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1. Full Text Clocks in the Green Lineage: Comparative Functional Analysis of the Circadian Architecture of the Picoeukaryote Ostreococcus
by Florence Corellou and Christian Schwartz and Jean-Paul Motta and El Batoul Djouani-Tahri and Frédéric Sanchez and François-Yves Bouget
The Plant Cell, ISSN 1040-4651, 11/2009, Volume 21, Issue 11, pp. 3436 - 3449
Biological rhythms that allow organisms to adapt to the solar cycle are generated by endogenous circadian clocks. In higher plants, many clock components have... 
Genetic vectors | Gels | Genes | DNA | Luminescence | Gene expression regulation | Genomes | Plants | Circadian rhythm | Plant cells | ARABIDOPSIS-THALIANA | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | COMPONENTS | CCA1 | PLANT SCIENCES | CELL BIOLOGY | CELL-DIVISION | RHYTHMS | PSEUDO-RESPONSE REGULATORS | MOLECULAR-BASES | EXPRESSION | GENE-TRANSCRIPTION | Protein Binding - genetics | Light-Harvesting Protein Complexes - genetics | Species Specificity | Light-Harvesting Protein Complexes - metabolism | Molecular Sequence Data | CLOCK Proteins - genetics | Phylogeny | Chlorophyta - metabolism | Promoter Regions, Genetic - genetics | Arabidopsis Proteins - metabolism | CLOCK Proteins - metabolism | Chlorophyta - genetics | Chlorophyta - radiation effects | Light | Photosystem II Protein Complex - genetics | Arabidopsis Proteins - genetics | Genome, Plant - genetics | Circadian Rhythm - genetics | Gene Expression Regulation, Plant - genetics | Transcription Factors - genetics | Photosystem II Protein Complex - metabolism | Transcription Factors - metabolism | Models, Biological | Transcription, Genetic - genetics | Photic Stimulation | Evolution, Molecular | Circadian rhythms | Usage | DNA microarrays | Physiological aspects | Genetic aspects | Research | Gene expression | Prasinophytes
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2. Full Text Genome-wide analysis reveals the evolution and structural features of WRINKLED1 in plants
by Tang, Tong and Tang, Tong and Du, Chang and Du, Chang and Song, Huan and Song, Huan and Aziz, Usman and Aziz, Usman and Wang, Lili and Wang, Lili and Zhao, Cuizhu and Zhao, Cuizhu and Zhang, Meng and Zhang, Meng
Molecular Genetics and Genomics, ISSN 1617-4615, 4/2019, Volume 294, Issue 2, pp. 329 - 341
WRINKLED1 (WRI1), an AP2/ERE transcription factor, is one of the most important regulators of oil accumulation. It has been extensively studied in angiosperms,... 
Life Sciences | Human Genetics | Biochemistry, general | Transactivation domain | Plant Genetics and Genomics | Microbial Genetics and Genomics | WRINKLED1 | IDR-PEST | VYL | Origination | Animal Genetics and Genomics | ACTIVATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEED DEVELOPMENT | FATTY-ACID BIOSYNTHESIS | GENE | PHYTOCHROME-A | SEQUENCE | GENETICS & HEREDITY | ARABIDOPSIS | ACCUMULATION | TRANSCRIPTION FACTOR | OIL BIOSYNTHESIS | Arabidopsis Proteins - genetics | Genome, Plant - genetics | Seeds - genetics | Exons - genetics | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Regulatory Sequences, Nucleic Acid - genetics | Arabidopsis - genetics | Chlorophyta - genetics | Sequence Alignment | Fatty Acids - genetics | Tobacco - genetics | Gene Expression Regulation, Plant | Protein Domains | 14-3-3 Proteins - genetics | 14-3-3 protein | Phosphorylation | Evolution | Genomes | Acidity | Flowers & plants | Plants | Phylogeny | Alkalinity | Angiosperms | Deoxyribonucleic acid--DNA
