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2009, Methods in enzymology, ISBN 0123747767, Volume 455, 466., 2 v.
The use of thermodynamics in biological research can be equated to an energy book-keeping system. While the structure and function of a molecule is important,... 
Thermodynamics | Protein folding | Protein-protein interactions | Protein binding
Book
eLife, ISSN 2050-084X, 2015, Volume 4, Issue 4, pp. 1 - 44
The AAA+ family ATPase TRIP13 is a key regulator of meiotic recombination and the spindle assembly checkpoint, acting on signaling proteins of the conserved HORMA domain family... 
N-Ethylmaleimide-Sensitive Proteins - metabolism | Mad2 Proteins - metabolism | Molecular Chaperones - metabolism | Caenorhabditis elegans Proteins - chemistry | Humans | Crystallography, X-Ray | Phylogeny | N-Ethylmaleimide-Sensitive Proteins - genetics | Amino Acid Sequence | Gene Expression | Caenorhabditis elegans - genetics | Cell Cycle Proteins - metabolism | Molecular Chaperones - genetics | Adenosine Triphosphatases - metabolism | Models, Molecular | Recombinant Proteins - chemistry | Nuclear Proteins - chemistry | Caenorhabditis elegans - classification | Escherichia coli - genetics | Adenosine Triphosphatases - genetics | Escherichia coli Proteins - chemistry | Caenorhabditis elegans Proteins - genetics | Caenorhabditis elegans - enzymology | Adaptor Proteins, Signal Transducing - chemistry | Endopeptidase Clp - chemistry | M Phase Cell Cycle Checkpoints | Caenorhabditis elegans Proteins - metabolism | Molecular Sequence Data | Molecular Chaperones - chemistry | Cell Cycle Proteins - chemistry | Spindle Apparatus - genetics | Escherichia coli - metabolism | Cell Cycle Proteins - genetics | Carrier Proteins - chemistry | Nuclear Proteins - genetics | N-Ethylmaleimide-Sensitive Proteins - chemistry | Protein Structure, Tertiary | Recombinant Proteins - metabolism | ATPases Associated with Diverse Cellular Activities | Endopeptidase Clp - genetics | Escherichia coli Proteins - metabolism | Nuclear Proteins - metabolism | Endopeptidase Clp - metabolism | Mad2 Proteins - chemistry | Recombinant Proteins - genetics | Sequence Homology, Amino Acid | Carrier Proteins - genetics | Sequence Alignment | Animals | Carrier Proteins - metabolism | Adaptor Proteins, Signal Transducing - genetics | Mad2 Proteins - genetics | Escherichia coli Proteins - genetics | Protein Binding | Adenosine Triphosphatases - chemistry | Adaptor Proteins, Signal Transducing - metabolism | Spindle Apparatus - enzymology | Proteins | Medical research | Recombination | Software | Meiosis | Mammals | Chromosomes | DNA repair | Deoxyribonucleic acid--DNA | Adenosine triphosphatase | BASIC BIOLOGICAL SCIENCES
Journal Article
Molecular Biology of the Cell, ISSN 1059-1524, 01/2009, Volume 20, Issue 3, pp. 870 - 881
Using a bioinformatic approach, we identified a TP53INP1-related gene encoding a protein with 30... 
