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Methods, ISSN 1046-2023, 02/2017, Volume 115, pp. 80 - 90
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and manual tracking of single-particles. It offers a versatile and modular... 
Phototoxicity | Open-source software | Image analysis | Single-particle tracking | Microscopy | Clathin-mediated endocytosis | SYSTEM | CLATHRIN-MEDIATED ENDOCYTOSIS | TPLATE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | TRANSPORT | DYNAMICS | ARABIDOPSIS | CELL | EMBRYOGENESIS | Image Processing, Computer-Assisted - statistics & numerical data | Plant Cells - metabolism | Adaptor Proteins, Vesicular Transport - genetics | Cell Tracking - methods | Embryo, Nonmammalian - metabolism | Arabidopsis - ultrastructure | Clathrin - genetics | Adaptor Proteins, Vesicular Transport - metabolism | Fibroblasts - ultrastructure | Cell Tracking - statistics & numerical data | Clathrin - metabolism | Arabidopsis - metabolism | Caenorhabditis elegans | Endocytosis | Algorithms | Animals | Light Signal Transduction | Single-Cell Analysis - statistics & numerical data | Single-Cell Analysis - methods | Embryo, Nonmammalian - ultrastructure | Plant Cells - ultrastructure | Gene Expression Regulation, Plant | Software | Fibroblasts - metabolism | Index Medicus | Single-Cell Analysis/methods | Arabidopsis/metabolism | Embryo, Nonmammalian/ultrastructure | Cellular Biology | Life Sciences | Clathrin/genetics | Fibroblasts/metabolism | Cell Tracking/methods | Plant Cells/metabolism | Cell Tracking/statistics & numerical data | Arabidopsis/ultrastructure | Image Processing, Computer-Assisted/statistics & numerical data | Embryo, Nonmammalian/metabolism | Adaptor Proteins, Vesicular Transport/genetics | Clathrin/metabolism | Plant Cells/ultrastructure | Single-Cell Analysis/statistics & numerical data | Fibroblasts/ultrastructure | Adaptor Proteins, Vesicular Transport/metabolism
Journal Article
Diabetes, ISSN 0012-1797, 04/2018, Volume 67, Issue 4, pp. 581 - 593
Mammalian genomes encode a huge number of long noncoding RNAs (lncRNAs) with unknown functions. This study determined the role and mechanism of a new lncRNA,... 
INSULIN | LIPID-ACCUMULATION | DIABETIC MICE | MESSENGER-RNA | GLUCOSE-METABOLISM | PLASMID DNA | ENDOCRINOLOGY & METABOLISM | DNA ELEMENTS | EXPRESSION | ADIPOSE-TISSUE | FEEDBACK LOOP | TOR Serine-Threonine Kinases - metabolism | Calcium - metabolism | Diabetes Mellitus, Type 2 - genetics | Humans | Diabetes Mellitus, Type 2 - metabolism | Hepatocytes - metabolism | RNA, Messenger - metabolism | Gene Knockdown Techniques | Monomeric Clathrin Assembly Proteins - genetics | Lipogenesis - genetics | Monomeric Clathrin Assembly Proteins - metabolism | Proto-Oncogene Proteins c-akt - metabolism | Phosphatidylinositol 3-Kinase - metabolism | Sterol Regulatory Element Binding Protein 1 - metabolism | Disease Models, Animal | Signal Transduction | Liver - metabolism | Lipid Metabolism | Non-alcoholic Fatty Liver Disease - metabolism | RNA, Long Noncoding - genetics | Galactosyltransferases - metabolism | Heterogeneous Nuclear Ribonucleoprotein A1 - genetics | Insulin - metabolism | Animals | Gluconeogenesis - genetics | Glucose - metabolism | Mice, Obese | Mice | Blood Glucose - metabolism | Glucose metabolism | Hyperglycemia | Research | RNA | Gene expression | Risk factors | TOR protein | Phosphorylation | AKT protein | Genomes | Glucose | Fatty liver | Calcium-binding protein | Transcription activation | Sterol regulatory element-binding protein | Lipid metabolism | Lipogenesis | Diabetes mellitus (non-insulin dependent) | Calmodulin | Gluconeogenesis | Inositol | Liver diseases | Diabetes mellitus | Ribonucleic acid--RNA | Metabolism | Insulin | 1-Phosphatidylinositol 3-kinase | Steatosis | Hepatocytes | Index Medicus | Abridged Index Medicus
Journal Article
PLoS ONE, ISSN 1932-6203, 04/2012, Volume 7, Issue 4, pp. e34653 - e34653
Background: Shedding microvesicles are membrane released vesicles derived directly from the plasma membrane. Exosomes are released membrane vesicles of late... 
