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Neuron (Cambridge, Mass.), ISSN 0896-6273, 02/2013, Volume 77, Issue 3, pp. 472 - 484
Major outputs of the neocortex are conveyed by corticothalamic axons (CTAs), which form reciprocal connections with thalamocortical axons, and... 
MUTANT MICE | CORTICAL AXONS | THALAMOCORTICAL AXONS | GROWTH | SEMAPHORIN 3E | CENTRAL-NERVOUS-SYSTEM | GUIDANCE | CHICK HINDLIMB | CAJAL-RETZIUS CELLS | NEUROSCIENCES | CEREBRAL-CORTEX | Thyroid Nuclear Factor 1 | Age Factors | Embryo, Mammalian | Leukocyte L1 Antigen Complex - metabolism | Gene Expression Regulation, Developmental - genetics | Axons - physiology | Cerebral Cortex - cytology | Neural Pathways - physiology | DNA-Binding Proteins - metabolism | POU Domain Factors - genetics | tau Proteins - genetics | Thalamus - physiology | Contactin 2 - metabolism | Repressor Proteins - metabolism | Glycoproteins - genetics | Tumor Suppressor Proteins - metabolism | Wnt3A Protein - genetics | Membrane Proteins - genetics | Mice, Inbred C57BL | Mice, Transgenic | Nuclear Proteins - metabolism | Transcription Factors - genetics | Nerve Tissue Proteins - genetics | Homeodomain Proteins - genetics | Membrane Glycoproteins - genetics | Nerve Tissue Proteins - metabolism | S100 Calcium Binding Protein G - metabolism | Transcription Factors - metabolism | Animals | Calbindin 2 | Thalamus - cytology | Cerebral Cortex - physiology | Luminescent Proteins - genetics | Mice | Body Patterning - genetics | Luminescent Proteins - metabolism | Developmental biology | Neurons | Studies | Laboratories | Experiments | Repressor Proteins | Cerebral Cortex | Cellular Biology | Neural Pathways | tau Proteins | Life Sciences | Contactin 2 | Gene Expression Regulation, Developmental | Body Patterning | Thalamus | Membrane Glycoproteins | Luminescent Proteins | DNA-Binding Proteins | POU Domain Factors | Calcium-Binding Protein, Vitamin D-Dependent | Glycoproteins | Nerve Tissue Proteins | Nuclear Proteins | Membrane Proteins | Axons | Homeodomain Proteins | Leukocyte L1 Antigen Complex | Transcription Factors | Wnt3A Protein | Tumor Suppressor Proteins | reciprocal connections | handshake | waiting period | PlexinD1 | axon guidance | Sema3E | thalamocortical | corticothalamic
Journal Article
Molecular cell, ISSN 1097-2765, 2017, Volume 67, Issue 3, pp. 387 - 399.e5
... (DNAPKc, Ku70, and Ku80) and paraspeckle proteins (SFPQ, NONO, PSPC1, RBM14, and MATRIN3... 
HEXIM1 | DNA-PK | innate immune response | herpesvirus | paraspeckles | cGAS | NEAT1 | interferon stimulatory DNA | DEFENSE | PROTEIN | INHIBITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | SENSOR | POLYMERASE-II | 7SK RNA | BINDING | GMP-AMP SYNTHASE | P-TEFB | CELL BIOLOGY | Human Umbilical Vein Endothelial Cells - metabolism | Humans | Octamer Transcription Factors - immunology | Intracellular Signaling Peptides and Proteins - metabolism | Herpesvirus 8, Human - immunology | RNA, Long Noncoding - immunology | PTB-Associated Splicing Factor - genetics | RNA Interference | Calcium-Binding Proteins - immunology | Octamer Transcription Factors - genetics | Nucleotidyltransferases - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Signal Transduction | Membrane Proteins - genetics | RNA-Binding Proteins - immunology | PTB-Associated Splicing Factor - metabolism | Nuclear Matrix-Associated Proteins - metabolism | PTB-Associated Splicing Factor - immunology | DNA - metabolism | Host-Pathogen Interactions | Nuclear Matrix-Associated Proteins - genetics | HeLa Cells | RNA-Binding Proteins - metabolism | Calcium-Binding Proteins - genetics | RNA-Binding Proteins - genetics | Multiprotein Complexes | Human Umbilical Vein Endothelial Cells - immunology | Intracellular Signaling Peptides and Proteins - immunology | Human Umbilical Vein Endothelial Cells - virology | Interferon Regulatory Factor-3 - genetics | Ku Autoantigen - genetics | Transfection | HEK293 Cells | Membrane Proteins - metabolism | Nuclear Proteins - genetics | Octamer Transcription Factors - metabolism | Interferon Regulatory Factor-3 - immunology | Calcium-Binding Proteins - metabolism | DNA - immunology | Nuclear Matrix-Associated Proteins - immunology | Ku Autoantigen - immunology | Membrane Proteins - immunology | Nuclear Proteins - metabolism | Ku Autoantigen - metabolism | RNA, Long Noncoding - genetics | Immunity, Innate | Nuclear Proteins - immunology | DNA - genetics | Interferon Regulatory Factor-3 - metabolism | Nucleotidyltransferases - genetics | Protein Binding | Nucleotidyltransferases - immunology | RNA, Long Noncoding - metabolism | RNA sequencing | Immune response | RNA | DNA | Genetic research | Interferon | Biological response modifiers | Mass spectrometry | Human Umbilical Vein Endothelial Cells | Nuclear Matrix-Associated Proteins | Herpesvirus 8, Human | RNA-Binding Proteins | Life Sciences | Interferon Regulatory Factor-3 | Genetics | Calcium-Binding Proteins | Intracellular Signaling Peptides and Proteins | PTB-Associated Splicing Factor | Nuclear Proteins | Membrane Proteins | Nucleotidyltransferases | Ku Autoantigen | Octamer Transcription Factors | RNA, Long Noncoding
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 01/2013, Volume 110, Issue 5, pp. 1851 - 1856
A flagellin-independent caspase-1 activation pathway that does not require NAIP5 or NRLC4 is induced by the intracellular pathogen Legionella pneumophila. Here... 
Cytoskeletal Proteins | Flagellin | Immunoblotting | Legionella pneumophila | Macrophages | Adaptor Proteins, Vesicular Transport | Necrosis | Receptor, Interferon alpha-beta | Caspase 1 | Carrier Proteins | Calcium-Binding Proteins | Cytokines | Mice, Inbred C57BL | Cells, Cultured | Myeloid Differentiation Factor 88 | Mice, Knockout | Host-Pathogen Interactions | Animals | Apoptosis Regulatory Proteins | Bone Marrow Cells | Mice | Caspases | Enzyme Activation | Mutation | Apoptosis | Cell death | Innate immunity | Inflammasome | PATTERN-RECOGNITION | innate immunity | cell death | inflammasome | MULTIDISCIPLINARY SCIENCES | NLRP3 INFLAMMASOME ACTIVATION | INFECTION | RECEPTORS | Cytoskeletal Proteins - genetics | NLR Family, Pyrin Domain-Containing 3 Protein | Adaptor Proteins, Vesicular Transport - genetics | Caspase 1 - metabolism | Legionella pneumophila - genetics | Adaptor Proteins, Vesicular Transport - metabolism | Caspases - metabolism | Flagellin - genetics | Flagellin - metabolism | Apoptosis Regulatory Proteins - genetics | Cytoskeletal Proteins - metabolism | Receptor, Interferon alpha-beta - genetics | Macrophages - microbiology | Receptor, Interferon alpha-beta - metabolism | Calcium-Binding Proteins - metabolism | Cytokines - metabolism | Caspases - genetics | Myeloid Differentiation Factor 88 - genetics | Macrophages - cytology | Legionella pneumophila - metabolism | Apoptosis Regulatory Proteins - metabolism | Carrier Proteins - genetics | Macrophages - metabolism | Carrier Proteins - metabolism | Caspase 1 - genetics | CARD Signaling Adaptor Proteins | Bone Marrow Cells - microbiology | Legionella pneumophila - physiology | Myeloid Differentiation Factor 88 - metabolism | Bone Marrow Cells - metabolism | Calcium-Binding Proteins - genetics | Genetic aspects | Research | Properties | Immunological research | Biological Sciences
Journal Article
Nature (London), ISSN 1476-4687, 2016, Volume 534, Issue 7605, pp. 55 - 62
Somatic mutations have been extensively characterized in breast cancer, but the effects of these genetic alterations on the proteomic landscape remain poorly... 