GATE-16 | MOLECULAR MACHINERY | GENE | MEMBRANE-TRANSPORT MODULATOR | PANCREATITIS | INHIBITORS | EXPRESSION | CONJUGATION SYSTEM | GABARAP | SUBUNIT | CELL BIOLOGY | Gene Silencing - drug effects | Microtubule-Associated Proteins - metabolism | Humans | Molecular Sequence Data | Protein Transport - drug effects | Luminescent Measurements | Phylogeny | Autophagy - drug effects | Protein Binding - drug effects | Cloning, Molecular | Conserved Sequence | Carrier Proteins - chemistry | Membrane Proteins - metabolism | Phagosomes - drug effects | Beclin-1 | Amino Acid Sequence | Cell Line | Heat-Shock Proteins - metabolism | Phagosomes - metabolism | Nuclear Proteins - metabolism | Nuclear Proteins - chemistry | Sirolimus - pharmacology | Apoptosis Regulatory Proteins - metabolism | Animals | Carrier Proteins - metabolism | Mice | Adaptor Proteins, Signal Transducing - metabolism | Heat-Shock Proteins - chemistry | Heat-Shock Proteins: chemistry,metabolism | Membrane Proteins: metabolism | Protein Binding: drug effects | Gene Silencing: drug effects | Adaptor Proteins, Signal Transducing: metabolism | Life Sciences | Phagosomes: drug effects,metabolism | Apoptosis Regulatory Proteins: metabolism | Nuclear Proteins: chemistry,metabolism | Autophagy: drug effects | Protein Transport: drug effects | Microtubule-Associated Proteins: metabolism | Sirolimus: pharmacology | Carrier Proteins: chemistry,metabolism | Other
Journal Article
The Journal of biological chemistry, ISSN 1083-351X, 2017, Volume 292, Issue 31, pp. 12754 - 12763
The biogenesis of iron-sulfur (Fe/S) proteins in eukaryotes is a multistage, multicompartment process that is essential for a broad range of cellular functions, including genome maintenance, protein translation, energy conversion... 
4FE-4S CLUSTERS | acyl carrier protein (ACP) | cysteine desulfurase | fatty acid metabolism | BIOCHEMISTRY & MOLECULAR BIOLOGY | MONOTHIOL GLUTAREDOXINS FUNCTION | FUNCTIONAL-CHARACTERIZATION | glutaredoxin | mitochondrial disease | frataxin | ACYL CARRIER PROTEIN | ferredoxin | metal biology | chaperone | INTERACTING PROTEIN | ASSEMBLY MACHINERY | AZOTOBACTER-VINELANDII (NIF)ISCA | FE-S PROTEINS | SCAFFOLD PROTEIN | lipoic acid | Mitochondria - enzymology | Adrenodoxin - genetics | Species Specificity | Humans | Protein Multimerization | Adrenodoxin - metabolism | Iron-Sulfur Proteins - genetics | Iron-Binding Proteins - chemistry | Mitochondrial Proteins - genetics | Iron-Sulfur Proteins - chemistry | Iron-Binding Proteins - metabolism | Mitochondrial Proteins - metabolism | Apoenzymes - metabolism | Sulfurtransferases - chemistry | Acyl Carrier Protein - metabolism | Models, Molecular | Sulfurtransferases - genetics | Mitochondria - metabolism | Saccharomyces cerevisiae Proteins - genetics | Protein Folding | Protein Transport | Gene Expression Regulation, Enzymologic | Acyl Carrier Protein - chemistry | Animals | Models, Biological | Acyl Carrier Protein - genetics | Apoenzymes - genetics | Mitochondrial Proteins - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Apoenzymes - chemistry | Adrenodoxin - chemistry | Iron-Binding Proteins - genetics | Protein Conformation | Iron-Sulfur Proteins - metabolism | Sulfurtransferases - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Minireviews
Journal Article
Molecular cell, ISSN 1097-2765, 2005, Volume 17, Issue 3, pp. 393 - 403
Apoptosis is initiated when Bcl-2 and its prosurvival relatives are engaged by proapoptotic BH3-only proteins via interaction of its BH3 domain with a groove on the Bcl-2-like proteins... 
