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1. Full Text Involvement of the kynurenine pathway in human glioma pathophysiology
by Adams, Seray and Teo, Charles and McDonald, Kerrie L and Zinger, Anna and Bustamante, Sonia and Lim, Chai K and Sundaram, Gayathri and Braidy, Nady and Brew, Bruce J and Guillemin, Gilles J
PLoS ONE, ISSN 1932-6203, 10/2014, Volume 9, Issue 11, p. e112945
The kynurenine pathway (KP) is the principal route of L-tryptophan (TRP) catabolism leading to the production of kynurenine (KYN), the neuroprotectants,... 
QUINOLINIC ACID | INHIBITION | METABOLISM | AMINOTRANSFERASE | MULTIDISCIPLINARY SCIENCES | INDOLEAMINE 2,3-DIOXYGENASE | T-CELL | TUMORAL IMMUNE RESISTANCE | TRYPTOPHAN DEGRADATION | IDO EXPRESSION | BRAIN | Immunohistochemistry | Indoleamine-Pyrrole 2,3,-Dioxygenase - genetics | Indoleamine-Pyrrole 2,3,-Dioxygenase - metabolism | Kynurenic Acid - blood | Gene Expression - drug effects | Humans | Kynurenine - biosynthesis | Brain Neoplasms - physiopathology | Picolinic Acids - blood | Quinolinic Acid - blood | Chromatography, High Pressure Liquid | Glial Fibrillary Acidic Protein - metabolism | Kynurenic Acid - metabolism | Carboxy-Lyases - genetics | Tryptophan - metabolism | Brain Neoplasms - metabolism | Picolinic Acids - metabolism | Antigens, CD - metabolism | Glioma - metabolism | Glioma - genetics | Kynurenine - blood | Tryptophan - blood | Carboxy-Lyases - metabolism | Tumor Cells, Cultured | Astrocytes - drug effects | Disaccharides | Cells, Cultured | Brain Neoplasms - genetics | Biosynthetic Pathways | Reverse Transcriptase Polymerase Chain Reaction | Glucuronates | Tryptophan Oxygenase - metabolism | Tryptophan Oxygenase - genetics | Antigens, Differentiation, Myelomonocytic - metabolism | Quinolinic Acid - metabolism | CD11b Antigen - metabolism | Glioma - physiopathology | Interferon-gamma - pharmacology | Astrocytes - metabolism | Tryptophan | Niacinamide | Methyl aspartate | Enzymes | Metabolites | Gliomas | NADPH | Neuroprotection | Brain | Brain tumors | Brain cancer | Glioblastoma | Tryptophan 2,3-dioxygenase | Immunity | DNA repair | Picolinic acid | Rodents | Glioma cells | L-Tryptophan | Kynurenic acid | Quinolinic acid | Deoxyribonucleic acid--DNA | Pyridines | Medical research | Hydroxylase | Adenine | Kynurenine-oxoglutarate transaminase | NAD | Acids | γ-Interferon | Nicotinamide adenine dinucleotide | Catabolism | Nicotinamide | Interferon | Tumors | Deoxyribonucleic acid | DNA
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2. Full Text Short-term time course of liver metabolic response to acute handling stress in rainbow trout, Oncorhynchus mykiss
by López-Patiño, Marcos A and Hernández-Pérez, Juan and Gesto, Manuel and Librán-Pérez, Marta and Míguez, Jesús M and Soengas, José L
Comparative Biochemistry and Physiology, Part A, ISSN 1095-6433, 02/2014, Volume 168, pp. 40 - 49
To elucidate the short-term time-course of liver metabolic response in rainbow trout to acute handling stress we subjected rainbow trout to 5 min chasing and... 
