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1. Full Text The evolution of lncRNA repertoires and expression patterns in tetrapods
by Necsulea, Anamaria and Soumillon, Magali and Warnefors, Maria and Liechti, Angélica and Daish, Tasman and Zeller, Ulrich and Baker, Julie C and Grützner, Frank and Kaessmann, Henrik
Nature, ISSN 0028-0836, 2014, Volume 505, Issue 7485, pp. 635 - 640
Only a very small fraction of long noncoding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into their... 
SEQ REVEALS | X-CHROMOSOME | HUMAN GENOME | LONG NONCODING RNAS | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | NETWORKS | PLURIPOTENCY | DIFFERENTIATION | IDENTIFICATION | VERTEBRATE | Conserved Sequence - genetics | Multigene Family | Genomics | Humans | Transcriptome | Gene Expression Regulation, Developmental - genetics | RNA Precursors - genetics | RNA, Long Noncoding - genetics | Proteins - genetics | Primates - genetics | Animals | Chickens - genetics | Anura - genetics | Mice | MicroRNAs - genetics | Evolution, Molecular | Proteins | Phylogenetics | Genomes | Placenta | Genes | Age
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2. Full Text First report on chicken genes and chromosomes 2000
by Schmid, M and Nanda, I and Guttenbach, M and Steinlein, C and Hoehn, M and Schartl, M and Haaf, T and Weigend, S and Fries, R and Buerstedde, J-M and Wimmers, K and Burt, D.W and Smith, J and A’Hara, S and Law, A and Griffin, D.K and Bumstead, N and Kaufman, J and Thomson, P.A and Burke, T and Groenen, M .A.M and Crooijmans, R.P.M.A and Vignal, A and Fillon, V and Morisson, M and Pitel, F and Tixier-Boichard, M and Ladjali-Mohammedi, K and Hillel, J and Mäki-Tanila, A and Cheng, H.H and Delany, M.E and Burnside, J and Mizuno, S
Cytogenetic and Genome Research, ISSN 1424-8581, 2000, Volume 90, Issue 3-4, pp. 169 - 218
    
Paper | GALLUS-GALLUS-DOMESTICUS | LINKAGE MAP | RADIATION HYBRID MAP | EVOLUTIONARY CONSERVATION | GENETICS & HEREDITY | IN-SITU HYBRIDIZATION | DROSOPHILA HOMEOTIC GENES | BULKED SEGREGANT ANALYSIS | MOLECULAR-CLONING | MAJOR HISTOCOMPATIBILITY COMPLEX | EXPRESSED SEQUENCE TAGS | CELL BIOLOGY | Physical Chromosome Mapping | Humans | Genes - genetics | Longevity | Databases as Topic | Animals | Chromosomes - genetics | Recombination, Genetic | Base Sequence | Cloning, Molecular | Polymorphism, Single Nucleotide - genetics | Chickens - genetics | Genome | Evolution, Molecular | Telomere - genetics
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3. Full Text The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
by Nuno L. Barbosa-Morais and Manuel Irimia and Qun Pan and Hui Y. Xiong and Serge Gueroussov and Leo J. Lee and Valentina Slobodeniuc and Claudia Kutter and Stephen Watt and Recep Çolak and TaeHyung Kim and Christine M. Misquitta-Ali and Michael D. Wilson and Philip M. Kim and Duncan T. Odom and Brendan J. Frey and Benjamin J. Blencowe
Science, ISSN 0036-8075, 12/2012, Volume 338, Issue 6114, pp. 1587 - 1593
How species with similar repertoires of protein-coding genes differ so markedly at the phenotypic level is poorly understood. By comparing organ transcriptomes... 
