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1. Full Text Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)
by Thudi, Mahendar and Bohra, Abhishek and Nayak, Spurthi N and Varghese, Nicy and Shah, Trushar M and Penmetsa, R. Varma and Thirunavukkarasu, Nepolean and Gudipati, Srivani and Gaur, Pooran M and Kulwal, Pawan L and Upadhyaya, Hari D and KaviKishor, Polavarapu B and Winter, Peter and Kahl, Günter and Town, Christopher D and Kilian, Andrzej and Cook, Douglas R and Varshney, Rajeev K
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 11, p. e27275
Chickpea (Cicer arietinum L.) is the third most important cool season food legume, cultivated in arid and semi-arid regions of the world. The goal of this... 
LINKAGE MAP | INTEGRATION | MEDICAGO-TRUNCATULA | MULTIDISCIPLINARY SCIENCES | BARLEY | MICROSATELLITE MARKERS | TECHNOLOGY DART | CONSENSUS MAP | DIVERSITY ARRAYS | WILD RELATIVES | GENOME | Chromosomes, Artificial, Bacterial - genetics | Genetic Markers - genetics | Cicer - genetics | Polymorphism, Genetic - genetics | Chromosome Mapping | Genome, Plant | Chromosomes, Plant - genetics | Quantitative Trait Loci | DNA, Plant - genetics | Genetic Linkage | Microsatellite Repeats - genetics | Legumes | Beans | Arid regions | Genes | Genomics | Genomes | Mimosaceae | Plant pathology | Biological evolution | Grain cultivation | Evolutionary genetics | Mapping | Gene polymorphism | Bacterial artificial chromosomes | Gene sequencing | Genotype & phenotype | Evolution | Bacteria | Inbreeding | Population | Genotypes | Anchoring | Recombinant | Carbohydrates | Barley | Microsatellites | Semi arid areas | Cool season | Breeding | Cloning | Crops | Markers | Arid environments | Genetic diversity | Artificial chromosomes | Gene loci | Arrays | Gene mapping | Polymorphism | Semiarid lands
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2. Full Text Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
by Nayak, Spurthi N and Zhu, Hongyan and Varghese, Nicy and Datta, Subhojit and Choi, Hong-Kyu and Horres, Ralf and Jüngling, Ruth and Singh, Jagbir and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, Dave A and Kahl, Günter and Winter, Peter and Cook, Douglas R and Varshney, Rajeev K
Theoretical and Applied Genetics, ISSN 0040-5752, 5/2010, Volume 120, Issue 7, pp. 1415 - 1441
This study presents the development and mapping of simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers in chickpea. The mapping... 
Life Sciences | Biochemistry, general | Biotechnology | Plant Biochemistry | Plant Breeding/Biotechnology | Agriculture | Plant Genetics & Genomics | AGRONOMY | MODEL | IDENTIFICATION | RESISTANCE GENE | FUSARIUM-WILT | CROP | RETICULATUM | PLANT SCIENCES | HORTICULTURE | TAGGED MICROSATELLITE SITES | EVOLUTION | GENETICS & HEREDITY | CICER-ARIETINUM L | DISEASE RESISTANCE | Medicago truncatula - genetics | Gene Library | Genetic Loci - genetics | Molecular Sequence Data | Genotype | Chromosome Mapping | Genetic Markers | Phylogeny | Sequence Homology, Nucleic Acid | Microsatellite Repeats - genetics | Genes, Plant - genetics | Base Sequence | Cicer - genetics | Minisatellite Repeats - genetics | Polymorphism, Single Nucleotide - genetics | Expressed Sequence Tags | Genetic Linkage | Chromosome mapping | Plant breeding | Plant genetics | Physiological aspects | Chickpea | Genetic aspects | Research | Single nucleotide polymorphisms | Original Paper
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3. Full Text Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
by Gujaria, Neha and Kumar, Ashish and Dauthal, Preeti and Dubey, Anuja and Hiremath, Pavana and Bhanu Prakash, A and Farmer, Andrew and Bhide, Mangla and Shah, Trushar and Gaur, Pooran M and Upadhyaya, Hari D and Bhatia, Sabhyata and Cook, Douglas R and May, Greg D and Varshney, Rajeev K
Theoretical and Applied Genetics, ISSN 0040-5752, 5/2011, Volume 122, Issue 8, pp. 1577 - 1589
A transcript map has been constructed by the development and integration of genic molecular markers (GMMs) including single nucleotide polymorphism (SNP),... 