Energy metabolism | Time-course | Liver | Rainbow trout | Handling | GLYCOGEN-METABOLISM | PHYSIOLOGY | FOOD-INTAKE | BIOCHEMISTRY & MOLECULAR BIOLOGY | CORTISOL RESPONSE | GLUCOCORTICOID-RECEPTOR | ZOOLOGY | GROWTH-HORMONE | BROCKMANN BODIES | GLUCOSENSING CAPACITY | GENE-EXPRESSION | SPARUS-AURATA | ENERGY-METABOLISM | Glucose-6-Phosphatase - genetics | Glycogen Phosphorylase - genetics | Fatty Acid Synthases - metabolism | Glycogen Synthase - metabolism | Lactic Acid - blood | Stress, Physiological | Carboxy-Lyases - genetics | Fish Proteins - genetics | Glycogen - metabolism | Carboxy-Lyases - metabolism | Hydrocortisone - blood | Fatty Acid Synthases - genetics | Fatty Acids - metabolism | Oncorhynchus mykiss - metabolism | Glycogen Synthase - genetics | Gene Expression | Pyruvate Kinase - metabolism | Liver - metabolism | Fish Proteins - metabolism | Blood Glucose | Glucokinase - genetics | Glucokinase - metabolism | Glucose-6-Phosphatase - metabolism | Glycogen Phosphorylase - metabolism | Triglycerides - metabolism | Acetyl-CoA C-Acetyltransferase - genetics | Gene Expression Regulation, Enzymologic | Animals | Metabolic Networks and Pathways | Animal Husbandry | Acetyl-CoA C-Acetyltransferase - metabolism | Pyruvate Kinase - genetics | Aquaculture | Glucose metabolism | Corticosteroids | Metabolites | Trout | Glycogen | Physiological aspects | Glucose | Dextrose
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3. Full Text Proteomic and Biochemical Studies of Lysine Malonylation Suggest Its Malonic Aciduria-associated Regulatory Role in Mitochondrial Function and Fatty Acid Oxidation
by Colak, Gozde and Pougovkina, Olga and Dai, Lunzhi and Tan, Minjia and te Brinke, Heleen and Huang, He and Cheng, Zhongyi and Park, Jeongsoon and Wan, Xuelian and Liu, Xiaojing and Yue, Wyatt W and Wanders, Ronald J. A and Locasale, Jason W and Lombard, David B and de Boer, Vincent C. J and Zhao, Yingming
Molecular & cellular proteomics, ISSN 1535-9476, 2015, Volume 14, Issue 11, pp. 3056 - 3071
The protein substrates of sirtuin 5-regulated lysine malonylation (Kmal) remain unknown, hindering its functional analysis. In this study, we carried out... 
WIDESPREAD | COA | SUCCINYLATION | PHOSPHORYLATION | ACETYLATION | SUBSTRATE | BIOCHEMICAL RESEARCH METHODS | SIRT5 | COENZYME-A | IDENTIFICATION | DEFICIENCY | Malonyl Coenzyme A - genetics | Liver - pathology | Humans | Male | Sirtuins - deficiency | Methylmalonic Acid - metabolism | Carboxy-Lyases - genetics | Malonyl Coenzyme A - metabolism | Malonates - metabolism | Carboxy-Lyases - metabolism | Lysine - metabolism | Sirtuins - genetics | Fatty Acids - metabolism | Fibroblasts - metabolism | Cell Line | Oxidation-Reduction | Liver - metabolism | Metabolism, Inborn Errors - metabolism | Models, Molecular | Mitochondria - metabolism | Mitochondria - pathology | Carboxy-Lyases - deficiency | Metabolism, Inborn Errors - genetics | Mice, Knockout | Animals | Fibroblasts - cytology | Mice | Metabolism, Inborn Errors - pathology | Research | mitochondrial function | lysine malonylation | Proteomic | fatty acid oxydation
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4. Full Text Mitochondrial Overload and Incomplete Fatty Acid Oxidation Contribute to Skeletal Muscle Insulin Resistance
by Koves, Timothy R and Ussher, John R and Noland, Robert C and Slentz, Dorothy and Mosedale, Merrie and Ilkayeva, Olga and Bain, James and Stevens, Robert and Dyck, Jason R.B and Newgard, Christopher B and Lopaschuk, Gary D and Muoio, Deborah M
Cell Metabolism, ISSN 1550-4131, 2008, Volume 7, Issue 1, pp. 45 - 56
Previous studies have suggested that insulin resistance develops secondary to diminished fat oxidation and resultant accumulation of cytosolic lipid molecules... 