Statistical significance | Vertebrates | Alternative splicing | Splicing | Reverse transcriptase polymerase chain reaction | Exons | Proportions | RESEARCH ARTICLES | Humans | Chickens | Evolution | EXON | EVENTS | GENOMES | MULTIDISCIPLINARY SCIENCES | MOUSE | GENE-EXPRESSION | BIRTH | Mice - genetics | RNA Splice Sites | Alternative Splicing | Species Specificity | Vertebrates - genetics | Introns | Xenopus - genetics | Transcriptome | Lizards - genetics | Regulatory Sequences, Ribonucleic Acid | Platypus - genetics | Biological Evolution | Opossums - genetics | Phenotype | Primates - genetics | Animals | Mice, Inbred C57BL - genetics | Chickens - genetics | Evolution, Molecular | Genetic engineering | Genetic aspects | Research | Genotype & phenotype | Evolutionary biology | RNA-protein interactions | Gene expression
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4. Full Text The genome of the green anole lizard and a comparative analysis with birds and mammals
by Alföldi, Jessica and Di Palma, Federica and Grabherr, Manfred and Williams, Christina and Kong, Lesheng and Mauceli, Evan and Russell, Pamela and Lowe, Craig B and Glor, Richard E and Jaffe, Jacob D and Ray, David A and Boissinot, Stephane and Shedlock, Andrew M and Botka, Christopher and Castoe, Todd A and Colbourne, John K and Fujita, Matthew K and Moreno, Ricardo Godinez and Ten Hallers, Boudewijn F and Haussler, David and Heger, Andreas and Heiman, David and Janes, Daniel E and Johnson, Jeremy and De Jong, Pieter J and Koriabine, Maxim Y and Lara, Marcia and Novick, Peter A and Organ, Chris L and Peach, Sally E and Poe, Steven and Pollock, David D and De Queiroz, Kevin and Sanger, Thomas and Searle, Steve and Smith, Jeremy D and Smith, Zachary and Swofford, Ross and Turner-Maier, Jason and Wade, Juli and Young, Sarah and Zadissa, Amonida and Edwards, Scott V and Glenn, Travis C and Schneider, Christopher J and Losos, Jonathan B and Lander, Eric S and Breen, Matthew and Ponting, Chris P and Lindblad-Toh, Kerstin and Medicinska fakulteten and Science for Life Laboratory, SciLifeLab and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Uppsala universitet
Nature, ISSN 0028-0836, 09/2011, Volume 477, Issue 7366, pp. 587 - 591
The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to... 
MULTIDISCIPLINARY SCIENCES | EVOLUTION | CHICKEN | Mammals - genetics | Synteny - genetics | Genomics | Humans | Genome - genetics | Lizards - genetics | Molecular Sequence Data | Phylogeny | Animals | GC Rich Sequence - genetics | Chickens - genetics | Birds - genetics | X Chromosome - genetics | Evolution, Molecular | Birds | Evolution | Genomes | Artificial chromosomes | Reptiles & amphibians | Evolution & development | Mass spectrometry | Biological Sciences | Evolutionsbiologi | Naturvetenskap | Natural Sciences | Evolutionary Biology | Biologiska vetenskaper
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5. Full Text Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
by Hillier, L.W and Miller, W and Birney, E and Groenen, M.A.M and Crooijmans, R.P.M.A and Aerts, J and Poel, van der, J.J and International Chicken Genome Sequencing Consortium and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Evolutionsbiologi and Institutionen för evolution, genomik och systematik and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet
Nature, ISSN 0028-0836, 2004, Volume 432, Issue 7018, pp. 695 - 716
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first... 