CYTOCHROME-C | COMPLEX | SURVIVAL FACTOR | BIOCHEMISTRY & MOLECULAR BIOLOGY | MITOCHONDRIA | BIM | RELEASE | PEPTIDE | CELL-DEATH | FAMILY | MEMBER | CELL BIOLOGY | Humans | Molecular Sequence Data | Proto-Oncogene Proteins - chemistry | Neoplasm Proteins - metabolism | Genetic Complementation Test | Proto-Oncogene Proteins c-bcl-2 - metabolism | Bcl-2-Like Protein 11 | Carrier Proteins - chemistry | Proto-Oncogene Proteins c-bcl-2 - chemistry | Membrane Proteins - metabolism | Neoplasm Proteins - genetics | Peptide Fragments - genetics | Cell Survival - physiology | Binding, Competitive | Protein Structure, Tertiary | Proto-Oncogene Proteins - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | bcl-X Protein | Peptide Fragments - metabolism | Membrane Proteins - genetics | Models, Molecular | Recombinant Proteins - chemistry | Neoplasm Proteins - chemistry | Proto-Oncogene Proteins - genetics | Recombinant Proteins - genetics | Proteins - genetics | Sequence Homology, Amino Acid | Carrier Proteins - genetics | Peptide Fragments - chemistry | Animals | Apoptosis Regulatory Proteins | Carrier Proteins - metabolism | Proteins - metabolism | Membrane Proteins - chemistry | Models, Biological | Myeloid Cell Leukemia Sequence 1 Protein | Biosensing Techniques | Ligands | Mice | Apoptosis - physiology | Proteins - chemistry | In Vitro Techniques | Proto-Oncogene Proteins c-bcl-2 - genetics
Journal Article
Molecular cell, ISSN 1097-2765, 2019, Volume 74, Issue 6, pp. 1175 - 1188.e9
The condensin protein complex plays a key role in the structural organization of genomes... 
condensin | cohesin | SMC protein complex | ABC ATPase | genome organization | mitotic chromosome | structural biology | DNA loop extrusion | MOLECULAR-REPLACEMENT | FULLY-AUTOMATIC CHARACTERIZATION | STRUCTURE REFINEMENT | DATA-COLLECTION | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | COHESIN RING | CHROMOSOME CONDENSATION | PROTEIN COMPLEXES | CRYSTALLOGRAPHY | DNA EXIT GATE | CELL BIOLOGY | Humans | Crystallography, X-Ray | Multiprotein Complexes - genetics | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | Adenosine Triphosphate - metabolism | Binding Sites | Protein Subunits - genetics | Amino Acid Sequence | Gene Expression | Chromosomal Proteins, Non-Histone - metabolism | Adenosine Triphosphatases - metabolism | Models, Molecular | DNA - metabolism | Recombinant Fusion Proteins - chemistry | Saccharomyces cerevisiae Proteins - genetics | Nuclear Proteins - chemistry | DNA-Binding Proteins - chemistry | DNA - chemistry | Multiprotein Complexes - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Recombinant Fusion Proteins - genetics | Adenosine Triphosphatases - genetics | HeLa Cells | Saccharomyces cerevisiae Proteins - chemistry | Saccharomyces cerevisiae - genetics | Protein Multimerization | Recombinant Fusion Proteins - metabolism | Protein Subunits - metabolism | DNA-Binding Proteins - metabolism | Chromosomes - metabolism | Carrier Proteins - chemistry | Protein Interaction Domains and Motifs | Nuclear Proteins - genetics | Protein Conformation, alpha-Helical | Nuclear Proteins - metabolism | DNA-Binding Proteins - genetics | Chaetomium - genetics | Chromosomal Proteins, Non-Histone - genetics | DNA - genetics | Sequence Homology, Amino Acid | Carrier Proteins - genetics | Chaetomium - metabolism | Chromosomes - ultrastructure | Sequence Alignment | Carrier Proteins - metabolism | Protein Binding | Adenosine Triphosphatases - chemistry | Protein Subunits - chemistry | Adenosine Triphosphate - chemistry | Chromosomal Proteins, Non-Histone - chemistry | Proteins | Atoms | Genomics | Cells | Adenosine triphosphatase
Journal Article
PLoS computational biology, ISSN 1553-7358, 2006, Volume 2, Issue 8, pp. e100 - 0901
Recent proteome-wide screening approaches have provided a wealth of information about interacting proteins in various organisms... 