HUMDISEASE | SIGNALING | DEPENDENT DIABETES-MELLITUS | PHOSPHATIDYLINOSITOL 3-KINASE ACTIVITY | OBESITY | DIET | GLUCOSE-METABOLISM | MALONYL-COA | ENDOCRINOLOGY & METABOLISM | WEIGHT-LOSS | GENE-EXPRESSION | NULL MICE | HEPATIC STEATOSIS | CELL BIOLOGY | Cell Line | Glucose Tolerance Test | Oxidation-Reduction | Insulin Resistance | Rats | Lipid Metabolism | Muscle, Skeletal - metabolism | Mitochondria - metabolism | Muscle Fibers, Skeletal - metabolism | Carboxy-Lyases - genetics | Mice, Knockout | Obesity - metabolism | Obesity - pathology | Animals | Dietary Fats - administration & dosage | Carboxy-Lyases - metabolism | Mice | Muscle, Skeletal - pathology | Blood Glucose - metabolism | Fatty Acids - metabolism | Physiological aspects | Oxidation-reduction reaction | Insulin resistance | Levocarnitine | Peptide hormones | Fatty acids | Insulin
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5. Full Text The biochemistry of nitrogen mobilization: purine ring catabolism
by Werner, Andrea K and Witte, Claus-Peter
Trends in Plant Science, ISSN 1360-1385, 2011, Volume 16, Issue 7, pp. 381 - 387
The enzymatic route of purine ring catabolism has recently been completed by the discovery of several novel enzymes identified through comparative genome... 
XANTHINE DEHYDROGENASE | ARABIDOPSIS-THALIANA | BACTERIAL PLANT | ESCHERICHIA-COLI | LEAF PEROXISOMES | UREIDOGLYCOLATE UREA-LYASE | ALLANTOATE AMIDOHYDROLASE | HYDROXYISOURATE HYDROLASE | TRANSTHYRETIN-LIKE PROTEIN | PHASEOLUS-VULGARIS | PLANT SCIENCES | Hydrolases - metabolism | Hydroxysteroids - metabolism | Nitrogen - metabolism | Uric Acid - metabolism | Oxidoreductases - metabolism | Signal Transduction | Purines - metabolism | Allantoin - metabolism | Plants - enzymology | Xanthine - metabolism | Plants - metabolism | Carboxy-Lyases - metabolism | Plant Growth Regulators - metabolism | Physiological aspects | Ammonia | Enzymes | Alkaloids | Biochemistry
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6. Full Text Putrescine Alleviates Iron Deficiency via NO-Dependent Reutilization of Root Cell-Wall Fe in Arabidopsis
by Xiao Fang Zhu and Bin Wang and Wen Feng Song and Shao Jian Zheng and Ren Fang Shen
Plant Physiology, ISSN 0032-0889, 1/2016, Volume 170, Issue 1, pp. 558 - 567
Plants challenged with abiotic stress show enhanced polyamines levels. Here, we show that the polyamine putrescine (Put) plays an important role to alleviate... 