Life Sciences | Biochemistry, general | Biotechnology | Plant Biochemistry | Plant Breeding/Biotechnology | Agriculture | Plant Genetics & Genomics | LINKAGE MAP | AGRONOMY | INDEL ANALYSIS | BARLEY GENOME | GENETIC-MAP | SNP MARKERS | DISCOVERY | PLANT SCIENCES | HORTICULTURE | SSR MARKERS | MEDICAGO-TRUNCATULA | GENETICS & HEREDITY | MICROSATELLITE MARKERS | SINGLE-NUCLEOTIDE POLYMORPHISMS | Species Specificity | Molecular Sequence Data | Chromosome Mapping | DNA Primers - genetics | Sequence Analysis, DNA | India | Microsatellite Repeats - genetics | Genetic Variation | Haplotypes - genetics | Electrophoresis, Capillary | Sequence Alignment | Genes, Plant - genetics | Base Sequence | Genetic Markers - genetics | Cicer - genetics | Minisatellite Repeats - genetics | Polymorphism, Single Nucleotide - genetics | Expressed Sequence Tags | Genetic markers | Chromosome mapping | Usage | Physiological aspects | Chickpea | Genetic aspects | Research | Original Paper
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4. Full Text SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.)
by Leonforte, Antonio and Sudheesh, Shimna and Cogan, Noel O.I and Salisbury, Philip A and Nicolas, Marc E and Materne, Michael and Forster, John W and Kaur, Sukhjiwan
BMC Plant Biology, ISSN 1471-2229, 10/2013, Volume 13, Issue 1, p. 161
Background: Field pea (Pisum sativum L.) is a self-pollinating, diploid, cool-season food legume. Crop production is constrained by multiple biotic and abiotic... 
Comparative genomics | Grain legume | Genetic marker | Abiotic stress | Breeding | Trait dissection | LEGUME | CHICKPEA CICER-ARIETINUM | WHITE CLOVER | SALT TOLERANCE | GENETIC-MAP | PLANT SCIENCES | BEAN VICIA-FABA | QUANTITATIVE TRAIT LOCI | MEDICAGO-TRUNCATULA | DRAFT GENOME SEQUENCE | STRESS | Reproducibility of Results | Synteny - genetics | Genetic Association Studies | Genome, Plant - genetics | Peas - physiology | Genetic Markers | Genotyping Techniques | Salinity | Chromosome Mapping - methods | Polymorphism, Single Nucleotide - genetics | Recombination, Genetic - genetics | Salt-Tolerance - genetics | Peas - genetics | Crosses, Genetic | Genetic Linkage | Quantitative Trait Loci - genetics | Crop yields | Peas | Hardiness | Plant physiological ecology | Environmental aspects | Physiological aspects | Research | Plants | Quantitative genetics | Genetic markers | Genomics | Analysis | Genes | Genetic aspects | Single nucleotide polymorphisms | Glycine | Biotechnology industry | Research & development--R&D | Crops | Grain | Genomes | Genetic diversity | Studies | Boron | Germplasm | Diet | Cattle | Dissection | Wheat | Rice
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5. Full Text Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development
by Rohini Garg and Ravi K. Patel and Shalu Jhanwar and Pushp Priya and Annapurna Bhattacharjee and Gitanjali Yadav and Sabhyata Bhatia and Debasis Chattopadhyay and Akhilesh K. Tyagi and Mukesh Jain
Plant Physiology, ISSN 0032-0889, 8/2011, Volume 156, Issue 4, pp. 1661 - 1678
Chickpea (Cicer arietinum) is an important food legume crop but lags in the availability of genomic resources. In this study, we have generated about 2 million... 