PATHWAYS | HETEROGENEITY | PIK3CA MUTATIONS | PHOSPHORYLATION | MULTIDISCIPLINARY SCIENCES | GENES | BIOLOGY | RECEPTOR | EXPRESSION | SIGNATURE | REVEALS | Protein Kinases - metabolism | Focal Adhesion Kinase 1 - genetics | Receptor, Epidermal Growth Factor - genetics | Protein Kinases - genetics | Cyclin-Dependent Kinases - metabolism | Receptor, ErbB-2 - genetics | Receptors, G-Protein-Coupled - metabolism | Genomics | Humans | Gene Expression Regulation, Neoplastic | Receptor, ErbB-2 - metabolism | Phosphoproteins - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - genetics | Tumor Suppressor Protein p53 - genetics | Breast Neoplasms - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - metabolism | Breast Neoplasms - enzymology | Receptor, Epidermal Growth Factor - metabolism | Phosphoproteins - analysis | Mass Spectrometry | src-Family Kinases - metabolism | Female | Cyclin-Dependent Kinases - genetics | Focal Adhesion Kinase 1 - metabolism | Chromosomes, Human, Pair 5 - genetics | Breast Neoplasms - classification | Chromosome Deletion | p21-Activated Kinases - genetics | Signal Transduction | Molecular Sequence Annotation | Calcium-Binding Proteins - deficiency | Phosphoproteins - genetics | Mutation - genetics | S-Phase Kinase-Associated Proteins - metabolism | p21-Activated Kinases - metabolism | Phosphatidylinositol 3-Kinases - genetics | Breast Neoplasms - genetics | Class I Phosphatidylinositol 3-Kinases | Proteomics | S-Phase Kinase-Associated Proteins - genetics | Receptors, G-Protein-Coupled - genetics | src-Family Kinases - genetics | Calcium-Binding Proteins - genetics | Breast cancer | Genetic aspects | Research | Oncology, Experimental | Cancer | Physiological aspects | Methods | Mutation (Biology) | Proteins | Gene amplification | Peptides | Protein expression | Genomes | Mutation | Kinases | Deoxyribonucleic acid--DNA | Tumors
Journal Article
Nature (London), ISSN 1476-4687, 2017, Volume 545, Issue 7654, pp. 311 - 316
Nutrient signalling integrates and coordinates gene expression, metabolism and growth... 
TRANSCRIPTION FACTORS | ARABIDOPSIS ROOTS | METABOLISM | GLUCOSE | MULTIDISCIPLINARY SCIENCES | TRANSIENT GENE-EXPRESSION | CALCIUM | PROTOPLASTS | STRESS | TRANSLATION | PROTEIN-KINASES | Protein Kinases - metabolism | Plant Shoots - growth & development | Phosphorylation | Protein Kinases - genetics | Arabidopsis - growth & development | Calcium - metabolism | Transcriptome | Protein Kinases - chemistry | Biomass | Cellular Reprogramming | Arabidopsis Proteins - metabolism | Plants, Genetically Modified | Gene Expression Regulation, Plant | Transcription, Genetic | Plant Roots - growth & development | Calcium Signaling | Food | Amidohydrolases - metabolism | Calcium-Binding Proteins - chemistry | Calcium-Binding Proteins - metabolism | Amino Acid Sequence | Carbon - metabolism | Arabidopsis Proteins - genetics | Nitrogen - metabolism | Plant Roots - metabolism | Calcium-Calmodulin-Dependent Protein Kinases - genetics | Oxidation-Reduction | Signal Transduction | Amidohydrolases - genetics | Arabidopsis - metabolism | Arabidopsis - genetics | Calcium-Calmodulin-Dependent Protein Kinases - chemistry | Nitrates - metabolism | Arabidopsis Proteins - chemistry | Plant Shoots - metabolism | Calcium-Calmodulin-Dependent Protein Kinases - metabolism | Calcium-Binding Proteins - genetics | Transcription factors | Calcium | Architecture | Developmental plasticity | Nitrates | Lethality | Hormones | Plants | Gene expression | Metabolism | Calcium nitrate | Mutants | Calcium signalling | Leaves | Signal transduction | Molecular modelling | Redox reactions | Nutrients | Flowers & plants | Life Sciences
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 2008, Volume 105, Issue 29, pp. 9970 - 9975
The results of genetic studies in Arabidopsis indicate that three proteins, the RNase III DICER-Like1 (DCL1... 
