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Microbes and infection, ISSN 1286-4579, 08/2019
Receptor interacting protein kinase 3 (Ripk3) is a signal relay protein involved in initiation of programmed cell death (necroptosis) and modulation of... 
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2018, Volume 34, Issue 9, pp. 1466 - 1472
Abstract Motivation Significant improvements in the prediction of protein residue-residue contacts are observed in the recent years. These contacts, predicted... 
RESIDUE-RESIDUE CONTACTS | CASP11 | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2018, Volume 34, Issue 6, pp. 1063 - 1065
Abstract Summary Refinement of protein structure models is a long-standing problem in structural bioinformatics. Molecular dynamics-based methods have emerged... 
CASP11 | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | STRUCTURE PREDICTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Applications Notes
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 10/2017, Volume 13, Issue 10, pp. 5146 - 5162
Improving the quality of a given protein structure can serve as the ultimate solution for accurate protein structure prediction, and seeking such a method is... 
MODELS | CASP11 | RECOGNITION | CATEGORY | GLOBAL OPTIMIZATION | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | PARAMETERS | MOLECULAR-DYNAMICS SIMULATIONS | STRUCTURE PREDICTION | Protein Conformation | Molecular Dynamics Simulation | Proteins - chemistry
Journal Article
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 02/2014, Volume 189, Issue 3, pp. 282 - 291
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 01/2018, Volume 19, Issue 1, pp. 22 - 5
Journal Article
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, ISSN 0887-3585, 09/2016, Volume 84, pp. 233 - 246
We report the structure prediction results of a new composite pipeline for template-based modeling (TBM) in the 11th CASP experiment. Starting from multiple... 
QUALITY | STRUCTURE REFINEMENT | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | QUARK | ALIGNMENTS | 3-DIMENSIONAL STRUCTURE | BIOPHYSICS | CASP11 | MODELS | SERVER | threading | protein structure prediction | I-TASSER
Journal Article
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, ISSN 0887-3585, 09/2016, Volume 84, pp. 302 - 313
A novel protein refinement protocol is presented which utilizes molecular dynamics (MD) simulations of an ensemble of adaptively restrained homologous... 
MOLECULAR-DYNAMICS | CASP | BIOCHEMISTRY & MOLECULAR BIOLOGY | molecular dynamics simulation | CONFORMATIONS | structure refinement | STATISTICAL POTENTIALS | homology modeling | GENOMICS | BIOPHYSICS | CASP11 | MODELS | DATABASE | CATEGORY | SEQUENCE | STRUCTURE PREDICTION
Journal Article
Journal Article
Journal Article
The Journal of Physical Chemistry B, ISSN 1520-6106, 04/2017, Volume 121, Issue 15, pp. 3546 - 3554
Despite their different implementations, comparison of the best threading approaches to the prediction of evolutionary distant protein structures reveals that... 
TM-SCORE | SINGLE | CASP11 | ALIGNMENT | SERVER | ALGORITHM | SECONDARY STRUCTURE PREDICTION | FRAGMENT | CHEMISTRY, PHYSICAL | CONTACT RESTRAINTS | I-TASSER | Protein Conformation | Algorithms | Proteins - chemistry | Proteins | Molecular dynamics | Usage | Research | Structure | Glass ceiling
Journal Article