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1. Conformational changes in HL60 cells during differentiation and apoptosis induced by genistein
by Wang, Zhao and Zhou, Jiangbing and Sun, Suqin and Liu, Mingjie and Zhang, Hongjun
Conformational changes in HL60 cells during differentiation and apoptosis induced by genistein, 12/2001
Genistein can induce not only differentiation but also apoptosis in HL60 human leukemia cells. During the differentiation and apoptosis, the HL60 cells undergo... 
differentiation | genistein | apoptosis | conformational change | HL60
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2. Full Text NMR investigations on H2A-H2B heterodimer dynamics conferred by histone variant H2A.Z
by Dai, Linchang and Xu, Ning and Zhou, Zheng
Biochemical and Biophysical Research Communications, ISSN 0006-291X, 10/2019, Volume 518, Issue 4, pp. 752 - 758
H2A.Z, a highly conserved histone H2A variant in eukaryotes, plays critical roles in multiple nuclear events. H2A.Z forms a heterodimer with H2B when... 
NMR | Dynamics | H2A.Z | Conformational change
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3. Full Text In-cell SHAPE reveals that free 30S ribosome subunits
by McGinnis, Jennifer L and Liu, Qi and Lavender, Christopher A and Devaraj, Aishwarya and McClory, Sean P and Fredrick, Kurt and Weeks, Kevin M
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 03/2015, Volume 112, Issue 8, pp. 2425 - 2430
16S rRNA | In vivo | SHAPE | Ribosome | Conformational change
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4. Full Text Efficient pre-catalytic conformational change of reverse transcriptases from SAMHD1 non-counteracting primate lentiviruses during dNTP incorporation
by Coggins, Si'Ana A and Holler, Jessica M and Kimata, Jason T and Kim, Dong-Hyun and Schinazi, Raymond F and Kim, Baek
Virology, ISSN 0042-6822, 08/2019, Volume 537, pp. 36 - 44
Unlike HIV-1, HIV-2 and some SIV strains replicate at high dNTP concentrations even in macrophages due to their accessory proteins, Vpx or Vpr, that target... 
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5. Full Text Molecular dynamics simulation revealed the intrinsic conformational change of cellular inhibitor of apoptosis protein-1
by Xu, Heng and Tang, Zhengkuan and Zuo, Yu and Xiong, Fengmin and Chen, Kaixian and Jiang, Hualiang and Luo, Cheng and Zhang, Hao
Journal of Biomolecular Structure and Dynamics, ISSN 0739-1102, 2019, pp. 1 - 10
Inhibitor of apoptosis proteins (IAPs) are important regulators of apoptosis, and protein targets for the development of anti-cancer drugs. Cellular inhibitor... 
MD simulation | dimerization | cIAP1 | conformational change
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6. Full Text Enzymatic Control of the Conformational Landscape of Supramolecular Assembling Peptides
by Shi, Junfeng and Fichman, Galit and Schneider, Joel.P
Angewandte Chemie (International ed. in English), ISSN 1433-7851, 8/2018, Volume 57, Issue 35, pp. 11188 - 11192
Post-translational modification is a common mechanism to affect conformational change in proteins, which in turn, regulates function. Herein, this principle is... 
supramolecular hydrogel | conformational change | Enzyme | self-assemble | dephosphorylation
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7. Solvent-dependent conformational change in cephalosporin by HPLC method
by Zhang, Hailing and Liu, Shuyu
Asian Journal of Chemistry, ISSN 0970-7077, 2015, Volume 27, Issue 1, pp. 365 - 367
Conformational change | Cephalosporin | HPLC
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8. Full Text Pedal motion in crystals
by Harada, Jun and Ogawa, Keiichiro
Chemical Society Reviews, ISSN 0306-0012, 2009, Volume 38, Issue 8, pp. 2244 - 2252
This tutorial review introduces pedal motion in crystals, where a pair of benzene rings in a molecule move like the pedals of a bicycle. The pedal motion... 
