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1. Full Text Enzymatic cell wall degradation of Chlorella vulgaris and other microalgae for biofuels production
by Henri G. Gerken and Bryon Donohoe and Eric P. Knoshaug
Planta, ISSN 0032-0935, 1/2013, Volume 237, Issue 1, pp. 239 - 253
Cell walls of microalgae consist of a polysaccharide and glycoprotein matrix providing the cells with a formidable defense against its environment. We... 
Enzymes | Cell wall components | Cell growth | Cell walls | Algae | Lipids | Cell membranes | Microalgae | Polymers | Biofuels | Life Sciences | Nitrogen depletion | Forestry | Agriculture | Ecology | Permeability | Growth inhibition | Plant Sciences | Lysozyme | GREEN MICROALGAE | SUGAR COMPOSITION | CHLOROPHYTA | PLANT SCIENCES | ACIDIC POLYSACCHARIDE | EXTRACTION | ALGAE | RESISTANCE | DIVERSITY | PHYTOPLANKTON | CONSTITUENTS | Chlorella vulgaris - metabolism | Microscopy, Electron, Transmission | RNA, Ribosomal, 18S - genetics | Microalgae - metabolism | Glucuronidase - metabolism | Glycoproteins - metabolism | Cell Membrane Permeability | Molecular Sequence Data | Chitinases - metabolism | Muramidase - metabolism | Sequence Homology, Nucleic Acid | Polysaccharides - metabolism | Polygalacturonase - metabolism | Chlorella vulgaris - growth & development | Cellulases - metabolism | Flow Cytometry | Base Sequence | Cell Wall - metabolism | Sulfatases - metabolism | Microalgae - genetics | Cell Wall - ultrastructure | Chlorella vulgaris - genetics | Enzymes - metabolism | Polysaccharides | Electron microscopy | Biomass energy | Index Medicus
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2. Full Text Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus - production of extracellular enzymes and characterization of the major cellulases
by Valaskova, Vendula and Baldrian, Petr
Microbiology, ISSN 1350-0872, 12/2006, Volume 152, Issue 12, pp. 3613 - 3622
Laboratory of Biochemistry of Wood-Rotting Fungi, Institute of Microbiology, Academy of Sciences of the Czech Republic, Víde ská 1083, 14220, Prague 4, Czech... 
PHANEROCHAETE-CHRYSOSPORIUM | BASIDIOMYCETE GLOEOPHYLLUM-TRABEUM | CELLOBIOSE DEHYDROGENASE | CADMIUM | ENDOGLUCANASES | PURIFICATION | MICROBIOLOGY | LENZITES-TRABEA | PLEUROTUS-OSTREATUS | ROTTING FUNGUS | BETA-GLUCOSIDASE | Fungal Proteins - chemistry | Temperature | Molecular Weight | Polyporales - enzymology | Substrate Specificity | Triticum - metabolism | Cellulases - metabolism | Cellulose 1,4-beta-Cellobiosidase - metabolism | Lignin - metabolism | Isoelectric Point | Fungal Proteins - isolation & purification | Glucan 1,4-beta-Glucosidase - biosynthesis | Endo-1,4-beta Xylanases - metabolism | Enzyme Inhibitors - pharmacology | Enzyme Stability | Cellobiose - metabolism | Cellulases - chemistry | Glucose - pharmacology | beta-Mannosidase - metabolism | Oligosaccharides - metabolism | Polyporales - metabolism | Cellulases - isolation & purification | Polysaccharides - metabolism | Xylosidases - metabolism | Glucose - metabolism | Kinetics | Carboxymethylcellulose Sodium - metabolism | Cellulose - metabolism | Fungal Proteins - metabolism | Hydrogen-Ion Concentration | Physiological aspects | Genetic research | Genetic aspects | Oligosaccharides | Parasitic diseases | Index Medicus
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3. Full Text A lytic polysaccharide monooxygenase with broad xyloglucan specificity from the brown-rot fungus Gloeophyllum trabeum and its action on cellulose-xyloglucan complexes
by Kojima, Yuka and Várnai, Anikó and Ishida, Takuya and Sunagawa, Naoki and Petrovic, Dejan M and Igarashi, Kiyohiko and Jellison, Jody and Goodell, Barry and Alfredsen, Gry and Westereng, Bjørge and Eijsink, Vincent G.H and Yoshida, Makoto
Applied and Environmental Microbiology, ISSN 0099-2240, 2016, Volume 82, Issue 22, pp. 6557 - 6572
Fungi secrete a set of glycoside hydrolases and lytic polysaccharide monooxygenases (LPMOs) to degrade plant polysaccharides. Brown-rot fungi, such as... 