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3. Full Text Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
by Alexandra Z. Worden and Jae-Hyeok Lee and Thomas Mock and Pierre Rouzé and Melinda P. Simmons and Andrea L. Aerts and Andrew E. Allen and Marie L. Cuvelier and Evelyne Derelle and Meredith V. Everett and Elodie Foulon and Jane Grimwood and Heidrun Gundlach and Bernard Henrissat and Carolyn Napoli and Sarah M. McDonald and Micaela S. Parker and Stephane Rombauts and Aasf Salamov and Peter Von Dassow and Jonathan H. Badger and Pedro M. Coutinho and Elif Demir and Inna Dubchak and Chelle Gentemann and Wenche Eikrem and Jill E. Gready and Uwe John and William Lanier and Erika A. Lindquist and Susan Lucas and Klaus F. X. Mayer and Herve Moreau and Fabrice Not and Robert Otillar and Olivier Panaud and Jasmyn Pangilinan and Ian Paulsen and Benoit Piegu and Aaron Poliakov and Steven Robbens and Jeremy Schmutz and Eve Toulza and Tania Wyss and Alexander Zelensky and Kemin Zhou and E. Virginia Armbrust and Debashish Bhattacharya and Ursula W. Goodenough and Yves Van de Peer and Igor V. Grigoriev and Joint Genome Institute (JGI)
Science, ISSN 0036-8075, 4/2009, Volume 324, Issue 5924, pp. 268 - 272
Picoeukaryotes are a taxonomically diverse group of organisms less than 2 micrometers in diameter. Photosynthetic marine picoeukaryotes in the genus Micromonas... 
Metagenomics | Oceans | Introns | Divergent evolution | Genes | Algae | Evolution | Reports | Genomes | Plants | Eukaryotic cells | LAND PLANTS | ORIGIN | ENDOSYMBIOSIS | PERSPECTIVE | METABOLISM | MULTIDISCIPLINARY SCIENCES | ALGAE | GENE-EXPRESSION | RIBOSWITCHES | PROVIDES | CHLAMYDOMONAS | Adaptation, Physiological | Phytoplankton - genetics | Chlorophyta - physiology | Molecular Sequence Data | Phylogeny | Phytoplankton - classification | Genetic Variation | Chlorophyta - genetics | Photosynthesis - genetics | Plants - genetics | Ecosystem | Chlorophyta - classification | Oceans and Seas | Chlorophyta - cytology | RNA, Untranslated | Gene Expression Regulation | Transcription Factors - genetics | Sequence Analysis, DNA | DNA Transposable Elements | Biological Evolution | Meiosis - genetics | Repetitive Sequences, Nucleic Acid | Genome | Molecular evolution | Green algae | Research | Identification and classification | Natural history | Climate change | Marine biology | Evolutionary biology | Environmental monitoring | Genomics | Populations and Evolution | Cellular Biology | Biodiversity | Life Sciences | Computer Science | Phytoplankton | Genetics | Biomolecules | Vegetal Biology | Bioinformatics | Plants genetics | Quantitative Methods | Biochemistry, Molecular Biology | Meiosis | Systematics, Phylogenetics and taxonomy | Plant breeding | Chlorophyta | Transcription Factors | Photosynthesis | Molecular Networks | Molecular biology
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4. Full Text Using population genetic theory and DNA sequences for species detection and identification in asexual organisms
by Birky Jr, C. William and Adams, Joshua and Gemmel, Marlea and Perry, Julia
PLoS ONE, ISSN 1932-6203, 2010, Volume 5, Issue 5, p. e10609
Background: It is widely agreed that species are fundamental units of biology, but there is little agreement on a definition of species or on an operational... 
