method by Burrows and Wheeler is based on lexicographic order for... 
Block order | Word | Burrows–Wheeler Transform | B-word | Suffix-sorting | Binary alphabet | String | Algorithm | Linear | Bijective | Inverse transform | Lyndon word | Lexicographic order | Data clustering | Suffix array | COMPRESSION | Burrows-heeler Transform | COMPUTER SCIENCE, THEORY & METHODS | BWT | BURROWS-WHEELER TRANSFORM | Computer science | Computer Science
Journal Article
Journal of Computational Biology, ISSN 1066-5277, 09/2019, Volume 26, Issue 9, pp. 948 - 961
Indexing huge collections of strings, such as those produced by the widespread sequencing technologies, heavily relies on multistring generalizations of the... 
Other Research Articles | GRAPH | parallel algorithms | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | longest common prefix array | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Burrows-Wheeler transform | CONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | STATISTICS & PROBABILITY | multithreading | BWT
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 09/2019
Journal Article
Bioinformatics, ISSN 1367-4803, 2015, Volume 31, Issue 10, pp. 1577 - 1583
Journal Article
Information Processing Letters, ISSN 0020-0190, 07/2019, Volume 147, pp. 82 - 87
A or string on an alphabet Σ is a sequence of non-empty subsets of Σ. Given a degenerate string of length and its Burrows–Wheeler transform we present a new... 
Burrows–Wheeler transform | Algorithms | String | Pattern matching | Degenerate | Burrows-Wheeler transform | ALGORITHM | COMPUTER SCIENCE, INFORMATION SYSTEMS | Data Structures and Algorithms | Computer Science
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 04/2014, Volume 531, pp. 77 - 89
In this paper we introduce the ( -BWT), a variant of the classic Burrows–Wheeler Transform. The original BWT uses lexicographic order, whereas we apply a... 
Word | Burrows–Wheeler Transform | V-order | Lex-extension order | String | Algorithm | Linear | V-transform | Complexity | Bijective | V-word | Lyndon word | Lexicographic order | Total order | V-BWT | Suffix array | Burrows-Wheeler Transform | MAXIMAL FACTORIZATION FAMILIES | WORDS | EXTENSION | SPACE | CONSTRUCTION | COMPUTER SCIENCE, THEORY & METHODS | Computer science | Employee motivation | Usage | Algorithms | Analysis
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 02/2018, Volume 710, pp. 52 - 65
Journal Article
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 2007, Volume 387, Issue 3, pp. 298 - 312
We describe and highlight a generalization of the Burrows–Wheeler Transform ( ) to a multiset of words. The extended transformation, denoted by , is... 
Sequence comparison | Burrows–Wheeler transform | Alignment-free distance measure | Burrows-Wheeler transform | COMPUTER SCIENCE, THEORY & METHODS | COMPRESSION | sequence comparison | alignment-free distance measure | SEQUENCE
Journal Article
Journal of Discrete Algorithms, ISSN 1570-8667, 01/2017, Volume 42, pp. 14 - 22
In this article we extend the elegant in-place Burrows–Wheeler transform (BWT) algorithm proposed by Crochemore et al. . Our extension is twofold: we first... 
Burrows–Wheeler transform | Compressed LCP array | Elias coding | LCP array | In-place algorithms | Algorithms | Indexing | Computer Science - Data Structures and Algorithms
Journal Article
Fundamenta Informaticae, ISSN 0169-2968, 2017, Volume 154, Issue 1-4, pp. 277 - 288
The Burrows-Wheeler Transform is a well known transformation widely used in Data Compression: important competitive compression software, such as Bzip (cf.... 
Fixed Points | Permutations | Burrows-Wheeler Transform | COMPUTER SCIENCE, SOFTWARE ENGINEERING | MATHEMATICS, APPLIED | WORDS | Software | Clustering | Data compression | Burrows-Wheeler transform
Journal Article
Mathematics in Computer Science, ISSN 1661-8270, 06/2017, Volume 11, Issue 2, pp. 159 - 176
To access, purchase, authenticate, or subscribe to the full-text of this article, please visit this link: http://dx.doi.org/10.1007/s11786-017-0296-2 The... 
Parallel index construction | Burrows-Wheeler transform | Semi-external algorithm | Genomics | Algorithms | Indexing
Journal Article
Algorithms for Molecular Biology, ISSN 1748-7188, 07/2017, Volume 12, Issue 1, pp. 1 - 12
Journal Article
Chemometrics and Intelligent Laboratory Systems, ISSN 0169-7439, 10/2019, Volume 193, p. 103809
It is of long-standing interest to probe protein primary structures by their codes alone with minimal assumptions and model parameters. Approaches over decades... 
Protein sequences | Primary structures | Protein information | Burrows-wheeler transform | Drug targets | Viral proteins
Journal Article
Bioinformatics, ISSN 1367-4803, 11/2016, Volume 32, Issue 22, pp. 3498 - 3500
Motivation: The Full-text index in Minute space (FM-index) derived from the Burrows-Wheeler transform (BWT) is broadly used for fast string matching in large... 
READ ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SUFFIX ARRAY | ALIGNER | ALGORITHMS | INDEX | GENOME ANALYSIS | BWT | BURROWS-WHEELER TRANSFORM | Abstracting and Indexing as Topic | Software | Algorithms | Genome | Humans
Journal Article