SIGNALING AND RESPONSE | FERRIC-CHELATE REDUCTASE | ACTS DOWNSTREAM | ABIOTIC STRESS | POLYAMINES | NITRIC-OXIDE | PLANTS | ACCUMULATION | ABSCISIC-ACID | ARGININE DECARBOXYLASE ACTIVITY | ALUMINUM RESISTANCE | PLANT SCIENCES | Arabidopsis Proteins - genetics | FMN Reductase - genetics | Basic Helix-Loop-Helix Transcription Factors - genetics | Plant Roots - metabolism | Plant Roots - cytology | Carboxy-Lyases - genetics | Iron - metabolism | Arabidopsis - metabolism | Polysaccharides - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Basic Helix-Loop-Helix Transcription Factors - metabolism | FMN Reductase - metabolism | Cation Transport Proteins - metabolism | Cell Wall - metabolism | Gene Expression Regulation, Plant | Cation Transport Proteins - genetics | Carboxy-Lyases - metabolism | Mutation | Nitric Oxide - metabolism | Putrescine - metabolism | Arabidopsis thaliana | Physiological aspects | Iron in the body | Putrescine | Nitric oxide
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7. Full Text The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
by Nobu, Masaru K and Narihiro, Takashi and Hideyuki, Tamaki and Qiu, Yan‐Ling and Sekiguchi, Yuji and Woyke, Tanja and Goodwin, Lynne and Davenport, Karen W and Kamagata, Yoichi and Liu, Wen‐Tso
Environmental Microbiology, ISSN 1462-2912, 12/2015, Volume 17, Issue 12, pp. 4861 - 4872
Summary How aromatic compounds are degraded in various anaerobic ecosystems (e.g. groundwater, sediments, soils and wastewater) is currently poorly understood.... 
GEN. NOV | COA | ANAEROBIC BENZOATE DEGRADATION | MICROBIAL DIVERSITY | SP. NOV | BACTERIUM | PHENOL METABOLISM | MICROBIOLOGY | DEGRADES FATTY-ACIDS | RHODOBACTER-CAPSULATUS | ENERGY-CONSERVATION | Deltaproteobacteria - metabolism | Anaerobiosis - physiology | Oxidoreductases - metabolism | Ferredoxins - metabolism | Deltaproteobacteria - classification | Formate Dehydrogenases - metabolism | Genome, Bacterial - genetics | Hydrogenase - metabolism | Phenol - metabolism | Deltaproteobacteria - genetics | Carbon-Carbon Lyases - metabolism | Carboxy-Lyases - metabolism | Electron Transport - physiology | Electrons | Formates - metabolism | Sulfites | Calcium channels | Thiols | Ecosystems | Aromatic compounds | Genomics | Physiological aspects | Water, Underground | Genetic research | Oxidoreductases | Sediments (Geology) | Transfer RNA | Metabolism | Genomes
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8. Full Text Remarkable Reproducibility of Enzyme Activity Profiles in Tomato Fruits Grown under Contrasting Environments Provides a Roadmap for Studies of Fruit Metabolism
by Benoît Biais and Camille Bénard and Bertrand Beauvoit and Sophie Colombié and Duyên Prodhomme and Guillaume Ménard and Stéphane Bernillon and Bernadette Gehl and Hélène Gautier and Patricia Ballias and Jean-Pierre Mazat and Lee Sweetlove and Michel Génard and Yves Gibon
Plant Physiology, ISSN 0032-0889, 3/2014, Volume 164, Issue 3, pp. 1204 - 1221
To assess the influence of the environment on fruit metabolism, tomato (Solatium lycopersicum 'Moneymaker') plants were grown under contrasting conditions... 
Ripening | Enzymes | Protein metabolism | Enzyme activity | Fruiting | Hexoses | Starches | Plants | BIOCHEMISTRY AND METABOLISM | Amino acid metabolism | Fruits | GLUTAMATE-DEHYDROGENASE | SUCROSE SYNTHASE | INORGANIC PYROPHOSPHATE | PHOSPHOENOLPYRUVATE CARBOXYLASE | NADP-MALIC ENZYME | ADP-GLUCOSE PYROPHOSPHORYLASE | POSTTRANSLATIONAL REDOX-MODIFICATION | INTROGRESSION LINE POPULATION | STARCH ACCUMULATION | BIOCHEMICAL-ANALYSIS | PLANT SCIENCES | Water | Lycopersicon esculentum - metabolism | Reproducibility of Results | Starch - metabolism | Metabolome | Organ Size | Lycopersicon esculentum - enzymology | Fruit - enzymology | Hexoses - metabolism | Lycopersicon esculentum - physiology | Fructokinases - metabolism | Fruit - growth & development | Lycopersicon esculentum - growth & development | Time Factors | Vacuoles - metabolism | Environment | Carboxy-Lyases - metabolism | Plant Proteins - metabolism | Fruit - metabolism | Principal Component Analysis | Cluster Analysis | Botanical research | Reproduction | Growth | Environmental aspects | Physiological aspects | Development | Physiological research | Tomatoes | Research
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9. Full Text Polyamines and heavy metal stress: the antioxidant behavior of spermine in cadmium- and copper-treated wheat leaves
by Groppa, María D and Tomaro, María L and Benavides, María P
BioMetals, ISSN 0966-0844, 4/2007, Volume 20, Issue 2, pp. 185 - 195
Polyamine metabolism, as well as spermine (Spm) antioxidant properties, were studied in wheat leaves under Cd2+ or Cu2+ stress. The oxidative damage produced... 