DELIMITATION | DIVERSIFICATION | BDELLOID ROTIFERS | SPECIATION | BARCODES | MULTIDISCIPLINARY SCIENCES | DIVERSITY | SSU RDNA | MODEL | Genetics, Population | Rotifera - genetics | Species Specificity | Heterotrophic Processes - genetics | Phylogeny | Fungi - genetics | Chlorophyta - genetics | Reproduction, Asexual - genetics | Animals | Oligochaeta - genetics | Mites - genetics | Base Sequence | Genetic Speciation | Population Dynamics | Genetic research | Nucleotide sequencing | Analysis | DNA | DNA sequencing | Nucleotide sequence | Ecosystems | Genes | Biological evolution | Evolutionary genetics | Identification | Ecology | Organisms | Biodiversity | Population genetics | Ecosystem biology | Gene sequencing | Biological diversity | Fungi | Species diversity | Eukaryotes | Evolutionary biology | Phylogenetics | Genetics | Evolution | Invertebrates | Speciation | Deoxyribonucleic acid--DNA | Data processing | Models | Sampling | Deoxyribonucleic acid
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5. Full Text Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree
by Cavalier-Smith, Thomas
Biology Letters, ISSN 1744-9561, 06/2010, Volume 6, Issue 3, pp. 342 - 345
I discuss eukaryotic deep phylogeny and reclassify the basal eukaryotic kingdom Protozoa and derived kingdom Chromista in the light of multigene trees. I... 
Cytochrome c-type biogenesis | Rhizaria | Double secondary symbiogenesis | Euglenozoa | ORC evolution | Tom40 | TRYPANOSOMA-BRUCEI | PROTEIN | double secondary symbiogenesis | cytochrome c-type biogenesis | EVOLUTIONARY BIOLOGY | ORIGIN | EVOLUTION | ENDOSYMBIOSIS | BIOLOGY | ECOLOGY | Eukaryota - classification | Cytoskeleton - genetics | Cytochromes c - genetics | Phylogeny | Rhizaria - genetics | Rhodophyta - genetics | Chlorophyll - genetics | Cytochromes c1 - genetics | Alveolata - genetics | Chlorophyta - genetics | DNA, Mitochondrial - genetics | Eukaryota - genetics | Euglenozoa - genetics | DNA, Protozoan - genetics | Evolution, Molecular | 1001 | 183 | Evolutionary Biology
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6. Full Text Algal ancestor of land plants was preadapted for symbiosis
by Pierre-Marc Delaux and Guru V. Radhakrishnan and Dhileepkumar Jayaraman and Jitender Cheema and Mathilde Malbreil and Jeremy D. Volkening and Hiroyuki Sekimoto and Tomoaki Nishiyama and Michael Melkonian and Lisa Pokorny and Carl J. Rothfels and Heike Winter Sederoff and Dennis W. Stevenson and Barbara Surek and Yong Zhang and Michael R. Sussman and Christophe Dunand and Richard J. Morris and Christophe Roux and Gane Ka-Shu Wong and Giles E. D. Oldroyd and Jean-Michel Ané
Proceedings of the National Academy of Sciences, ISSN 0027-8424, 10/2015, Volume 112, Issue 43, pp. 13390 - 13395
Colonization of land by plants was a major transition on Earth, but the developmental and genetic innovations required for this transition remain unknown.... 
plant-microbe interactions | FUNGAL SYMBIOSES | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | algae | DEPENDENT PROTEIN-KINASE | COLONIZATION | plant evolution | LOTUS-JAPONICUS | EVOLUTION | ARBUSCULAR MYCORRHIZAL SYMBIOSIS | MEDICAGO-TRUNCATULA | symbiosis | CALCIUM | phylogeny | KEY | Spirogyra - growth & development | Closterium - genetics | Adaptation, Biological - genetics | Chlorophyta - physiology | Symbiosis - physiology | Molecular Sequence Data | Hepatophyta - genetics | DNA Primers - genetics | Embryophyta - physiology | Mycorrhizae - physiology | Medicago truncatula - microbiology | Phylogeny | Symbiosis - genetics | Chlorophyta - genetics | Likelihood Functions | Base Sequence | Fungi - physiology | Hepatophyta - growth & development | Embryophyta - genetics | RNA, Plant - genetics | Plant Roots - microbiology | Reverse Transcriptase Polymerase Chain Reaction | Adaptation, Biological - physiology | Biological Evolution | Plant Proteins - genetics | Sequence Analysis, RNA | Spirogyra - genetics | Models, Genetic | Closterium - growth & development | Symbiosis | Research | Plants | Adaptation (Biology) | Natural history | Biological Sciences | plant–microbe interactions
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7. Full Text Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains
by Kong, Fantao and Yamasaki, Tomohito and Kurniasih, Sari Dewi and Hou, Liyuan and Li, Xiaobo and Ivanova, Nina and Okada, Shigeru and Ohama, Takeshi
Journal of Bioscience and Bioengineering, ISSN 1389-1723, 09/2015, Volume 120, Issue 3, pp. 239 - 245
is a very attractive candidate plant cell factory. However, its main drawback is the difficulty to find the transformants that robustly express heterologous... 