SUBSTRATE-SPECIFICITY | ELECTRON-TRANSFER | CELLOBIOSE DEHYDROGENASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE ALIGNMENT | PLANT-CELL WALL | PICHIA-PASTORIS | MICROBIOLOGY | FUNCTIONAL-CHARACTERIZATION | RECALCITRANT POLYSACCHARIDES | OXIDATIVE-DEGRADATION | NEUROSPORA-CRASSA | Viscosity | Chromatography, Ion Exchange | Xylans - metabolism | Mixed Function Oxygenases - metabolism | Neurospora crassa - metabolism | Fungal Proteins - genetics | Wood - metabolism | Basidiomycota - metabolism | Polysaccharides - metabolism | Neurospora crassa - enzymology | Cellulase - metabolism | Lignin - metabolism | Basidiomycota - enzymology | Cell Wall - metabolism | Mass Spectrometry | Pichia - genetics | Basidiomycota - genetics | Mixed Function Oxygenases - isolation & purification | Wood - microbiology | Glucans - metabolism | Cellulose - metabolism | Fungal Proteins - metabolism | Oxidases | Physiological aspects | Research | Cell death | Fungi, Phytopathogenic | Fungi | Carbohydrates | Microbiology | Mass spectrometry | Cellulose fibers | Chromatography | Index Medicus
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4. Full Text CESA TRAFFICKING INHIBITOR Inhibits Cellulose Deposition and Interferes with the Trafficking of Cellulose Synthase Complexes and Their Associated Proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1
by Natasha Worden and Thomas E. Wilkop and Victor Esteva Esteve and Richard Jeannotte and Rahul Lathe and Samantha Vernhettes and Bart Weimer and Glenn Hicks and Jose Alonso and John Labavitch and Staffan Persson and David Ehrhardt and Georgia Drakakaki
Plant Physiology, ISSN 0032-0889, 2/2015, Volume 167, Issue 2, pp. 381 - 393
Cellulose synthase complexes (CSCs) at the plasma membrane (PM) are aligned with cortical microtubules (MTs) and direct the biosynthesis of cellulose. The... 
Hypocotyls | Cell growth | Cell walls | Microtubules | Polymerization | Biology | Biosynthesis | Plants | Plant cells | Seedlings | CELL BIOLOGY | CORTICAL MICROTUBULES | FUNCTIONAL ASSOCIATION | RIPENING FRUIT | ANISOTROPIC CELL EXPANSION | WALL METABOLISM | GOLGI-APPARATUS | ARABIDOPSIS | GENETIC-EVIDENCE | MICROFIBRILS | PLASMA-MEMBRANE | PLANT SCIENCES | Arabidopsis - enzymology | Arabidopsis - growth & development | Dinitrobenzenes - pharmacology | Protein Transport - drug effects | Arabidopsis Proteins - metabolism | Glucosyltransferases - metabolism | Multiprotein Complexes - metabolism | Microtubules - metabolism | Cellulase - metabolism | Microtubules - drug effects | Benzamides - pharmacology | Cell Membrane - metabolism | Hypocotyl - metabolism | Membrane Proteins - metabolism | Cell Membrane - drug effects | Green Fluorescent Proteins - metabolism | Arabidopsis - cytology | Enzyme Inhibitors - pharmacology | Arabidopsis - metabolism | Carrier Proteins - metabolism | Anisotropy | Cell Compartmentation - drug effects | Glucose - metabolism | Hypocotyl - drug effects | Cellulose - metabolism | Sulfanilamides - pharmacology | Index Medicus | Life Sciences
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5. Full Text Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins
by Elizabeth A. Znameroski and Samuel T. Coradetti and Christine M. Roche and Jordan C. Tsai and Anthony T. Iavarone and Jamie H. D. Cate and N. Louise Glass
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2012, Volume 109, Issue 16, pp. 6012 - 6017
Neurospora crassa colonizes burnt grasslands in the wild and metabolizes both cellulose and hemicellulose from plant cell walls. When switched from a favored... 