UNSTRUCTURED PROTEINS | DATABASE | RECOGNITION | PROTEOME | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | INTERACTION MAP | PREDICTIONS | INTERACTION NETWORKS | GENE ONTOLOGY | SACCHAROMYCES-CEREVISIAE | BINDING | Caenorhabditis elegans - chemistry | ELAV-Like Protein 2 | Drosophila Proteins - classification | Saccharomyces cerevisiae - genetics | Caenorhabditis elegans Proteins - chemistry | Humans | Ligases - genetics | Amino Acids - chemistry | Caenorhabditis elegans Proteins - metabolism | ELAV Proteins - classification | Ligases - chemistry | Drosophila Proteins - metabolism | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | Saccharomyces cerevisiae - metabolism | Ligases - classification | Carrier Proteins - chemistry | ELAV Proteins - chemistry | Carrier Proteins - classification | Protein Structure, Tertiary | Saccharomyces cerevisiae Proteins - classification | Caenorhabditis elegans - metabolism | Caenorhabditis elegans - genetics | Computational Biology | ELAV Proteins - metabolism | Ligases - metabolism | Models, Molecular | Drosophila Proteins - chemistry | Saccharomyces cerevisiae Proteins - genetics | Saccharomyces cerevisiae - chemistry | Carrier Proteins - genetics | Caenorhabditis elegans Proteins - classification | Animals | Carrier Proteins - metabolism | Drosophila melanogaster - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Drosophila Proteins - genetics | Caenorhabditis elegans Proteins - genetics | ELAV Proteins - genetics | Saccharomyces cerevisiae Proteins - chemistry | Eukaryotes | Genetic aspects | Brewer's yeast | Analysis | Drosophila | Proteins | Confidence intervals | Genetics | Hypotheses | Organisms | Network hubs | Caenorhabditis | Bioinformatics - Computational Biology | Saccharomyces | Homo (Human) | Molecular Biology - Structural Biology
Journal Article
Annual review of biochemistry, ISSN 0066-4154, 6/2017, Volume 86, Issue 1, pp. 685 - 714
... >1,000 different mitochondrial proteins are synthesized as precursors in the cytosol and are imported into mitochondria by five transport pathways... 
outer membrane | mitochondrial architecture | inner membrane | protein sorting | translocase | preprotein | Inner membrane | Preprotein | Protein sorting | Translocase | Outer membrane | Mitochondrial architecture | RESPIRATORY-CHAIN | DISULFIDE RELAY SYSTEM | PRESEQUENCE TRANSLOCASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | SMALL TIM PROTEINS | CYTOCHROME-C REDUCTASE | TAIL-ANCHORED PROTEINS | OUTER-MEMBRANE PROTEINS | BETA-BARREL PROTEINS | INNER-MEMBRANE | INTERMEMBRANE SPACE PROTEINS | Protein Precursors - chemistry | Humans | Eukaryotic Cells - metabolism | Isoenzymes - chemistry | Mitochondrial Proteins - genetics | Mitochondria - ultrastructure | Mitochondrial Membrane Transport Proteins - genetics | Organelle Biogenesis | Isoenzymes - metabolism | Mitochondrial Proteins - metabolism | Eukaryotic Cells - ultrastructure | Carrier Proteins - chemistry | Protein Conformation, alpha-Helical | Gene Expression | Mitochondrial Membrane Transport Proteins - chemistry | Mitochondrial Membrane Transport Proteins - metabolism | Protein Precursors - genetics | Isoenzymes - genetics | Mitochondria - metabolism | Mitochondrial Membranes - metabolism | Protein Precursors - metabolism | Protein Transport | Carrier Proteins - genetics | Carrier Proteins - metabolism | Protein Conformation, beta-Strand | Mitochondrial Membranes - ultrastructure | Mitochondrial Proteins - chemistry | Physiological aspects | Mitochondria | Genetic aspects | Research | Carrier proteins
Journal Article