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1. Full Text CcpA‐mediated repression of Clostridium difficile toxin gene expression
by Antunes, Ana and Martin‐Verstraete, Isabelle and Dupuy, Bruno
Molecular Microbiology, ISSN 0950-382X, 02/2011, Volume 79, Issue 4, pp. 882 - 899
The presence of glucose or other rapidly metabolizable carbon sources in the bacterial growth medium strongly represses Clostridium difficile toxin synthesis... 
LISTERIA-MONOCYTOGENES | CARBON CATABOLITE REPRESSION | GRAM-POSITIVE BACTERIA | DEFINED MEDIUM | BACILLUS-SUBTILIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SIGMA-FACTOR | MICROBIOLOGY | GLOBAL REGULATOR CODY | PHOSPHOTRANSFERASE SYSTEM | CONTROL PROTEIN CCPA | KINASE-CATALYZED PHOSPHORYLATION | Promoter Regions, Genetic | Phosphorylation | Signal Transduction | Bacterial Proteins - genetics | Clostridium difficile - genetics | Cercopithecus aethiops | Gene Knockout Techniques | Genetic Complementation Test | Bacterial Toxins - biosynthesis | Catabolite Repression | Animals | Glucose - metabolism | RNA, Bacterial - genetics | Bacterial Proteins - metabolism | Clostridium difficile - metabolism | Gene Expression Regulation, Bacterial | Vero Cells | Enzymes | Glucose | Gene expression | Dextrose | Fructose | Carbohydrates | Genes | Gram-positive bacteria | Molecular biology | Bacteriology | Index Medicus
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2. Full Text Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants
by Hollinshead, Whitney D and Rodriguez, Sarah and Martin, Hector Garcia and Wang, George and Baidoo, Edward E. K and Sale, Kenneth L and Keasling, Jay D and Mukhopadhyay, Aindrila and Tang, Yinjie J and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Biotechnology for Biofuels, ISSN 1754-6834, 10/2016, Volume 9, Issue 1, pp. 212 - 212
Background: Glycolysis breakdowns glucose into essential building blocks and ATP/NAD(P)H for the cell, occupying a central role in its growth and... 
Xylose | 13C | Catabolite repression | Channeling | Metabolic modeling | EMP | Synthetic biology | PENTOSE-PHOSPHATE PATHWAY | ENTNER-DOUDOROFF PATHWAY | ENERGY & FUELS | FATTY-ACIDS | INTRACELLULAR METABOLITES | RESPONSES | C-13 | C-13-METABOLIC FLUX ANALYSIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GLUCOSE | SCALE | CENTRAL CARBON METABOLISM | COPRODUCTION | 09 BIOMASS FUELS
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3. Full Text Multiple Hfq‐Crc target sites are required to impose catabolite repression on (methyl)phenol metabolism in Pseudomonas putida CF600
by Wirebrand, Lisa and Madhushani, Anjana W. K and Irie, Yasuhiko and Shingler, Victoria and Medicinska fakulteten and Institutionen för molekylärbiologi (Medicinska fakulteten) and Umeå universitet and Teknisk-naturvetenskapliga fakulteten and Institutionen för molekylärbiologi (Teknisk-naturvetenskaplig fakultet)
Environmental Microbiology, ISSN 1462-2912, 01/2018, Volume 20, Issue 1, pp. 186 - 199
The dmp ‐system encoded on the IncP‐2 pVI150 plasmid of Pseudomonas putida CF600 confers the ability to assimilate (methyl)phenols. Regulation of the dmp... 
TRANSCRIPTIONAL REGULATOR | SIGMA-DEPENDENT REGULATOR DMPR | RNA-BINDING | DEGRADATION PATHWAY | MICROBIOLOGY | INHIBITS TRANSLATION | GLOBAL REGULATOR | AROMATIC-COMPOUNDS | EFFECTOR CONTROL | SP STRAIN CF600 | BIOFILM DEVELOPMENT | Pseudomonas putida - genetics | Pseudomonas putida - metabolism | Gene Expression Regulation, Bacterial - genetics | Bacterial Proteins - genetics | Plasmids - genetics | Repressor Proteins - genetics | Bacterial Proteins - metabolism | Catabolite Repression - genetics | Catabolite Repression - physiology | Host Factor 1 Protein - genetics | Host Factor 1 Protein - metabolism | Repressor Proteins - metabolism | Proteins | Phenols | Physiological aspects | Biodegradation | Translation | Catabolite repression | RNA | Genes | Gene regulation | Translation initiation | Nucleic acids | Metabolism | Gene expression | Ribonucleic acid--RNA | Substrates | Control | Coding | Plasmids | Bacteria | Pseudomonas putida | Carbon sources | Index Medicus | Basic Medicine | Phenol catabolism | catabolite repression | Medical and Health Sciences | Medicin och hälsovetenskap | CrcY | CrcZ | Cell and Molecular Biology | Hfq | Crc | Medicinska och farmaceutiska grundvetenskaper | translational regulation | IncP-2 plasmids | Cell- och molekylärbiologi
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4. Full Text Elimination of carbon catabolite repression in Clostridium acetobutylicum—a journey toward simultaneous use of xylose and glucose
by Bruder, Mark and Moo-Young, Murray and Chung, Duane A and Chou, C Perry
Applied Microbiology and Biotechnology, ISSN 0175-7598, 9/2015, Volume 99, Issue 18, pp. 7579 - 7588
The industrial Gram-positive anaerobe Clostridium acetobutylicum is a valued acetone, butanol, and ethanol (ABE) solvent producer that is able to utilize a... 
