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cd-hit (7) 7
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1. Full Text Domain position prediction based on sequence information by using fuzzy mean operator
by Jing, Runyu and Sun, Jing and Wang, Yuelong and Li, Menglong
Proteins, structure, function, and bioinformatics, ISSN 0887-3585, 08/2015, Volume 83, Issue 8, pp. 1462 - 1469
template‐based method | Uniprot | region division | PSI‐BLAST | Cd‐hit | Region division | PSI-BLAST | Template-based method | Cd-hit | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Protein Structure, Tertiary | Amino Acid Sequence | Sequence Alignment - methods | Sequence Analysis, Protein - methods | Databases, Protein | Proteins - chemistry | Machine Learning | Index Medicus
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2. Full Text Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica
by Eierman, Laura E and Hare, Matthew P
BMC genomics, ISSN 1471-2164, 06/2014, Volume 15, Issue 1, pp. 503 - 503
dN/dS | SNP | Crassostrea virginica | Transcriptome | Gene enrichment | Osmoregulation | Cd-hit | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Animals | Crassostrea - metabolism | Molecular Sequence Annotation | Open Reading Frames | Crassostrea - genetics | Gene Expression Profiling | Polymorphism, Single Nucleotide | Gene Ontology | Osmoregulation - genetics | Cluster Analysis | Amino acids | Single nucleotide polymorphisms | Genetic translation | Salinity | Studies | Water quality | Oysters | Genomes | Gene expression | River ecology | Index Medicus
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3. Full Text Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes
by Couvreur, Thomas L. P and Helmstetter, A.J and Koenen, E.J.M and Bethune, K and Dias Brandão, Rita and Little, S.A and Sauquet, H and Erkens, Roy
Frontiers in plant science, ISSN 1664-462X, 01/2019, Volume 9, pp. 1941 - 1941
Herbarium | rain forests | DIVERSIFICATION | RNA | 2 International | Baiting | GENUS | Tropical rain forest | transcriptomes | systematics | MYbaits | CD-HIT | 7 Refereed | Piptostigmateae | CLADES | TREE | GENERATION | Annonaceae | CHLOROPLAST DNA REGIONS | HISTORICAL BIOGEOGRAPHY | EVOLUTIONARY HISTORY | Botanical research | Genetic aspects | Identification and classification | Genomics | Analysis | Magnoliidae | herbarium
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4. Full Text Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum
by Zhang, Jisen and Sharma, Anupma and Yu, Qingyi and Wang, Jianping and Li, Leiting and Zhu, Lin and Zhang, Xingtan and Chen, Youqiang and Ming, Ray and Univ. of Illinois at Urbana-Champaign, IL (United States)
BMC genomics, ISSN 1471-2164, 06/2016, Volume 17, Issue 1, pp. 446 - 446
Haplotypes | Homologous genes | Saccharum | Polyploidy | Genome evolution | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Computational Biology - methods | Molecular Sequence Annotation | Genome, Plant | Saccharum - genetics | Sequence Homology, Nucleic Acid | DNA Transposable Elements | Plant Proteins - genetics | Base Composition | Mutagenesis, Insertional | Polymorphism, Single Nucleotide | Genomics - methods | Databases, Nucleic Acid | Gene Order | Evolution, Molecular | Genetic aspects | Research | Sugarcane | Analysis | Index Medicus | annotation | cd-hit | tragopogon-miscellus | rust resistance gene | BASIC BIOLOGICAL SCIENCES | whole-genome | genome evolution | 09 BIOMASS FUELS | genome complexity | evolution | maize | sequence | haplotypes | homologous genes | polyploidy | sugarcane cultivar
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5. Full Text Tools for building de novo transcriptome assembly
by Geniza, Matthew and Jaiswal, Pankaj
Current plant biology, ISSN 2214-6628, 09/2017, Volume 11-12, Issue C, pp. 41 - 45
Genetic marker identification | Trinity | De novo assembly | SPAdes | De novo transcriptome assembly | Gene expression | Plant gene expression | Velvet Oases | CD-HIT-ES | Plant Ontology | TransRate | RNA-Seq | Differential gene expression | RNA QUAST | Genome annotation | Plant Reactome | Transcriptiome | BinPacker | Gene Ontology
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6. Full Text TBC: A clustering algorithm based on prokaryotic taxonomy
by Lee, Jae-Hak and Yi, Hana and Jeon, Yoon-Seong and Won, Sungho and Chun, Jongsik
The journal of microbiology, ISSN 1225-8873, 4/2012, Volume 50, Issue 2, pp. 181 - 185
Life Sciences | OTU | clustering algorithm | metagenome | Microbiology | TBC | MOTHUR | ESPRIT-Tree | UCLUST | pyrosequencing | BLASTClust | CD-HIT | Life Sciences & Biomedicine | Science & Technology | Sequence Alignment | Algorithms | Bacteria - chemistry | Prokaryotic Cells - chemistry | Bacteria - classification | Phylogeny | Bacteria - genetics | Sequence Analysis, DNA - methods | Prokaryotic Cells - classification | RNA | Genes | Analysis | DNA | Universities and colleges | Nucleotide sequencing | Biological diversity | DNA sequencing | Index Medicus | 생물학
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7. Full Text Identification of putative therapeutic targets in Candida tropicalis: An in silico approach
by Ravinarayanan, Haribalaganesh and Coico, Richard and Sundar, Krishnan
Trends in bioinformatics, ISSN 1994-7941, 08/2015, Volume 8, Issue 2, pp. 52 - 62
Candidiasis | Essential genes | DEG | Drug target | KEGG | Cluster database | CD-HIT | Proteins | Drugs | Cadmium | Databases | Algorithms | Target recognition | Candida | Computer programs
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8. Full Text Workflow for Rapid Metagenome Analysis
by Schulze, Gunnar
2014, Communications in Computer and Information Science, ISBN 9783662450055, Volume 500
annotation | cd-Hit-algorithm | clustering | metagenome | protein family | bioinformatics | Cd-Hit-algorithm | Protein family | Clustering | Bioinformatics | Metagenome | Annotation
Book Chapter
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9. Full Text CD-HIT Workflow Execution on Grids Using Replication Heuristics
by Vazquez-Poletti, J.L and Huedo, E and Montero, R.S and Llorente, I.M
2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), 05/2008, pp. 735 - 740
System testing | Workflows | Replication Heuristics | CD-HIT | Proteins | Databases | Processor scheduling | Memory management | Grid computing | Performance analysis | Bioinformatics | Workflow management software | Contracts
Conference Proceeding
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10. Klasifikace malých nekódujících RNA
by Žigárdi, Tomáš
support vector machine; duplex; next-generation sekvenování; next-generation sequencing; klasifikace rostlinných miRNA; central dogma of molecular biology; cross-validation; CD-HIT; malé nekódující RNA; miRNA; centrální dogma molekulární biologie; small noncoding RNAs; sequences clustering; zhlukování sekvencí; classification of plant miRNA
Dissertation
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