Life Sciences | Biochemistry, general | ADC | Oxidative stress | Physical Chemistry | APOX | SOD | ODC | EXCESS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SUNFLOWER LEAF DISCS | PUTRESCINE | METABOLISM | HYDROGEN-PEROXIDE | ACCUMULATION | SUPEROXIDE-DISMUTASE | oxidative stress | PARAQUAT TOXICITY | MEMBRANE-LIPIDS | Ornithine Decarboxylase - metabolism | Antioxidants - chemistry | Glutathione - metabolism | Glutathione Reductase - metabolism | Antioxidants - metabolism | Oxidants - metabolism | Cadmium - metabolism | Triticum | Copper - chemistry | Plant Proteins - chemistry | Copper - metabolism | Peroxidases - metabolism | Carboxy-Lyases - metabolism | Plant Proteins - metabolism | Plant Leaves - enzymology | Superoxide Dismutase - metabolism | Plant Leaves - chemistry | Oxidation-Reduction | Spermine - chemistry | Thiobarbituric Acid Reactive Substances - metabolism | Ascorbate Peroxidases | Hydrogen Peroxide - metabolism | Spermine - metabolism | Putrescine - chemistry | Cadmium - chemistry | Putrescine - metabolism | Antioxidants | Physiological aspects | Cadmium | Polymers | Wheat | Polyamines
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10. Full Text LACTB is a tumour suppressor that modulates lipid metabolism and cell state
by Keckesova, Zuzana and Donaher, Joana Liu and De Cock, Jasmine and Freinkman, Elizaveta and Lingrell, Susanne and Bachovchin, Daniel A and Bierie, Brian and Tischler, Verena and Noske, Aurelia and Okondo, Marian C and Reinhardt, Ferenc and Thiru, Prathapan and Golub, Todd R and Vance, Jean E and Weinberg, Robert A
Nature, ISSN 0028-0836, 03/2017, Volume 543, Issue 7647, pp. 681 - 686
Post-mitotic, differentiated cells exhibit a variety of characteristics that contrast with those of actively growing neoplastic cells, such as the expression... 
MUTANT MOUSE MODEL | CANCER-CELLS | PHOSPHATIDYLETHANOLAMINE | LYSOPHOSPHATIDYLETHANOLAMINE ACYLTRANSFERASE | PROTEIN | MYOGENIC DIFFERENTIATION | PHOSPHOLIPASE-D | HAMSTER OVARY CELLS | MULTIDISCIPLINARY SCIENCES | SACCHAROMYCES-CEREVISIAE | PHOSPHATIDYLSERINE BIOSYNTHESIS | Mitochondria - enzymology | Humans | Gene Expression Regulation, Neoplastic | Mitochondrial Proteins - genetics | Breast Neoplasms - metabolism | Cell Differentiation - genetics | beta-Lactamases - genetics | Mitochondrial Proteins - metabolism | Tumor Suppressor Proteins - genetics | Female | Lipid Metabolism - genetics | Carboxy-Lyases - metabolism | Membrane Proteins - metabolism | beta-Lactamases - metabolism | Tumor Suppressor Proteins - metabolism | Membrane Proteins - genetics | Down-Regulation | Mitochondria - metabolism | Mice, SCID | Animals | Breast Neoplasms - genetics | Breast Neoplasms - pathology | Cell Line, Tumor | Mice, Inbred NOD | Mice | Phosphatidylethanolamines - metabolism | Prevention | Care and treatment | Physiological aspects | Tumor suppressor genes | Gene expression | Observations | Identification and classification | Cancer | Proteins | Medical research | Musculoskeletal system | Cell growth | Phosphorylation | Rodents | Brain cancer | Protein expression | Breast cancer | Mutation | Metabolism
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11. Full Text Contribution of polyamines metabolism and GABA shunt to chilling tolerance induced by nitric oxide in cold-stored banana fruit
by Wang, Yansheng and Luo, Zisheng and Mao, Linchun and Ying, Tiejin
Food Chemistry, ISSN 0308-8146, 04/2016, Volume 197, Issue Pt A, pp. 333 - 339
Effect of exogenous nitric oxide (NO) on polyamines (PAs) catabolism, γ-aminobutyric acid (GABA) shunt, proline accumulation and chilling injury of banana... 