STILBENE | CONFORMATIONAL-CHANGE | PHOTOISOMERIZATION | AZOBENZENES | DYNAMICS | X-RAY-DIFFRACTION | CHEMISTRY, MULTIDISCIPLINARY | SOLID-STATE
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9. Full Text Structure of the paramyxovirus parainfluenza virus 5 nucleoprotein in complex with an amino-terminal peptide of the phosphoprotein
by Aggarwal, Megha and Leser, George P and Kors, Christopher A and Lamb, Robert A and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Journal of Virology, ISSN 0022-538X, 03/2018, Volume 92, Issue 5
Parainfluenza virus 5 (PIV5) belongs to the family Paramyxoviridae, which consists of enveloped viruses with a nonsegmented negative-strand RNA genome... 
Nucleoprotein | Replication | Phosphoprotein | Conformational change | PIV5 | Paramyxovirus | Crystal structure | replication | phosphoprotein | VIROLOGY | nucleoprotein | crystal structure | conformational change | paramyxovirus
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10. Full Text Ligand-induced conformational dynamics of the Escherichia coli Na+/H+ antiporter NhaA revealed by hydrogen/deuterium exchange mass spectrometry
by Eisinger, Martin Lorenz and Dörrbaum, Aline Ricarda and Michel, Hartmut and Padan, Etana and Langer, Julian David
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2017, Volume 114, Issue 44, pp. 11691 - 11696
Na /H antiporters comprise a family of membrane proteins evolutionarily conserved in all kingdoms of life and play an essential role in cellular ion... 
Membrane protein | Antiporter | HDX-MS | Conformational change | NhaA | Biological Sciences | membrane protein | antiporter | conformational change
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11. Full Text Markov state models of biomolecular conformational dynamics
by Chodera, John D and Noé, Frank
Current Opinion in Structural Biology, ISSN 0959-440X, 04/2014, Volume 25, pp. 135 - 144
It has recently become practical to construct (MSMs) that reproduce the long-time statistical conformational dynamics of biomolecules using data from molecular... 
FINGERPRINTS | ENSEMBLE | FOLDING KINETICS | AMBER | LANDSCAPE | BIOCHEMISTRY & MOLECULAR BIOLOGY | COMPLEXITY | RELAXATION | SIMULATIONS | PROTEIN REVEAL | CELL BIOLOGY | Models, Molecular | Markov Chains | Proteins - metabolism | Proteins - chemistry | Biochemistry - methods | Molecular Conformation | molecular kinetics | Markov state models | protein folding | molecular dynamics | conformational change | ligand binding
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12. Full Text Structures of Asymmetric ClpX Hexamers Reveal Nucleotide-Dependent Motions in a AAA plus Protein-Unfolding Machine
by Glynn, SE and Martin, A and Nager, AR and Baker, TA and Sauer, RT
CELL, ISSN 0092-8674, 11/2009, Volume 139, Issue 4, pp. 744 - 756
ClpX is a AAA+ machine that uses the energy of ATP binding and hydrolysis to unfold native proteins and translocate unfolded polypeptides into the ClpP... 
TRANSLOCATION | CONFORMATIONAL-CHANGE | SUBSTRATE-BINDING | MECHANISM | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | DEGRADATION MACHINE | CHAPERONE | ATP | PORE LOOPS | ZINC-BINDING DOMAIN | CELL BIOLOGY
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13. Full Text Structural basis of the pH-dependent conformational change of the N-terminal region of human mannose receptor/CD206
by Hu, Zhenzheng and Wang, Yuanyuan and Cheng, Chen and He, Yongning
Journal of structural biology, ISSN 1047-8477, 09/2019
Mannose receptor (MR, CD206) is an immune receptor highly expressed on macrophages and plays important roles in glycoprotein clearance, immune response and... 
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14. Full Text Total Synthesis of Emmyguyacins A and B, Potential Fusion Inhibitors of Influenza Virus
by Jana, Santanu and Sarpe, Vikram A and Kulkarni, Suvarn S
Organic Letters, ISSN 1523-7060, 11/2018, Volume 20, Issue 21, pp. 6938 - 6942
Fungal glycolipids emmyguyacins A and B inhibit the pH-dependent conformational change of hemaglutinin A during replication of the Influenza virus. Herein, we... 