Life Sciences | Xylose | Biotechnology | Clostridium acetobutylicum | Microbiology | Lignocellulose | Microbial Genetics and Genomics | Butanol | Catabolic responsive element | Biofuel | Carbon catabolite repression | TRANSCRIPTION REGULATOR CCPA | SOLVENT PRODUCTION | CRYSTAL-STRUCTURE | ESCHERICHIA-COLI | RESPONSIVE ELEMENT | CONTROL PROTEIN CCPA | GRAM-POSITIVE BACTERIA | BACILLUS-SUBTILIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENE-EXPRESSION | BUTANOL PRODUCTION | Catabolite Repression | Clostridium acetobutylicum - genetics | Metabolic Networks and Pathways - genetics | Xylose - metabolism | Response Elements | Clostridium acetobutylicum - metabolism | Glucose - metabolism | Mutation | Gene Expression Regulation, Bacterial | Clostridium | Carbohydrates | Usage | Biomass energy | Physiological aspects | Research | Production processes | Studies | Biodiesel fuels | Analysis | Bacteria | Biosynthesis | Index Medicus
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5. Full Text Improved α-amylase production by Aspergillus oryzae after a double deletion of genes involved in carbon catabolite repression
by Ichinose, Sakurako and Tanaka, Mizuki and Shintani, Takahiro and Gomi, Katsuya
Applied Microbiology and Biotechnology, ISSN 0175-7598, 1/2014, Volume 98, Issue 1, pp. 335 - 343
In filamentous fungi, the expression of secretory glycoside hydrolase encoding genes, such as those for amylases, cellulases, and xylanases, is generally... 
Life Sciences | Biotechnology | CreA transcription repressor | Microbiology | Aspergillus oryzae | Carbon catabolite derepression | CreB ubiquitin processing protease | Microbial Genetics and Genomics | α-Amylase production | Double deletion mutant | SOLID-STATE CULTURE | TRICHODERMA-REESEI | ENCODING GENE | alpha-Amylase production | CREA GENE | CLONING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | TRANSCRIPTIONAL ACTIVATOR | IN-VIVO | NIDULANS | EXPRESSION | NUCLEOTIDE-SEQUENCE | Gene Expression Regulation, Fungal | Catabolite Repression | Metabolic Engineering - methods | Aspergillus oryzae - genetics | Aspergillus oryzae - enzymology | Gene Deletion | Culture Media - chemistry | alpha-Amylases - biosynthesis | alpha-Amylases - genetics | Index Medicus | Fungi | Genes | Deletion | Gene expression | Carbon | Culture | Strain
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6. Full Text Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa Carbon Catabolite Repression
by Sonnleitner, Elisabeth and Bläsi, Udo
PLoS Genetics, ISSN 1553-7390, 2014, Volume 10, Issue 6, pp. e1004440 - e1004440
Carbon Catabolite repression (CCR) allows a fast adaptation of Bacteria to changing nutrient supplies. The Pseudomonas aeruginosa (PAO1) catabolite repression... 
CHAPERONE HFQ | MESSENGER-RNA | ESCHERICHIA-COLI-HFQ | GENETICS & HEREDITY | TRANSLATION INITIATION | INHIBITS TRANSLATION | GLOBAL REGULATOR | SOLUBLE-RNA | BINDING PROTEIN | VIRULENCE | SIGNAL-TRANSDUCTION PATHWAY | Amidohydrolases - metabolism | Carbon - metabolism | RNA-Binding Proteins - genetics | RNA Processing, Post-Transcriptional | Amidohydrolases - genetics | RNA, Messenger - genetics | Ribosomes - metabolism | Amidohydrolases - antagonists & inhibitors | Pseudomonas aeruginosa - genetics | Pseudomonas aeruginosa - metabolism | RNA, Bacterial - genetics | Pseudomonas Infections | Catabolite Repression - genetics | Gene Expression Regulation, Bacterial | Host Factor 1 Protein - genetics | Regulatory Sequences, Ribonucleic Acid - genetics | Physiological aspects | Pseudomonas aeruginosa | Genetic aspects | Research | RNA | Genetic regulation | Index Medicus | Proteins | Signal transduction | Scholarships & fellowships | Bacteria | Standard deviation | Regulation | Carbon | Experiments | Bacteriology | Binding sites
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7. Full Text Elimination of carbon catabolite repression in Klebsiella oxytoca for efficient 2,3-butanediol production from glucose–xylose mixtures
by Ji, Xiao-Jun and Nie, Zhi-Kui and Huang, He and Ren, Lu-Jing and Peng, Chao and Ouyang, Ping-Kai
Applied Microbiology and Biotechnology, ISSN 0175-7598, 2/2011, Volume 89, Issue 4, pp. 1119 - 1125
Microbial preference for glucose implies incomplete and/or slow utilization of lignocellulose hydrolysates, which is caused by the regulatory mechanism named... 