Proteins | Enzymes | Treaties | MicroRNA | Double stranded RNA | RNA | Small interfering RNA | Nucleotide sequences | Protein precursors | Plants | Dicer | Biogenesis | Arabidopsis | ARABIDOPSIS-THALIANA | PLANT MICRORNA BIOGENESIS | MULTIDISCIPLINARY SCIENCES | NUCLEAR EXPORT | MICROPROCESSOR COMPLEX | biogenesis | MATURATION | DICER-LIKE PROTEINS | SMALL INTERFERING RNA | GENES | microRNA | TRANS-ACTING SIRNAS | C-ELEGANS | RNA-Binding Proteins - genetics | Insecta | Baculoviridae - genetics | MicroRNAs - metabolism | RNA, Plant - metabolism | Arabidopsis Proteins - metabolism | Intercellular Signaling Peptides and Proteins - metabolism | Serrate-Jagged Proteins | Cell Cycle Proteins - genetics | Membrane Proteins - metabolism | Calcium-Binding Proteins - metabolism | Recombinant Proteins - metabolism | Cell Line | Arabidopsis Proteins - genetics | Ribonuclease III - genetics | Ribonuclease III - metabolism | RNA Processing, Post-Transcriptional | Membrane Proteins - genetics | Cell Cycle Proteins - metabolism | Intercellular Signaling Peptides and Proteins - genetics | Recombinant Proteins - genetics | RNA, Plant - genetics | Arabidopsis - metabolism | Arabidopsis - genetics | Animals | MicroRNAs - genetics | RNA-Binding Proteins - metabolism | Calcium-Binding Proteins - genetics | Physiological aspects | Genetic aspects | Biochemistry | Research | Properties | Binding proteins | Biological Sciences
Journal Article
Nature structural & molecular biology, ISSN 1545-9993, 03/2012, Volume 19, Issue 3, pp. 328 - 336
The conserved TREX-2 transcription-export complex integrates transcription and processing of many actively transcribed nascent mRNAs with the recruitment of... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | SUS1 | MESSENGER-RNA EXPORT | PROTEIN COMPLEX | CELL BIOLOGY | SEM1 | BIOPHYSICS | VERSATILE | ELONGATION | PROTEASOME | GENES | FUNCTIONAL COMPONENT | ASSOCIATION | RNA-Binding Proteins - genetics | Humans | Porins - metabolism | Molecular Sequence Data | RNA, Messenger - metabolism | Cell Cycle Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Nucleocytoplasmic Transport Proteins - chemistry | Protein Structure, Quaternary | Cell Cycle Proteins - genetics | Conserved Sequence | Porins - chemistry | Ribonucleoproteins - genetics | Transcription, Genetic | Protein Stability | Ribonucleoproteins - chemistry | Nuclear Proteins - genetics | Calcium-Binding Proteins - chemistry | Calcium-Binding Proteins - metabolism | Protein Structure, Tertiary | Amino Acid Sequence | Porins - genetics | RNA Transport | RNA-Binding Proteins - chemistry | Cell Cycle Proteins - metabolism | Models, Molecular | Proteasome Endopeptidase Complex - chemistry | Nuclear Proteins - metabolism | Nucleic Acids - metabolism | Ribonucleoproteins - metabolism | Saccharomyces cerevisiae Proteins - genetics | Nuclear Proteins - chemistry | Nucleocytoplasmic Transport Proteins - genetics | Saccharomyces cerevisiae - chemistry | RNA, Fungal - metabolism | Proteasome Endopeptidase Complex - genetics | Sequence Alignment | Animals | Nucleocytoplasmic Transport Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Proteasome Endopeptidase Complex - metabolism | RNA-Binding Proteins - metabolism | Calcium-Binding Proteins - genetics | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Genetic aspects | Messenger RNA | Research | Gene mutations | Yeast fungi | Proteins | Yeast | Molecular biology | Ribonucleic acid--RNA | Gene expression | Genomics
Journal Article
Trends in cell biology, ISSN 0962-8924, 2016, Volume 26, Issue 4, pp. 289 - 299
Metabolism is a fundamental cellular function that can be reprogrammed by signaling pathways and oncogenes to meet cellular requirements... 
Pathology | AMPK | metabolism | Hippo pathway | mevalonate pathway | YAP/TAZ | aerobic glycolysis | Aerobic glycolysis | Metabolism | Mevalonate pathway | AMP-Activated Protein Kinases - metabolism | Cell Proliferation | TOR Serine-Threonine Kinases - metabolism | Humans | Gene Expression Regulation, Neoplastic | Intracellular Signaling Peptides and Proteins - metabolism | Phosphoproteins - metabolism | DNA-Binding Proteins - metabolism | Glycolysis - genetics | TOR Serine-Threonine Kinases - genetics | Cell Transformation, Neoplastic - genetics | Nuclear Proteins - genetics | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | Calcium-Binding Proteins - metabolism | Signal Transduction | Protein-Serine-Threonine Kinases - genetics | Nuclear Proteins - metabolism | Phosphoproteins - genetics | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Mevalonic Acid - metabolism | Cell Transformation, Neoplastic - metabolism | Transcription Factors - metabolism | Feedback, Physiological | Adaptor Proteins, Signal Transducing - genetics | Cell Line, Tumor | Adaptor Proteins, Signal Transducing - metabolism | Cell Transformation, Neoplastic - pathology | AMP-Activated Protein Kinases - genetics | Calcium-Binding Proteins - genetics | Physiological aspects | Glucose metabolism
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 2012, Volume 109, Issue 31, pp. 12817 - 12821
Journal Article