Transcriptomes | Legumes | Soybeans | Databases | Tissue samples | Genome Analysis | Genes | Genomics | Chickpeas | Genomes | Plants | LINEAGE-SPECIFIC GENES | SSR MARKERS | STRESS-RESPONSIVE TRANSCRIPTOME | RNA-SEQ | GENOMES | DROUGHT STRESS | MICROSATELLITE MARKERS | IDENTIFICATION | CICER-ARIETINUM L | GLYCINE-MAX | PLANT SCIENCES | Conserved Sequence - genetics | Proteome - genetics | Reproducibility of Results | Temperature | Genetic Association Studies | Species Specificity | Molecular Sequence Annotation | RNA, Messenger - genetics | Transcriptome | Databases, Genetic | Transcription Factors - genetics | RNA, Messenger - metabolism | Microsatellite Repeats - genetics | Transcription Factors - metabolism | Organ Specificity - genetics | Reference Standards | Base Sequence | Cicer - genetics | Gene Expression Regulation, Plant | Software | Base Composition - genetics | Internet | High-Throughput Nucleotide Sequencing - methods | Chickpea | Genetic aspects | Research | Plant genetics
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6. Full Text Development and evaluation of high‐density Axiom®CicerSNP Array for high‐resolution genetic mapping and breeding applications in chickpea
by Roorkiwal, Manish and Jain, Ankit and Kale, Sandip M and Doddamani, Dadakhalandar and Chitikineni, Annapurna and Thudi, Mahendar and Varshney, Rajeev K
Plant Biotechnology Journal, ISSN 1467-7644, 04/2018, Volume 16, Issue 4, pp. 890 - 901
To accelerate genomics research and molecular breeding applications in chickpea, a high‐throughput SNP genotyping platform ‘Axiom ® Cicer SNP Array’ has been... 
SNP array | QTLs | drought | molecular breeding | chickpea | genotyping | IDENTIFICATION | DROUGHT TOLERANCE | PLANT SCIENCES | GENOMICS | CROPS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ASSAYS | DIVERSITY | WEIGHT | CICER-ARIETINUM L | COMPLEX TRAITS | MAP | Quantitative genetics | Genetic research | Genomics
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7. Full Text Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.)
by Thudi, Mahendar and Chitikineni, Annapurna and Liu, Xin and He, Weiming and Roorkiwal, Manish and Yang, Wei and Jian, Jianbo and Doddamani, Dadakhalandar and Gaur, Pooran M and Rathore, Abhishek and Samineni, Srinivasan and Saxena, Rachit K and Xu, Dawen and Singh, Narendra P and Chaturvedi, Sushil K and Zhang, Gengyun and Wang, Jun and Datta, Swapan K and Xu, Xun and Varshney, Rajeev K
Scientific Reports, ISSN 2045-2322, 12/2016, Volume 6, Issue 1, p. 38636
In order to understand the impact of breeding on genetic diversity and gain insights into temporal trends in diversity in chickpea, a set of 100 chickpea... 
CULTIVARS | GENOMICS | DISSECTION | MULTIDISCIPLINARY SCIENCES | SEQUENCE | BARLEY | IMPROVEMENT | MERISTEM | TRENDS | EXPRESSION | DROUGHT TOLERANCE | Genetics, Population | Quantitative Trait, Heritable | Breeding | Selection, Genetic | Linkage Disequilibrium - genetics | INDEL Mutation - genetics | Genome, Plant | Genetic Variation | Haplotypes - genetics | Time Factors | Adaptation, Physiological - genetics | Droughts | Cicer - genetics | Polymorphism, Single Nucleotide - genetics | Plant Diseases - genetics | Agriculture | Disease Resistance - genetics | Genetics | Crop improvement | Genetic diversity
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8. Full Text CarNAC4, a NAC-type chickpea transcription factor conferring enhanced drought and salt stress tolerances in Arabidopsis
by Yu, Xingwang and Liu, Yanmin and Wang, Shuang and Tao, Yuan and Wang, Zhankui and Shu, Yingjie and Peng, Hui and Mijiti, Abudoukeyumu and Wang, Ze and Zhang, Hua and Ma, Hao
Plant Cell Reports, ISSN 0721-7714, 3/2016, Volume 35, Issue 3, pp. 613 - 627
CarNAC4 is a typical stress-responsive NAC transcription factor and enhances drought and salt stress tolerances in transgenic Arabidopsis.Chickpea (Cicer... 
