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Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D1228 - D1233
InnateDB (http://www.innatedb.com) is an integrated analysis platform that has been specifically designed to facilitate systems-level analyses of mammalian... 
NETWORK VISUALIZATION | SPECIFICITY | INFLAMMATION | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENE-EXPRESSION | CYTOSCAPE | CANCER | User-Computer Interface | Humans | Molecular Sequence Annotation | Immunity, Innate - genetics | Databases, Genetic | Systems Biology | Computer Graphics | Animals | Cattle | Proteomics | Mice | Software | Internet
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2011, Volume 39, Issue 1, pp. D685 - D690
Pathway Commons (http://www.pathwaycommons.org) is a collection of publicly available pathway data from multiple organisms. Pathway Commons provides a... 
MODELS | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | CYTOSCAPE | INTERACTION NETWORKS | UPDATE | GENOME | User-Computer Interface | Disease - classification | Models, Biological | Databases, Protein | Genomics | Systems Integration | Databases, Genetic | Internet | Databases, Factual
Journal Article
Trends in Biochemical Sciences, ISSN 0968-0004, 2011, Volume 36, Issue 4, pp. 179 - 182
The study of individual amino acid residues and their molecular interactions in protein structures is crucial for understanding structure–function... 
CYTOSCAPE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | Models, Molecular | Structural Homology, Protein | Proteins - chemistry | Software Design | Humans
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2014, Volume 42, Issue 1, pp. W167 - W174
Biological network analysis is a powerful approach to gain systems-level understanding of patterns of gene expression in different cell types, disease states... 
VISUALIZATION | PLATFORM | MODULES | BIOLOGICAL NETWORKS | DATABASE | CANVAS | CYTOSCAPE PLUGIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | CURATION | WEB-BASED TOOL | Proteins - genetics | Computer Graphics | Protein Interaction Mapping - methods | Gene Expression | Animals | Humans | Mice | Software | Internet | Protein Interaction Maps
Journal Article
Nature Protocols, ISSN 1754-2189, 06/2015, Volume 10, Issue 6, pp. 823 - 844
Meta-analysis of gene expression data sets is increasingly performed to help identify robust molecular signatures and to gain insights into underlying... 
PATHWAYS | INNATEDB | SERVER | BIOLOGY | BIOCHEMICAL RESEARCH METHODS | CYTOSCAPE | STATE | DATA INTEGRATION | WEB-BASED TOOL | MAP | Gene Expression Profiling - methods | Meta-Analysis as Topic | Software | Gene Regulatory Networks | Computational Biology | Protein Interaction Mapping | Genetic research | Research | Gene expression | Genetic screening | Innovations
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2019, Volume 47, Issue 1, pp. 85 - 92
Abstract Gene regulatory networks (GRNs) and gene expression data form a core element of systems biology-based phenotyping. Changes in the expression of... 
CYTOSCAPE | CONSISTENCY | MODELS | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | Computational Biology
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 11/2018, Volume 46, Issue 21, pp. 11592 - 11604
Abstract RNA G-quadruplexes (rG4s) are secondary structures in mRNAs known to influence RNA post-transcriptional mechanisms thereby impacting neurodegenerative... 
TARGET | COMPLEX | 5'-UTR | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | CYTOSCAPE | TRANSLATION | IDENTIFICATION | RNA and RNA-protein complexes
Journal Article
BMC BIOINFORMATICS, ISSN 1471-2105, 04/2019, Volume 20
The 17th International NETTAB workshop was held in Palermo, Italy, on October 16-18, 2017. The special topic for the meeting was Methods, tools and platforms... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CANCER-RISK | CYTOSCAPE
Journal Article