Fungi | Regulon | Enzymes | Trichoderma | Gene induction | Genes | Neurospora crassa | Gene expression regulation | Biofuels | Plant cells | FUNGUS TRICHODERMA-REESEI | PHANEROCHAETE-CHRYSOSPORIUM | ASPERGILLUS-NIDULANS | SOPHOROSE | MULTIDISCIPLINARY SCIENCES | GENES | HYPOCREA-JECORINA | CELLULASE INDUCTION | FILAMENTOUS FUNGI | BETA-GLUCOSIDASE | EXPRESSION | Gene Expression Regulation, Enzymologic - drug effects | Tetroses - metabolism | Cellulase - genetics | Neurospora crassa - metabolism | Gene Expression Profiling | Phylogeny | Gene Expression Regulation, Fungal - drug effects | Cellulase - metabolism | Cellulases - metabolism | Lignin - metabolism | Cellulases - classification | Cellobiose - pharmacology | Gene Deletion | Mass Spectrometry | Dextrins - pharmacology | Cellulose - analogs & derivatives | Cellulases - genetics | Tetroses - pharmacology | Cellobiose - metabolism | Fungal Proteins - genetics | Trioses - metabolism | Reverse Transcriptase Polymerase Chain Reaction | Trioses - pharmacology | Neurospora crassa - genetics | Dextrins - metabolism | Lignin - pharmacology | Mutation | Cellulose - pharmacology | Cellulose - metabolism | Cluster Analysis | Fungal Proteins - metabolism | Physiological aspects | Dextrins | Neurospora | Cellulose | Grasslands | Gene expression | Enzyme kinetics | Index Medicus | hemicellulose | Sucrose | Secretion | Data processing | beta -Glucosidase | cellobiose | Gene deletion | Repressors | Cellulase | Carbon sources | Catabolites | Biological Sciences
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6. Full Text Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
by Matthias Hess and Alexander Sczyrba and Rob Egan and Tae-Wan Kim and Harshal Chokhawala and Gary Schroth and Shujun Luo and Douglas S. Clark and Feng Chen and Tao Zhang and Roderick I. Mackie and Len A. Pennacchio and Susannah G. Tringe and Axel Visel and Tanja Woyke and Zhong Wang and Edward M. Rubin and Joint Genome Institute (JGI)
Science, ISSN 0036-8075, 1/2011, Volume 331, Issue 6016, pp. 463 - 467
The paucity of enzymes that efficiently deconstruct plant polysaccharides represents a major bottleneck for industrial-scale conversion of cellulosic biomass... 
Datasets | Enzymes | Metagenomics | Microorganisms | Databases | REPORTS | Rumen | Genomes | Biofuels | Scaffolds | Sequencing | BIOFUELS | ONE-CELL | MULTIDISCIPLINARY SCIENCES | PAN-GENOME | TIME | BACTERIAL | IONIC LIQUIDS | SWITCHGRASS | CELLULOSE | Cellulase - genetics | Bacterial Proteins - chemistry | Metagenomics - methods | Molecular Sequence Data | Biomass | Cellulase - metabolism | Cellulases - metabolism | Cellulose 1,4-beta-Cellobiosidase - metabolism | Rumen - microbiology | Cellulases - genetics | Amino Acid Sequence | Genes, Bacterial | Bacteria - metabolism | Genome, Bacterial | Poaceae - microbiology | Cellulose 1,4-beta-Cellobiosidase - genetics | Molecular Sequence Annotation | Bacterial Proteins - genetics | Carbohydrate Metabolism | Cellulases - chemistry | Bacteria - genetics | Sequence Analysis, DNA | Cattle - microbiology | Bacteria - isolation & purification | Animals | Rumen - metabolism | Bacteria - enzymology | Bacterial Proteins - metabolism | Metagenome | Cellulose - metabolism | Cattle | Genetic aspects | Research | Properties | Identification and classification | Genomics | Cellulose | Index Medicus
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7. Full Text Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
by Jeremy J. Minty and Marc E. Singer and Scott A. Scholz and Chang-Hoon Bae and Jung-Ho Ahn and Clifton E. Foster and James C. Liao and Xiaoxia Nina Lin and Great Lakes Bioenergy Research Center (GLBRC)
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2013, Volume 110, Issue 36, pp. 14592 - 14597
Synergistic microbial communities are ubiquitous in nature and exhibit appealing features, such as sophisticated metabolic capabilities and robustness. This... 