Xylose | Biotechnology | Chemistry | Klebsiella oxytoca | Microbiology | Microbial Genetics and Genomics | 2,3-Butanediol | Mutant cAMP receptor protein | Carbon catabolite repression | Glucose | ACID | ESCHERICHIA-COLI | ETHANOL-PRODUCTION | CAMP RECEPTOR PROTEIN | SUGAR MIXTURES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FERMENTATION | PHOSPHOTRANSFERASE SYSTEM | ENTERIC BACTERIA | PNEUMONIAE | PHOSPHOENOLPYRUVATE | Gene Expression | Xylose - metabolism | Klebsiella oxytoca - genetics | Mutant Proteins - genetics | Molecular Sequence Data | Cyclic AMP Receptor Protein - genetics | DNA, Bacterial - chemistry | Cyclic AMP Receptor Protein - biosynthesis | Klebsiella oxytoca - metabolism | Sequence Analysis, DNA | Butylene Glycols - metabolism | Mutant Proteins - biosynthesis | Catabolite Repression | DNA, Bacterial - genetics | Glucose - metabolism | Gene Expression Regulation, Bacterial | Adenylic acid | Dextrose | Studies | Alternative energy sources | Biomass energy | Index Medicus | Biomass
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8. Full Text Carbon Catabolite Repression in Yeast is Not Limited to Glucose
by Simpson-Lavy, K and Kupiec, M
SCIENTIFIC REPORTS, ISSN 2045-2322, 04/2019, Volume 9, Issue 1, pp. 6491 - 10
Cells adapt their gene expression and their metabolism in response to a changing environment. Glucose represses expression of genes involved in the catabolism... 
COENZYME-A SYNTHETASE | NUCLEAR-LOCALIZATION | ACID | SACCHAROMYCES-CEREVISIAE RESPONSE | GENE | METABOLISM | MULTIDISCIPLINARY SCIENCES | ACETYL-COENZYME | ALCOHOL DEHYDROGENASES | ETHANOL | TRANSCRIPTION FACTOR | Catabolite repression | Ethanol | Alcohol dehydrogenase | Glucose | Gene expression | Acetic acid | Galactose | Carbon | Carbon sources
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9. Full Text Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa
by Sonnleitner, E and Abdou, L and Haas, D
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, ISSN 0027-8424, 12/2009, Volume 106, Issue 51, pp. 21866 - 21871
In the metabolically versatile bacterium Pseudomonas aeruginosa, the RNA-binding protein Crc is involved in catabolite repression of a range of degradative... 
sigma | SYSTEM | PROTEIN | CrcZ | MULTIDISCIPLINARY SCIENCES | CbrA/CbrB two-component system | POSITIVE CONTROL | PUTIDA | TRANSCRIPTIONAL REGULATOR | Crc | PATHWAY | AMIDASE SYNTHESIS | CBRAB | FLUORESCENS | amidase | Carbon - metabolism | Genes, Bacterial | Pseudomonas aeruginosa - genetics | RNA Processing, Post-Transcriptional | Signal Transduction | Pseudomonas aeruginosa - metabolism | Base Sequence | Molecular Sequence Data | RNA, Bacterial - metabolism | Enzymes | Microbiological research | Physiological aspects | Pseudomonas aeruginosa | Hydrolases | Binding proteins | Properties | Methods | Bacteria | Glucose | Ribonucleic acid--RNA | Gene expression | Bacterial proteins | Binding sites | Index Medicus | Benzoic acid | RNA-binding protein | Catabolite repression | Transcription | Amidase | Mannitol | Translation initiation | Sigma factor | Mutation | Carbon sources | Biological Sciences | CbrA | CbrB two-component system | σ54
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10. Full Text Catabolite repression in Campylobacter jejuni correlates with intracellular succinate levels
by van der Stel, Anne‐Xander and van de Lest, Chris H. A and Huynh, Steven and Parker, Craig T and van Putten, Jos P. M and Wösten, Marc M. S. M
Environmental Microbiology, ISSN 1462-2912, 04/2018, Volume 20, Issue 4, pp. 1374 - 1388
Bacteria have evolved different mechanisms to catabolize carbon sources from nutrient mixtures. They first consume their preferred carbon source, before others... 