MOUSE GENOME | NON-LTR RETROTRANSPOSONS | ALCOHOL-DEHYDROGENASE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | BROWN-NORWAY RAT | RECENT SEGMENTAL DUPLICATIONS | MAJOR HISTOCOMPATIBILITY COMPLEX | TISSUE-SPECIFIC GENES | OLFACTORY RECEPTOR | MAMMALIAN EVOLUTION | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Vertebrates - genetics | Physical Chromosome Mapping | Genomics | Humans | Long Interspersed Nucleotide Elements - genetics | Mutagenesis - genetics | Synteny | Genes - genetics | Short Interspersed Nucleotide Elements - genetics | RNA, Untranslated - genetics | Sequence Analysis, DNA | Pseudogenes - genetics | Animals | Retroviridae - genetics | DNA Transposable Elements - genetics | Chickens - genetics | Genome | Avian Proteins - genetics | Evolution, Molecular | Birds | Evolution | Genetic diversity | Gene expression | Mammals | Chromosomes | Research Support; U.S. Gov't; P.H.S | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Long Interspersed Nucleotide Elements/genetics | Biology | Avian Proteins/genetics | Vertebrates/genetics | Short Interspersed Nucleotide Elements/genetics | Pseudogenes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Biological Sciences | RNA; Untranslated/genetics | Mutagenesis/genetics | DNA Transposable Elements/genetics | Multigene Family/genetics | Retroviridae/genetics | Sequence Analysis; DNA | Genetik | Genes/genetics | Naturvetenskap | Conserved Sequence/genetics | Evolution; Molecular | Biologiska vetenskaper | Cell and molecular biology | Chickens/genetics | Cell- och molekylärbiologi | phylogenetic analysis | mammalian evolution | tissue-specific genes | brown-norway rat | non-ltr retrotransposons | major histocompatibility complex | olfactory receptor | mouse genome | recent segmental duplications | alcohol-dehydrogenase
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6. Full Text The Genome of the Western Clawed Frog Xenopus tropicalis
by Uffe Hellsten and Richard M. Harland and Michael J. Gilchrist and David Hendrix and Jerzy Jurka and Vladimir Kapitonov and Ivan Ovcharenko and Nicholas H. Putnam and Shengqiang Shu and Leila Taher and Ira L. Blitz and Bruce Blumberg and Darwin S. Dichmann and Inna Dubchak and Enrique Amaya and John C. Detter and Russell Fletcher and Daniela S. Gerhard and David Goodstein and Tina Graves and Igor V. Grigoriev and Jane Grimwood and Takeshi Kawashima and Erika Lindquist and Susan M. Lucas and Paul E. Mead and Therese Mitras and Hajime Ogino and Yuko Ohta and Alexander V. Poliakov and Nicolas Pollet and Jacques Robert and Asaf Salamov and Amy K. Sater and Jeremy Schmutz and Astrid Terry and Peter D. Vize and Wesley C. Warren and Dan Wells and Andrea Wills and Richard K. Wilson and Lyle B. Zimmerman and Aaron M. Zorn and Robert Grainger and Timothy Grammer and Mustafa K. Khokha and Paul M. Richardson and Daniel S. Rokhsar and Joint Genome Institute (JGI)
Science, ISSN 0036-8075, 4/2010, Volume 328, Issue 5978, pp. 633 - 636
The western clawed frog Xenopus tropicalis is an important model for vertebrate development that combines experimental advantages of the African clawed frog... 
Frogs | Vertebrates | Chickens | Genes | REPORTS | Synteny | Birds | Genomes | Mammals | Chromosomes | Scaffolds | IMMUNE-SYSTEM | GENE | MULTIDISCIPLINARY SCIENCES | SEQUENCE | IGD | TRANSPOSABLE ELEMENTS | MOLECULAR PALEONTOLOGY | Gene Duplication | Vertebrates - genetics | Xenopus Proteins - genetics | Xenopus - genetics | Humans | Computational Biology | Embryo, Nonmammalian - metabolism | Chromosome Mapping | Phylogeny | Sequence Analysis, DNA | Xenopus - embryology | DNA Transposable Elements | Animals | Chromosomes - genetics | Conserved Sequence | Chickens - genetics | Genome | DNA, Complementary | Evolution, Molecular | Expressed Sequence Tags | Transposons | Genomics | Genetic aspects | Research | Nucleotide sequencing | Identification and classification | Methods | Biological diversity | Human | Genetics | Assembly
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7. Full Text Growth, efficiency, and yield of commercial broilers from 1957, 1978, and 2005
by Zuidhof, MJ and Schneider, BL and Carney, VL and Korver, DR and Robinson, FE
POULTRY SCIENCE, ISSN 0032-5791, 12/2014, Volume 93, Issue 12, pp. 2970 - 2982
The effect of commercial selection on the growth, efficiency, and yield of broilers was studied using 2 University of Alberta Meat Control strains unselected... 