Life Sciences | Biotechnology | NAC transcription factor | Plant Biochemistry | Stress tolerance | Chickpea | Plant Sciences | Transgenic plants | Cell Biology | MOLECULAR RESPONSES | LOW-TEMPERATURE | PLANT SCIENCES | SIGNAL-TRANSDUCTION | CIS-ACTING ELEMENTS | REGULATORY NETWORKS | DEHYDRATION | GENE-EXPRESSION | FUNCTIONAL-ANALYSIS | DRAFT GENOME SEQUENCE | PROMOTER | Nucleotide Motifs - genetics | Sodium Chloride - pharmacology | Phylogeny | Promoter Regions, Genetic - genetics | Cicer - metabolism | Plant Proteins - classification | Adaptation, Physiological - genetics | Droughts | Base Sequence | Plants, Genetically Modified | Cicer - genetics | Salt-Tolerance - genetics | Plant Proteins - metabolism | Response Elements - genetics | Sodium Chloride - metabolism | Malondialdehyde - metabolism | Amino Acid Sequence | Transcription Factors - genetics | Reverse Transcriptase Polymerase Chain Reaction | Transcription Factors - classification | Arabidopsis - metabolism | Arabidopsis - genetics | Sequence Homology, Amino Acid | Transcription Factors - metabolism | Plant Proteins - genetics | Gene Expression Regulation, Plant - drug effects | Protein Binding | Enhancer Elements, Genetic - genetics | Plant Growth Regulators - metabolism | Plant Growth Regulators - pharmacology | Arabidopsis thaliana | Yuan (China) | Genetically modified plants | Endangered species | Analysis | Genetic research | Genetic engineering | Plants | Stress (Psychology) | Plant hormones
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9. Full Text A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
by Jain, Mukesh and Misra, Gopal and Patel, Ravi K and Priya, Pushp and Jhanwar, Shalu and Khan, Aamir W and Shah, Niraj and Singh, Vikas K and Garg, Rohini and Jeena, Ganga and Yadav, Manju and Kant, Chandra and Sharma, Priyanka and Yadav, Gitanjali and Bhatia, Sabhyata and Tyagi, Akhilesh K and Chattopadhyay, Debasis
The Plant Journal, ISSN 0960-7412, 06/2013, Volume 74, Issue 5, pp. 715 - 729
Cicer arietinum L. (chickpea) is the third most important food legume crop. We have generated the draft sequence of a desi‐type chickpea genome using... 
4958 | desi‐type | marker resource | Cicer arietinum | technical advance | ICC | genome sequence | chickpea | gene expression | ICC4958 | desi-type | LINEAGE-SPECIFIC GENES | ARABIDOPSIS-THALIANA | PHYLOGENETIC ANALYSIS | LEGUME MEDICAGO-TRUNCATULA | MODEL | IDENTIFICATION | PLANT SCIENCES | LOTUS-JAPONICUS | EVOLUTION | DIVERSITY | DIVERGENCE | Synteny | Genotype | Chromosome Mapping | Transcriptome - genetics | Genome, Plant | Phylogeny | Microsatellite Repeats - genetics | Fabaceae - classification | Genetic Variation | Plant Proteins - genetics | Plant Proteins - classification | Cicer - genetics | Base Composition - genetics | Fabaceae - genetics | Chromosomes, Plant - genetics | Sequence Analysis, DNA - methods | Legumes | Beans | RNA | Analysis | Genes | Genomics | Genetic research | Genetic aspects | Genomes | Gene expression | Mimosaceae | Plant biology | Genotype & phenotype
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10. Full Text Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
by Varshney, Rajeev K and Thudi, Mahendar and Nayak, Spurthi N and Gaur, Pooran M and Kashiwagi, Junichi and Krishnamurthy, Lakshmanan and Jaganathan, Deepa and Koppolu, Jahnavi and Bohra, Abhishek and Tripathi, Shailesh and Rathore, Abhishek and Jukanti, Aravind K and Jayalakshmi, Veera and Vemula, Anilkumar and Singh, S J and Yasin, Mohammad and Sheshshayee, M S and Viswanatha, K P
Theoretical and Applied Genetics, ISSN 0040-5752, 2/2014, Volume 127, Issue 2, pp. 445 - 462
Analysis of phenotypic data for 20 drought tolerance traits in 1–7 seasons at 1–5 locations together with genetic mapping data for two mapping populations... 