CA2&-STIMULATED ADENOSINE-TRIPHOSPHATASE | HUMAN PROSTATIC FLUID | EPITHELIAL-CELLS | MEMBRANE-VESICLES | BIOLOGY | HUMAN SEMEN | SPERMATOZOA | EXTRACELLULAR ORGANELLES PROSTASOMES | SECRETION | TUMOR-DERIVED EXOSOMES | HUMAN SPERM | Exosomes - metabolism | Cell Line | NIH 3T3 Cells | Microscopy, Electron, Transmission - methods | Secretory Vesicles - metabolism | DNA - metabolism | RNA, Messenger - metabolism | Clathrin - metabolism | Animals | Cell Nucleus - metabolism | Biological Transport | Myocytes, Cardiac - metabolism | Cytosol - metabolism | Cell Membrane - metabolism | Membrane Proteins - metabolism | Mice | Annexin A2 - metabolism | Caveolin 3 - metabolism | Fibroblasts - metabolism | RNA - metabolism | Clathrin | RNA | Genes | Hostages | Nucleotide sequencing | Gene expression | DNA sequencing | Heart | Flow cytometry | Sperm | Centrifugation | Lung cancer | Ultracentrifugation | Biochemistry | Exosomes | Cytosol | Nuclei | Muscular dystrophy | Gene sequencing | Vesicles | Rodents | Penicillin | Fibroblasts | Public health | Deoxyribonucleic acid--DNA | Messages | Nucleotide sequence | Caveolin | Membrane vesicles | Cardiomyocytes | Electron microscopy | Metabolism | Medicine | Polymerase | DNA nucleotidylexotransferase | Cytometry | Hospitals | Transmission electron microscopy | Ribonucleic acids | MicroRNAs | Media (differential) | Biochemical characteristics | Clinical medicine | Mutation | Prostate | Index Medicus | Cell and Molecular Biology | Basic Medicine | Medical and Health Sciences | Medicin och hälsovetenskap | Cell- och molekylärbiologi | Medicinska och farmaceutiska grundvetenskaper | Deoxyribonucleic acid | DNA
Journal Article
Journal Article
PLoS ONE, ISSN 1932-6203, 01/2016, Volume 11, Issue 1, pp. e0145155 - e0145155
The mammalian circadian clock influences most aspects of physiology and behavior through the transcriptional control of a wide variety of genes, mostly in a... 
UBIQUITIN-SPECIFIC PROTEASE | DEUBIQUITINATING ENZYME | DROSOPHILA CLOCK | METABOLISM | SUPRACHIASMATIC NUCLEUS | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | MOUSE | GENE-EXPRESSION | DEUBIQUITYLATION | N-TERMINAL SEQUENCES | Up-Regulation | Intestinal Mucosa - metabolism | Calcium - metabolism | Absorption, Physiological | Humans | Mice, Inbred C57BL | Homeostasis | Male | Phosphoproteins - metabolism | Mice, Knockout | Sodium-Hydrogen Exchangers - metabolism | Drosophila melanogaster - metabolism | Membranes - metabolism | Locomotion | Animals | Clathrin Heavy Chains - metabolism | Hypercalciuria - metabolism | Models, Biological | HEK293 Cells | Circadian Clocks | Protein Binding | Protein Processing, Post-Translational | Ubiquitin-Specific Proteases - metabolism | Cryptochromes - metabolism | Circadian rhythms | Post-translational modification | Physiological aspects | Genetic aspects | Research | Calcium ions | Ubiquitin | Clathrin | Membranes | Ubiquitin-specific proteinase | Transcription | Calcium | Genes | Membrane permeability | Genomes | Small intestine | Calcium influx | Proteins | Toxicology | Rodents | Animal tissues | Post-translation | Evolution | Physiology | Supplementation | Calcium homeostasis | Translation | Calcium (dietary) | Drosophila | Dietary supplements | Pupation | Pharmacology | Cell membranes | Permeability | Rhythms | Circadian rhythm | Gene expression | Mammals | Cell membranes (biology) | Calcium permeability | Membrane proteins | Calcium absorption | Insects | Diet | Proteomics | Cryptochromes | Index Medicus
Journal Article
Journal of Cell Biology, ISSN 0021-9525, 11/2017, Volume 216, Issue 11, pp. 3745 - 3765
The conditional use of actin during clathrin-mediated endocytosis in mammalian cells suggests that the cell controls whether and how actin is used. Using a... 