ROUTE | TREHALOSE | HEMAGGLUTININ | BUILDING-BLOCKS | CHEMISTRY, ORGANIC | STEREOSELECTIVE-SYNTHESIS | BACTERIAL | PH CONFORMATIONAL-CHANGE | SUGAR
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15. Full Text Analysis of the role of Mg 2+ on conformational change and target recognition by Ciliate Euplotes octocarinatus centrin
by Zhao, Yaqin and Yan, Jun and Feng, Yanan and Liang, Aihua and Yang, Binsheng
Journal of Photochemistry & Photobiology, B: Biology, ISSN 1011-1344, 2011, Volume 105, Issue 1, pp. 60 - 68
â–º Mg may bind with EoCen and located, at least partially, within the calcium-binding sites. â–º Mg plays an opposite role to the Ca -induced conformations... 
Centrin | Melittin | Magnesium | Conformational change
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16. Full Text Coarse-Graining Methods for Computational Biology
by Saunders, Marissa G and Voth, Gregory A
Annual Review of Biophysics, ISSN 1936-122X, 5/2013, Volume 42, Issue 1, pp. 73 - 93
Connecting the molecular world to biology requires understanding how molecular-scale dynamics propagate upward in scale to define the function of biological... 
protein association | multiscale | molecular dynamics | biophysics | coarse-graining | simulation | BIOMOLECULAR COMPLEXES | MOLECULAR-DYNAMICS | SINGLE-PARAMETER | MODEL | INTERACTION POTENTIALS | CONFORMATIONAL-CHANGE | POLYMER | COMPUTER-SIMULATION | FORCE-FIELD | PROTEINS | Thermodynamics | Computational Biology - methods | Algorithms | Proteins - chemistry | Models, Biological | Molecular Dynamics Simulation | Research | Biophysics | Molecular biology | Computational biology
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17. Full Text Machine learning approaches to evaluate correlation patterns in allosteric signaling: A case study of the PDZ2 domain
by Botlani, Mohsen and Siddiqui, Ahnaf and Varma, Sameer
The Journal of Chemical Physics, ISSN 0021-9606, 06/2018, Volume 148, Issue 24, p. 241726
Many proteins are regulated by dynamic allostery wherein regulator-induced changes in structure are comparable with thermal fluctuations. Consequently,... 
NETWORK | ACTIVATION | DESIGN | CONFORMATIONAL-CHANGE | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | DYNAMICS | CHEMISTRY, PHYSICAL | PROTEINS | RANGE
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18. Full Text Allosteric transitions in hemoglobin revisited
by Shibayama, Naoya
Biochimica et biophysica acta. General subjects, ISSN 0304-4165, 04/2019
Human hemoglobin is an allosteric protein that exerts exquisite control over ligand binding through large-scale conformational changes. The two-state model... 
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19. Full Text AFM-based single-molecule observation of the conformational changes of DNA structures
by Endo, Masayuki
Methods (San Diego, Calif.), ISSN 1046-2023, 04/2019
Direct visualization of the biomolecules of interest is a straightforward way to elucidate the physical properties of individual molecules and their reaction... 
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20. Full Text Assembly of fibronectin extracellular matrix
by Singh, Purva and Carraher, Cara and Schwarzbauer, Jean E
Annual Review of Cell and Developmental Biology, ISSN 1081-0706, 11/2010, Volume 26, Issue 1, pp. 397 - 419
In the process of matrix assembly, multivalent extracellular matrix (ECM) proteins are induced to self-associate and to interact with other ECM proteins to... 
fibrillar | integrins | type I collagen | insolubility | conformational change | microfibrils | RESONANCE ENERGY-TRANSFER | DEVELOPMENTAL BIOLOGY | CELL-CYCLE PROGRESSION | CELL BIOLOGY | SELF-ASSOCIATION | SYNERGY SITE | GREEN FLUORESCENT PROTEIN | HEPARIN-BINDING DOMAIN | LYSOPHOSPHATIDIC ACID | INTEGRIN ALPHA-5-BETA-1 | COLLAGEN FIBRILLOGENESIS | PLASMA FIBRONECTIN | Animals | Fibronectins - chemistry | Signal Transduction | Humans | Extracellular Matrix - metabolism | Extracellular Matrix - chemistry | Fibronectins - metabolism | Fibronectins | Extracellular matrix | Cell research | Properties
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