Position effect | Squalene synthase-like gene | Botryococcus braunii | Transgene silencing | Methyltransferase gene | TRANSFORMATION | MUTAGENESIS | DNA METHYLATION | FOOD SCIENCE & TECHNOLOGY | REINHARDTII | MECHANISMS | IDENTIFICATION | POLYPROTEIN | TRANSGENES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PROTEINS | TOOL | Transformation, Genetic | Amino Acid Sequence | Foot-and-Mouth Disease Virus - genetics | Gene Expression | Farnesyl-Diphosphate Farnesyltransferase - genetics | Transgenes - genetics | DNA, Complementary - genetics | Gene Silencing | Methyltransferases - genetics | Molecular Sequence Data | Drug Resistance, Microbial - genetics | Mutation - genetics | Open Reading Frames - genetics | Blotting, Western | Chlorophyta - genetics | Chlamydomonas reinhardtii - genetics | Genetic Markers - genetics | Chlamydomonas reinhardtii - metabolism | Codon - genetics | Analysis | Genes | Transferases | Genomics | Genetic research | Genetic engineering | Foot-and-mouth disease | Drug resistance in microorganisms | Anopheles | Codon | Resveratrol | Genetic transcription
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8. Full Text Bioinformatics Reveal Five Lineages of Oleosins and the Mechanism of Lineage Evolution Related to Structure/Function from Green Algae to Seed Plants
by Ming-Der Huang and Anthony H.C. Huang
Plant Physiology, ISSN 0032-0889, 9/2015, Volume 169, Issue 1, pp. 453 - 470
Plant cells contain subcellular lipid droplets with a triacylglycerol matrix enclosed by a layer of phospholipids and the small structural protein oleosin.... 
Proteins | Seeds | Introns | Genes | Green algae | Evolution | Lipids | Genomes | Biology | Plants | BIOCHEMISTRY AND METABOLISM | ARABIDOPSIS-THALIANA | SEQUENCES | TAPETUM | HYDROPHOBIC DOMAIN | POLLEN | OIL BODIES | ENDOPLASMIC-RETICULUM | MAIZE | LIPID DROPLET PROTEIN | RAPID EVOLUTION | PLANT SCIENCES | Molecular Weight | Genes, Plant | Magnoliopsida - genetics | Persea - genetics | Phylogeny | RNA, Messenger - metabolism | Amino Acids - metabolism | Chlorophyta - genetics | Haploidy | Diploidy | Pseudogenes - genetics | Plants - genetics | Gene Expression Regulation, Plant | Conserved Sequence | Plant Proteins - metabolism | Fruit - genetics | Amino Acid Sequence | Computational Biology - methods | Introns - genetics | Seeds - metabolism | Bryophyta - genetics | RNA, Messenger - genetics | Open Reading Frames - genetics | Amino Acid Motifs | Plant Proteins - genetics | Ferns - genetics | Evolution, Molecular | Botanical research | Plant genetics | Avocado | Physiological aspects | Research | Methods | Computational biology
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9. Full Text Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes
by Maier, Uwe-G and Zauner, Stefan and Woehle, Christian and Bolte, Kathrin and Hempel, Franziska and Allen, John F and Martin, William F
Genome Biology and Evolution, ISSN 1759-6653, 2013, Volume 5, Issue 12, pp. 2318 - 2329
Plastid and mitochondrial genomes have undergone parallel evolution to encode the same functional set of genes. These encode conserved protein components of... 