RECRUITMENT | ENDOSOMES | SELECTIVE INHIBITOR | LOWE | BAR PROTEINS | CYTOSKELETON | MEDIATED ENDOCYTOSIS | DYNAMIN | OCRL | MULTIPLE | CELL BIOLOGY | Oculocerebrorenal Syndrome - genetics | Retinal Pigment Epithelium - metabolism | Sorting Nexins - genetics | Phosphatidylinositol Phosphates - metabolism | Cytoskeletal Proteins - genetics | Humans | Protein Multimerization | Actins - metabolism | Actin-Related Protein 2-3 Complex - genetics | cdc42 GTP-Binding Protein - metabolism | Intracellular Signaling Peptides and Proteins - metabolism | Clathrin-Coated Vesicles - metabolism | Phosphatidylinositol 4,5-Diphosphate - metabolism | Actin-Related Protein 2-3 Complex - metabolism | Endocytosis | Transfection | RNA Interference | Time Factors | Cytoskeletal Proteins - metabolism | Phosphatidylinositols - metabolism | Sorting Nexins - metabolism | Wiskott-Aldrich Syndrome Protein, Neuronal - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Coated Pits, Cell-Membrane - metabolism | Phosphoric Monoester Hydrolases - genetics | Signal Transduction | Xenopus laevis | Clathrin - metabolism | Hydrolysis | Animals | cdc42 GTP-Binding Protein - genetics | CRISPR-Cas Systems | Oculocerebrorenal Syndrome - metabolism | HeLa Cells | Phosphoric Monoester Hydrolases - metabolism | Wiskott-Aldrich Syndrome Protein, Neuronal - genetics | Coated pits | Cdc42 protein | Comets | Cell culture | Clathrin | Phosphoinositides | Guanosine | Polymerization | Biochemistry | Mammals | Cells | Polyimide resins | Mammalian cells | Signaling | Actin | Cytoskeleton | Curvature | Index Medicus | Biological Sciences | Naturvetenskap | Natural Sciences | Cellbiologi | Biologiska vetenskaper | Cell Biology
Journal Article
Journal Article
Journal Article
Journal Article
Journal Article
The FEBS Journal, ISSN 1742-464X, 10/2017, Volume 284, Issue 19, pp. 3218 - 3229
Bridging integrator 1 ( bin1 ) gene is a genetic determinant of Alzheimer's disease (AD) and has been reported to modulate Alzheimer's pathogenesis through... 
nuclear magnetic resonance spectroscopy | protein–protein interaction | Tau | Alzheimer's disease | BIN | 3 domain | SH3 domain | BIN1 | ALZHEIMERS-DISEASE | NMR-SPECTROSCOPY | BIOCHEMISTRY & MOLECULAR BIOLOGY | PATHOLOGY | MODEL | IDENTIFIES VARIANTS | AMPHIPHYSIN | MEMBRANE CURVATURE | protein-protein interaction | BINDING | EXPRESSION | GENOME-WIDE ASSOCIATION | Adaptor Proteins, Signal Transducing - chemistry | Humans | Peptides - genetics | tau Proteins - metabolism | tau Proteins - chemistry | Peptides - metabolism | Protein Isoforms - metabolism | tau Proteins - genetics | Protein Isoforms - chemistry | Tumor Suppressor Proteins - chemistry | Tumor Suppressor Proteins - genetics | Cloning, Molecular | Escherichia coli - metabolism | Nuclear Magnetic Resonance, Biomolecular | Neurons - metabolism | Protein Interaction Domains and Motifs | Nuclear Proteins - genetics | Binding Sites | Recombinant Proteins - metabolism | Protein Conformation, alpha-Helical | Gene Expression | Tumor Suppressor Proteins - metabolism | Neurons - chemistry | Peptides - chemistry | Models, Molecular | Recombinant Proteins - chemistry | Nuclear Proteins - metabolism | Recombinant Proteins - genetics | Nuclear Proteins - chemistry | Amino Acid Motifs | Sequence Homology, Amino Acid | Sequence Alignment | Protein Conformation, beta-Strand | Escherichia coli - genetics | Adaptor Proteins, Signal Transducing - genetics | Protein Binding | Kinetics | Adaptor Proteins, Signal Transducing - metabolism | Protein Isoforms - genetics | Nuclear magnetic resonance spectroscopy | Neurons | Protein-protein interactions | Spectroscopy | Clathrin | Nuclear magnetic resonance--NMR | Peptides | Neurodegenerative diseases | Pathogenesis | Complexity | Proteins | Magnetic resonance spectroscopy | Tau protein | Spectrum analysis | Isoforms | Alzheimers disease | Binding sites | Index Medicus | tau Proteins/metabolism | Nuclear Proteins/chemistry | Protein Isoforms/chemistry | Protein Isoforms/genetics | Adaptor Proteins, Signal Transducing/genetics | Recombinant Proteins/metabolism | Peptides/metabolism | Life Sciences | Recombinant Proteins/chemistry | Adaptor Proteins, Signal Transducing/chemistry | Nuclear Proteins/metabolism | Tumor Suppressor Proteins/chemistry | Nuclear Proteins/genetics | Tumor Suppressor Proteins/metabolism | Protein Isoforms/metabolism | Peptides/chemistry | Recombinant Proteins/genetics | Biochemistry, Molecular Biology | Escherichia coli/genetics | Escherichia coli/metabolism | Adaptor Proteins, Signal Transducing/metabolism | Neurons/chemistry | Tumor Suppressor Proteins/genetics | tau Proteins/genetics | Neurons/metabolism | Peptides/genetics | tau Proteins/chemistry
Journal Article