GABA | Proline | Polyamine | Banana fruit | Nitric oxide | Chilling injury | VICIA-FABA L | STORAGE | TOMATO FRUIT | ABIOTIC STRESS | FOOD SCIENCE & TECHNOLOGY | ACID CONTENT | PROLINE METABOLISM | NUTRITION & DIETETICS | STRESS RESPONSES | LOQUAT FRUIT | PLANTS | INDUCED ARGININE CATABOLISM | CHEMISTRY, APPLIED | Cold Temperature | Musa - enzymology | Fruit - chemistry | Proline - metabolism | gamma-Aminobutyric Acid - metabolism | Food Storage | Musa - metabolism | Fruit - enzymology | Musa - chemistry | Polyamines - metabolism | Glutamate Decarboxylase - metabolism | Carboxy-Lyases - metabolism | Plant Proteins - metabolism | Nitric Oxide - metabolism | Fruit - metabolism | Physiological aspects | Polyamines
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12. Full Text Systems-wide metabolic pathway engineering in Corynebacterium glutamicum for bio-based production of diaminopentane
by Kind, Stefanie and Jeong, Weol Kyu and Schröder, Hartwig and Wittmann, Christoph
Metabolic Engineering, ISSN 1096-7176, 2010, Volume 12, Issue 4, pp. 341 - 351
In the present work the Gram-positive bacterium was engineered into an efficient, tailor-made production strain for diaminopentane (cadaverine), a highly... 
Polyamide | Cadaverine | Lysine decarboxylase | Biopolymer | N-acetyl diaminopentane | Codon optimization | DECARBOXYLASE | IN-VIVO QUANTIFICATION | MANNHEIMIA-SUCCINICIPRODUCENS | ESCHERICHIA-COLI | FLUX ANALYSIS | L-LYSINE PRODUCTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ACID PRODUCTION | RENEWABLE RESOURCES | EXPRESSION | ALPHA-AMYLASE | Aspartate Kinase - metabolism | Homoserine Dehydrogenase - genetics | Cadaverine - biosynthesis | Pyridoxal - metabolism | Corynebacterium glutamicum - genetics | Oxaloacetic Acid - metabolism | Pyruvate Carboxylase - genetics | Pyruvate Carboxylase - metabolism | Threonine - metabolism | Amino Acid Oxidoreductases - metabolism | Carboxy-Lyases - genetics | Systems Biology | Corynebacterium glutamicum - metabolism | Point Mutation | Feedback, Physiological | Metabolic Networks and Pathways - genetics | Genetic Engineering | Phosphoenolpyruvate Carboxykinase (ATP) - metabolism | Aspartate Kinase - genetics | Carboxy-Lyases - metabolism | Lysine - metabolism | Dihydrodipicolinate Reductase - metabolism | Gene Expression Regulation, Bacterial | Homoserine Dehydrogenase - metabolism | Enzymes | Codon | Lysine | Analysis | Polyamides | Physiological aspects | Aspartate kinase
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