Evolution | Mitochondria | Organelle genomes | Gene transfer | Ribosomal proteins | Plastids | gene transfer | DNA TRANSFER | ORGANELLES | mitochondria | plastids | organelle genomes | S SUBUNIT | CHLOROPLAST | EUKARYOTES | evolution | COMPLETE NUCLEOTIDE-SEQUENCE | ribosomal proteins | ORGANIZATION | EVOLUTIONARY BIOLOGY | NUCLEUS | GENETICS & HEREDITY | PARASITIC PLANT | PHOTOSYNTHESIS | Cyanobacteria - genetics | Membrane Proteins - genetics | Ribosomal Proteins - genetics | Cell Membrane - genetics | Electron Transport Chain Complex Proteins - genetics | Biological Evolution | Chlorophyta - genetics | Mitochondria - genetics | Photosynthesis - genetics | Ribosomes - genetics | Plastids - genetics | Eukaryotic Cells - cytology | Respiration - genetics | Genome, Mitochondrial | Energy Metabolism - genetics | Chloroplasts - genetics | Evolution, Molecular
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10. Full Text Stable transformation and reverse genetic analysis of Penium margaritaceum: a platform for studies of charophyte green algae, the immediate ancestors of land plants
by Sørensen, Iben and Fei, Zhangjun and Andreas, Amanda and Willats, William G. T and Domozych, David S and Rose, Jocelyn K. C
The Plant Journal, ISSN 0960-7412, 02/2014, Volume 77, Issue 3, pp. 339 - 351
Summary The charophyte green algae (CGA, Streptophyta, Viridiplantae) occupy a key phylogenetic position as the immediate ancestors of land plants but,... 
Penium margaritaceum | green algae | cellulose | technical advance | pectin | charophyte | plant cell wall | plant evolution | STRIGOSUM-LITTORALE COMPLEX | CELLULOSE SYNTHASE | AGROBACTERIUM-MEDIATED TRANSFORMATION | PLANT SCIENCES | ARTIFICIAL MICRORNAS | GENOME REVEALS | ORIGIN | CHLAMYDOMONAS-REINHARDTII | DNA | ARABIDOPSIS | EARLY EVOLUTION | Desmidiales - genetics | Desmidiales - ultrastructure | Phylogeny | Chlorophyta - metabolism | Chlorophyta - genetics | Glucosyltransferases - metabolism | RNA Interference | Gene Expression Regulation, Plant | Carboxylic Ester Hydrolases - genetics | Plant Proteins - metabolism | Transgenes | Genes, Reporter | Glucosyltransferases - genetics | Transformation, Genetic | Desmidiales - metabolism | Gene Targeting | Reverse Genetics | Gene Library | Embryophyta - genetics | Protein Transport | Biological Evolution | Plant Proteins - genetics | Phenotype | Cell Wall - metabolism | Charophyceae - genetics | Agrobacterium - genetics | Carboxylic Ester Hydrolases - metabolism | RNA | Genomics | Cellulose | Genetic research | Evolution | Genetic aspects | Pectin | Plants | Cells | Phylogenetics | Genetics | Terrestrial ecosystems | Flowers & plants | Algae
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11. Full Text Mechanism for DNA transposons to generate introns on genomic scales
by Huff, Jason T and Zilberman, Daniel and Roy, Scott W
Nature, ISSN 0028-0836, 2016, Volume 538, Issue 7626, pp. 533 - 536
The discovery of introns four decades ago was one of the most unexpected findings in molecular biology(1). Introns are sequences interrupting genes that must... 