Hydrolysis | Enzymes | Cell growth | Sensitivity analysis | Biomass production | Ecology | Biofuels | Fermentation | Modeling | Ecological engineering | Lignocellulosic biofuel | Renewable energy | Consolidated bioprocessing | XYLOSE | lignocellulosic biofuel | consolidated bioprocessing | TRICHODERMA-REESEI | STRATEGY | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | BIOFUELS | renewable energy | MICROBES | GLUCOSE | FERMENTATION | ETHANOL | STRAIN | Butanols - metabolism | Bacteria - metabolism | Reproducibility of Results | Biomass | Oligosaccharides - metabolism | Fungi - metabolism | Microbial Consortia | Bacteria - growth & development | Algorithms | Cellulase - metabolism | Lignin - metabolism | Trichoderma - growth & development | Models, Biological | Escherichia coli - metabolism | Industrial Microbiology - methods | Escherichia coli - growth & development | Fungi - growth & development | Cellulose - metabolism | Fungal Proteins - metabolism | Trichoderma - metabolism | Bioengineering | Synthesis | Research | Biomass energy | Organic compounds | Fungi | Biotechnology | E coli | Cellulose | Index Medicus | Biological Sciences | Physical Sciences
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8. Full Text Cellodextrin Transport in Yeast for Improved Biofuel Production
by Jonathan M. Galazka and Chaoguang Tian and William T. Beeson and Bruno Martinez and N. Louise Glass and Jamie H. D. Cate
Science, ISSN 0036-8075, 10/2010, Volume 330, Issue 6000, pp. 84 - 86
Fungal degradation of plant biomass may provide insights for improving cellulosic biofuel production. We show that the model cellulolytic fungus Neurospora... 
Fungi | Yeasts | Cell growth | Ethanol | REPORTS | Saccharification | Plants | Fermentation | Biofuels | Sugars | Plant cells | FUEL ETHANOL-PRODUCTION | BIOMASS | MULTIDISCIPLINARY SCIENCES | FERMENTATION | HYDROLYSIS | DEGRADATION | MECHANISMS | SIMULTANEOUS SACCHARIFICATION | Ethanol - metabolism | Neurospora crassa - growth & development | Saccharomyces cerevisiae - genetics | Cellobiose - metabolism | Neurospora crassa - metabolism | Biomass | Fungal Proteins - genetics | Saccharomyces cerevisiae - metabolism | Cellulase - metabolism | Genetic Engineering | Biological Transport | Membrane Transport Proteins - genetics | Neurospora crassa - genetics | Saccharomyces cerevisiae Proteins - metabolism | beta-Glucosidase - metabolism | Membrane Transport Proteins - metabolism | Dextrins - metabolism | Kinetics | Saccharomyces cerevisiae - growth & development | Cellulose - analogs & derivatives | Cellulose - metabolism | Fungal Proteins - metabolism | Yeast fungi | Biomass energy | Biological transport | Physiological aspects | Research | Dextrins | Health aspects | Yeast | Microbiology | Biodiesel fuels | Cellulose | Biochemistry | Ethyl alcohol | Transport | Fuels | Index Medicus
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9. Full Text Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
by Aboushadi, Nahla and Mathur, Eric J and Cayouette, Michelle and Hugenholtz, Philip and Sorek, Rotem and Rigoutsos, Isidore and Richardson, Toby H and Rubin, Edward M and Warnecke, Falk and Djordjevic, Gordana and Chang, Cathy and Murillo, Catalina and Tringe, Susannah G and Szeto, Ernest and Matson, Eric G and Platt, Darren and Hernández, Myriam and Martin, Hector Garcia and Ottesen, Elizabeth A and Kunin, Victor and Robertson, Dan E and McHardy, Alice C and Ivanova, Natalia and Stege, Justin T and Madejska, Julita and Ghassemian, Majid and Leadbetter, Jared R and Kyrpides, Nikos C and Zhang, Xinning and Barry, Kerrie and Mikhailova, Natalia and Acosta, Luis G and Podar, Mircea and Dalevi, Daniel and Tamayo, Giselle and Green, Brian D and Kirton, Edward and Luginbühl, Peter and Salamov, Asaf
Nature, ISSN 0028-0836, 11/2007, Volume 450, Issue 7169, pp. 560 - 565
From the standpoints of both basic research and biotechnology, there is considerable interest in reaching a clearer understanding of the diversity of... 