efficiency | ENERGY | LIVABILITY | AGRICULTURE, DAIRY & ANIMAL SCIENCE | CARCASS COMPOSITION | FEED CONVERSION | PARAMETERS | yield dynamics | METABOLISM | MEAT-TYPE CHICKENS | broiler | POULTRY | BREEDER HENS | genetic change | DIETS | Eating | Animals | Chickens - growth & development | Breeding | Body Composition - genetics | Selection, Genetic | Weight Gain - genetics | Chickens - genetics | Female | Male | Adipose Tissue | Body Composition - physiology
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8. Full Text Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2
by Hansen, Scott B and Tao, Xiao and MacKinnon, Roderick and BROOKHAVEN NATIONAL LABORATORY (BNL)
Nature, ISSN 0028-0836, 09/2011, Volume 477, Issue 7365, pp. 495 - 498
The regulation of ion channel activity by specific lipid molecules is widely recognized as an integral component of electrical signalling in cells(1,2). In... 
PROTEINS | POTASSIUM CHANNELS | MULTIDISCIPLINARY SCIENCES | Molecular Sequence Data | Substrate Specificity | Crystallography, X-Ray | Cytoplasm - metabolism | Potassium Channels, Inwardly Rectifying - chemistry | Protein Subunits - metabolism | Phosphatidylinositol 4,5-Diphosphate - metabolism | Conserved Sequence | Chickens - genetics | Cell Membrane - metabolism | Binding Sites | Phosphatidylinositol 4,5-Diphosphate - chemistry | Membrane Potentials - drug effects | Amino Acid Sequence | Models, Molecular | Potassium Channels, Inwardly Rectifying - genetics | Phosphatidic Acids - pharmacology | Patch-Clamp Techniques | Animals | Phosphatidylinositol 4,5-Diphosphate - pharmacology | Phosphatidic Acids - metabolism | Protein Subunits - chemistry | Potassium Channels, Inwardly Rectifying - metabolism | Ion Channel Gating - drug effects | Protein Structure, Tertiary - drug effects
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9. Full Text The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
by Wang, Zhuo and Pascual-Anaya, Juan and Zadissa, Amonida and Li, Wenqi and Niimura, Yoshihito and Huang, Zhiyong and Li, Chunyi and White, Simon and Xiong, Zhiqiang and Fang, Dongming and Wang, Bo and Ming, Yao and Chen, Yan and Zheng, Yuan and Kuraku, Shigehiro and Pignatelli, Miguel and Herrero, Javier and Beal, Kathryn and Nozawa, Masafumi and Li, Qiye and Wang, Juan and Zhang, Hongyan and Yu, Lili and Shigenobu, Shuji and Wang, Junyi and Liu, Jiannan and Flicek, Paul and Searle, Steve and Weng, Jun and Kuratani, Shigeru and Yin, Ye and Aken, Bronwen and Zhang, Guojie and Irie, Naoki
Nature Genetics, ISSN 1061-4036, 06/2013, Volume 45, Issue 6, pp. 701 - 706
The unique anatomical features of turtles have raised unanswered questions about the origin of their unique body plan. We generated and analyzed draft genomes... 
CARAPACIAL RIDGE | PHYLOTYPIC STAGE | MAXIMUM-LIKELIHOOD | TRANSCRIPTOME | RNA-SEQ | GENES | GENETICS & HEREDITY | DIVERGENCE TIMES | MULTIPLE SEQUENCE ALIGNMENT | MOLECULAR CLOCK | SISTER GROUP | Reptilian Proteins - genetics | Molecular Sequence Annotation | Embryonic Development - genetics | Transcriptome | Molecular Sequence Data | MicroRNAs - metabolism | Turtles - embryology | Phylogeny | Wnt Proteins - metabolism | Chick Embryo | Sequence Analysis, DNA | Turtles - genetics | Animal Shells - metabolism | Animals | Wnt Proteins - genetics | Gene Expression Regulation, Developmental | Receptors, Odorant - genetics | Chickens - genetics | MicroRNAs - genetics | Genome | Body Patterning - genetics | Evolution, Molecular | Reptilian Proteins - metabolism | Genomics | Analysis | Physiological aspects | Genetic aspects | Research | Gene expression | Green turtle | Phylogenetics | Genetics | Evolution | Software | Genomes | Methods | Index Medicus
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