Life Sciences | Biochemistry, general | Biotechnology | Plant Biochemistry | Plant Breeding/Biotechnology | Agriculture | Plant Genetics & Genomics | LINKAGE MAP | WATER-USE | AGRONOMY | SEED YIELD | AVOIDANCE ROOT TRAITS | DIVERSITY ASSESSMENT | TERMINAL DROUGHT | PLANT SCIENCES | VARIABILITY | HORTICULTURE | GENETICS & HEREDITY | MICROSATELLITE MARKERS | STRESS | HARVEST INDEX | Analysis of Variance | Adaptation, Physiological - genetics | Droughts | Cicer - genetics | Polymerase Chain Reaction | Cicer - physiology | Quantitative Trait Loci | Chromosome mapping | Environmental aspects | Physiological aspects | Chickpea | Genetic aspects | Research | India | Index Medicus | Original Paper
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11. Full Text PROTEIN l-ISOASPARTYL METHYLTRANSFERASE2 Is Differentially Expressed in Chickpea and Enhances Seed Vigor and Longevity by Reducing Abnormal Isoaspartyl Accumulation Predominantly in Seed Nuclear Proteins
by Pooja Verma and Harmeet Kaur and Bhanu Prakash Petla and Venkateswara Rao and Saurabh C. Saxena and Manoj Majee
Plant Physiology, ISSN 0032-0889, 3/2013, Volume 161, Issue 3, pp. 1141 - 1157
PROTEIN l-ISOASPARTYL METHYLTRANSFERASE (PIMT) is a widely distributed protein-repairing enzyme that catalyzes the conversion of abnormal L-isoaspartyl... 
Proteins | Polymerase chain reaction | Enzymes | Seeds | Germination | Genes | Antibodies | Chickpeas | Longevity | Plants | BIOCHEMISTRY AND METABOLISM | SURVIVAL | ASPARTYL RESIDUES | DESICCATION TOLERANCE | O-METHYLTRANSFERASE | REPAIR METHYLTRANSFERASE | ARABIDOPSIS MUTANTS | CONTROLLED DETERIORATION | GERMINATION | CICER-ARIETINUM L | DAMAGED PROTEINS | PLANT SCIENCES | Isoaspartic Acid - metabolism | Molecular Sequence Data | Gene Expression Profiling | RNA, Messenger - metabolism | Promoter Regions, Genetic - genetics | Organ Specificity - genetics | Seeds - growth & development | Germination - genetics | Plant Proteins - chemistry | Protein D-Aspartate-L-Isoaspartate Methyltransferase - genetics | Cicer - genetics | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Nuclear Proteins - genetics | Transformation, Genetic | Amino Acid Sequence | Seeds - genetics | Alternative Splicing - genetics | RNA, Messenger - genetics | Nuclear Proteins - metabolism | Cicer - growth & development | Blotting, Western | Protein Transport | Plant Proteins - genetics | Protein D-Aspartate-L-Isoaspartate Methyltransferase - metabolism | Cicer - enzymology | Genes, Plant - genetics | Cytosol - metabolism | Subcellular Fractions - enzymology
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