SYSTEM | NITROGEN-FIXATION | GENE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | GUT | SPECIES RICHNESS | CLASSIFICATION | LIGNOCELLULOSE | MULTIPLE SEQUENCE ALIGNMENT | CELLULASES | Xylans - metabolism | Genes, Bacterial - genetics | Bioelectric Energy Sources | Genomics | Glycoside Hydrolases - genetics | Molecular Sequence Data | Costa Rica | Lignin - metabolism | Polymerase Chain Reaction | Glycoside Hydrolases - chemistry | Symbiosis | Carbon - metabolism | Isoptera - microbiology | Bacteria - metabolism | Catalytic Domain | Wood - metabolism | Bacteria - genetics | Hydrolysis | Genome, Bacterial - genetics | Bacteria - isolation & purification | Animals | Intestines - microbiology | Models, Biological | Wood - chemistry | Bacteria - enzymology | Glycoside Hydrolases - metabolism | Isoptera - metabolism | Cellulose - metabolism | Microbiology | Wood | Catalysts | Termites | Bacteria | Biochemistry | Index Medicus
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10. Full Text Synergistic action of recombinant accessory hemicellulolytic and pectinolytic enzymes to Trichoderma reesei cellulase on rice straw degradation
by Laothanachareon, Thanaporn and Bunterngsook, Benjarat and Suwannarangsee, Surisa and Eurwilaichitr, Lily and Champreda, Verawat
Bioresource Technology, ISSN 0960-8524, 12/2015, Volume 198, pp. 682 - 690
Synergism between core cellulases and accessory hydrolytic/non-hydrolytic enzymes is the basis of efficient hydrolysis of lignocelluloses. In this study, the... 
Accessory enzymes | Lignocellulose | Aspergillus aculeatus | Cellulase | Mixture design | XYLANASE | METHYLESTERASE | ENERGY & FUELS | HYDROLYSIS | ALPHA-L-ARABINOFURANOSIDASE | AGRICULTURAL ENGINEERING | CLONING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOMASS | PURIFICATION | SEQUENCE | EXPRESSION | Recombinant Proteins - metabolism | Endo-1,4-beta Xylanases - metabolism | Oryza - metabolism | Glycoside Hydrolases - genetics | Endo-1,4-beta Xylanases - genetics | Lignin - chemistry | Recombinant Proteins - genetics | Trichoderma - enzymology | Hydrolysis | Pichia - metabolism | Cellulase - metabolism | Cellulases - metabolism | Lignin - metabolism | Plant Shoots - metabolism | Enzymes - genetics | Pichia - genetics | Carboxylic Ester Hydrolases - genetics | Glycoside Hydrolases - metabolism | Aspergillus - enzymology | Enzymes - metabolism | Carboxylic Ester Hydrolases - metabolism | Enzymes | Pets | Analysis | Genetically modified organisms | Pectin | Genetic engineering | Glucose | Dextrose | Index Medicus
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11. Full Text Saccharification of polysaccharide content of palm kernel cake using enzymatic catalysis for production of biobutanol in acetone–butanol–ethanol fermentation
by Shukor, Hafiza and Abdeshahian, Peyman and Al-Shorgani, Najeeb Kaid Nasser and Hamid, Aidil Abdul and Rahman, Norliza A and Kalil, Mohd Sahaid
Bioresource Technology, ISSN 0960-8524, 02/2016, Volume 202, pp. 206 - 213
In this work, hydrolysis of cellulose and hemicellulose content of palm kernel cake (PKC) by different types of hydrolytic enzymes was studied to evaluate... 