ELEMENTS | ORIGIN | EVOLUTION | MICROMONAS | ALIGNMENT | MULTIDISCIPLINARY SCIENCES | SPLICEOSOMAL INTRONS | POPULATIONS | DUPLICATION | SEQUENCING DATA | DISCOVERY | Introns - genetics | RNA Splice Sites - genetics | Genomics | Genome - genetics | Exons - genetics | Nucleosomes - genetics | Regulatory Sequences, Nucleic Acid - genetics | Chlorophyta - genetics | Eukaryota - genetics | Recombination, Genetic | Base Sequence | DNA Transposable Elements - genetics | Codon - genetics | Stramenopiles - genetics | Evolution, Molecular | Physiological aspects | Transposons | Nucleotide sequencing | Introns | Methods | DNA sequencing | DNA methylation | Genomes | Genes | Deoxyribonucleic acid--DNA
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12. Full Text Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles
by Monnier, Annabelle and Liverani, Silvia and Bouvet, Régis and Jesson, Béline and Smith, Jim Q and Mosser, Jean and Corellou, Florence and Bouget, François-Yves
BMC Genomics, ISSN 1471-2164, 03/2010, Volume 11, Issue 1, pp. 192 - 192
Background: Picoeukaryotes represent an important, yet poorly characterized component of marine phytoplankton. The recent genome availability for two species... 
CIRCADIAN CLOCK | TAURI | PHAEODACTYLUM-TRICORNUTUM | PRASINOPHYCEAE | CHLAMYDOMONAS-REINHARDTII | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENE-EXPRESSION | DIVERSITY | ARABIDOPSIS | CELL | MICROARRAY DATA | Oligonucleotide Array Sequence Analysis | Gene Expression Regulation | Oxidative Stress - genetics | Gene Expression Profiling | Photoperiod | DNA Repair - genetics | Transcription Factors - genetics | Mitosis - genetics | Chlorophyta - metabolism | RNA, Algal - biosynthesis | Sequence Analysis, DNA | Chlorophyta - genetics | Analysis of Variance | DNA, Algal - genetics | Photosynthesis - genetics | Bayes Theorem | Lipid Metabolism - genetics | Transcription, Genetic | DNA, Algal - biosynthesis | Principal Component Analysis | Cluster Analysis | Physiological aspects | Green algae | Genetic aspects | Research | Genetic regulation | Photoperiodism | DNA, Algal | Oxidative Stress | Mitosis | Biochemistry, Molecular Biology | Genomics | Lipid Metabolism | RNA, Algal | Life Sciences | DNA Repair | Transcription Factors | Photosynthesis | Algae, Green
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13. Full Text Vertical and horizontal photobiont transmission within populations of a lichen symbiosis
by DAL GRANDE, F and WIDMER, I and WAGNER, H.H and SCHEIDEGGER, C
Molecular Ecology, ISSN 0962-1083, 07/2012, Volume 21, Issue 13, pp. 3159 - 3172
Lichens are widespread symbioses and play important roles in many terrestrial ecosystems. The genetic structure of lichens is the result of the association... 
population genetics | fungi | empirical | microsatellite | algae | Lobaria pulmonaria | ecological genetics | MOLECULAR EVIDENCE | XANTHORIA-PARIETINA | THALLUS DEVELOPMENT | BIOCHEMISTRY & MOLECULAR BIOLOGY | POPULUS-TREMULOIDES | LOBARIA-PULMONARIA | GENETIC-STRUCTURE | SEXUAL REPRODUCTION | EVOLUTIONARY BIOLOGY | EPIPHYTIC LICHEN | MICROSATELLITE MARKERS | ECOLOGY | FUNGAL ENDOPHYTES | Symbiosis | DNA, Fungal - genetics | Chlorophyta - physiology | Lichens - microbiology | Genotype | Gene Transfer, Horizontal | Fungi - genetics | Genetic Variation | Chlorophyta - genetics | Lichens - genetics | DNA, Algal - genetics | Fungi - physiology | Models, Genetic | Mutation | Microsatellite Repeats | Fungi | Lichens | Genetic markers | Algae
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