2-COMPONENT REGULATORY SYSTEM | CYCLIC-AMP | CARBON SOURCE | PSEUDOMONAS-AERUGINOSA | ESCHERICHIA-COLI | GROWTH-RATE | GENE-EXPRESSION | MICROBIOLOGY | GLOBAL REGULATOR | HOST COLONIZATION | MASS-SPECTROMETRY | Physiological aspects | Lactates | Enzymes | Amino acids | Metabolites | Analysis | Pathogens | Repressing | Nutrients (mineral) | Regulators | Catabolite repression | Nutrient sources | Lactate | Serine | Pyruvic acid | Metabolism | Carbon | Organic acids | Proteins | Gene silencing | Utilization | Regulatory mechanisms (biology) | Bacteria | Lactic acid | Intracellular | Carbon sources | Regulatory proteins | Campylobacter | Index Medicus
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11. Full Text An evolutionarily conserved RNase‐based mechanism for repression of transcriptional positive autoregulation
by Wurtmann, Elisabeth J and Ratushny, Alexander V and Pan, Min and Beer, Karlyn D and Aitchison, John D and Baliga, Nitin S
Molecular Microbiology, ISSN 0950-382X, 04/2014, Volume 92, Issue 2, pp. 369 - 382
It is known that environmental context influences the degree of regulation at the transcriptional and post‐transcriptional levels. However, the principles... 
Anaerobiosis | Potassium - metabolism | Osmotic Pressure | Aerobiosis | Gene Expression Regulation | Stress, Physiological | Homeostasis | Ribonucleases - metabolism | Phenotype | Energy Metabolism | RNA Interference | Escherichia coli - genetics | Halobacterium salinarum - genetics | Escherichia coli - metabolism | Halobacterium salinarum - metabolism | Transcription, Genetic | FEEDBACK LOOPS | ZOOLOGY | MESSENGER-RNA | CATABOLITE REPRESSION | ESCHERICHIA-COLI | IN-VIVO | GENOME-WIDE ANALYSIS | SUBCELLULAR-LOCALIZATION | GLOBAL ANALYSIS | SMALL REGULATORY RNAS | SACCHAROMYCES-CEREVISIAE | Genetic aspects | Genetic transcription | Ribonuclease | Energy conservation | Genotype & phenotype | E coli | Potassium | Genes | Adenosine triphosphatase | Salinity | Index Medicus | environmental response | gene regulation | post-transcriptional regulation
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12. Full Text SuhB, a small non‐coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA
by García‐Romero, Inmaculada and Förstner, Konrad U and Santero, Eduardo and Floriano, Belén
Environmental Microbiology, ISSN 1462-2912, 10/2018, Volume 20, Issue 10, pp. 3671 - 3683
Global dRNA‐seq analysis of transcription start sites combined with in silico annotation using Infernal software revealed the expression of 91 putative... 
BIODEGRADATION | HFQ | BACTERIA | ESCHERICHIA-COLI | SYSTEMS | MICROBIOLOGY | HELICOBACTER-PYLORI | EXPRESSION | SEQ | RNA | Genetic translation | Analysis | Genes | Tetralin | Phenotypes | Immunoprecipitation | Catabolite repression | Transcription | Fluorescence | Nucleic acids | Gene deletion | Gene expression | Carbon | Cells | Strain | Deletion mutant | Degradation | Gene silencing | Annotations | Clonal deletion | Ribonucleic acids | Deletion | Carbon sources
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13. Full Text Depletion of glucose activates catabolite repression during pneumonic plague
by Ritzert, Jeremy T and Lathem, Wyndham W
Journal of Bacteriology, ISSN 0021-9193, 06/2018, Volume 200, Issue 11
Bacterial pathogenesis depends on changes in metabolic and virulence gene expression in response to changes within a pathogen's environment. The plague-causing... 
Crp | Plague | Catabolite repression | Pla | Glucose | PtsG | Yersinia pestis | CRP GENE | LUNG | catabolite repression | glucose | ESCHERICHIA-COLI | ENVIRONMENT | MICROBIOLOGY | PROLIFERATION | plague | VIRULENCE | AUTOREGULATION | YERSINIA-PESTIS | AMP RECEPTOR PROTEIN | INFECTION | Pathogens | Transcription | Pathogenesis | Lung | Virulence | Proteinase | Activation | Glucose phosphotransferase | Metabolism | Gene expression | Proteins | Biofilms | Clonal deletion | Lungs | Protease | Rodents | Deletion | Bacteria | Environment | Phosphotransferase
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