Palm kernel cake | Butanol production | Clostridium saccharoperbutylacetonicum N1-4 | Fermentable sugars | Enzyme treatment | Clostridium saccharoperbutylacetonicum | CORN FIBER | ENERGY & FUELS | SUGARS | HYDROLYSATE | N1-4 | AGRICULTURAL ENGINEERING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CLOSTRIDIUM-SACCHAROPERBUTYLACETONICUM N1-4 | RICE STRAW | OPTIMIZATION | HOT-WATER PRETREATMENT | Butanols - metabolism | Ethanol - metabolism | Carbohydrate Metabolism | Acetone - metabolism | Fermentation | Polysaccharides - metabolism | Hydrolysis | Cellulase - metabolism | Sucrose - metabolism | beta-Glucosidase - metabolism | Clostridium - metabolism | Catalysis | 1-Butanol - metabolism | Arecaceae - chemistry | Arecaceae - metabolism | Cellulose - metabolism | Solid Waste | Enzymes | Polysaccharides | Usage | Alcohol, Denatured | Alcohol | Acetone | Index Medicus
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12. Full Text Evaluation of multifarious plant growth promoting traits, antagonistic potential and phylogenetic affiliation of rhizobacteria associated with commercial tea plants grown in Darjeeling, India
by Dutta, Jintu and Thakur, Debajit
PLoS ONE, ISSN 1932-6203, 08/2017, Volume 12, Issue 8, pp. e0182302 - e0182302
Plant growth promoting rhizobacteria (PGPR) are studied in different agricultural crops but the interaction of PGPR of tea crop is not yet studied well. In the... 
GENETIC DIVERSITY | CHITINASES | FIELDS | PSEUDOMONAS | MULTIDISCIPLINARY SCIENCES | BIOCONTROL | DISEASE | DESERT | INFECTION | BACTERIAL | RHIZOSPHERE | Cellulase - genetics | Glycoside Hydrolases - genetics | Camellia sinensis - growth & development | Chitinases - metabolism | RNA, Ribosomal, 16S - classification | DNA, Fungal - isolation & purification | Phylogeny | Chitinases - genetics | Cellulase - metabolism | Antifungal Agents - metabolism | RNA, Ribosomal, 16S - isolation & purification | Camellia sinensis - microbiology | Plant Roots - growth & development | Alphaproteobacteria - isolation & purification | Antifungal Agents - pharmacology | RNA, Ribosomal, 16S - metabolism | Fungi - drug effects | Indoleacetic Acids - metabolism | Ammonia - metabolism | Siderophores - metabolism | Soil Microbiology | Alphaproteobacteria - metabolism | Bacterial Proteins - genetics | Genotype | Plant Roots - microbiology | Siderophores - pharmacology | India | Alphaproteobacteria - classification | DNA, Fungal - metabolism | Bacterial Proteins - metabolism | Carbon-Carbon Lyases - metabolism | Glycoside Hydrolases - metabolism | Calcium Phosphates - metabolism | Host-bacteria relationships | Botanical research | Bacteria | Tea (Plant) | Usage | Growth | Phosphates | Chitinase | Fungicides | Laboratories | Ribosomal DNA | Solubilization | Promotion | Consortia | Fungi | Inoculation | Microorganisms | Fusarium | Life sciences | Deoxyribonucleic acid--DNA | Cultivars | Pathogens | Fusarium oxysporum | Cultivation | Crops | Genetic diversity | Glomerella cingulata | Polymerase chain reaction | Tea | Ammonia | Plant growth | Genotyping | Cellulase | Crop diseases | Index Medicus | Deoxyribonucleic acid | DNA
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