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1. Full Text Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies
by Doria-Rose, Nicole A and Schramm, Chaim A and Gorman, Jason and Moore, Penny L and Bhiman, Jinal N and Dekosky, Brandon J and Ernandes, Michael J and Georgiev, Ivelin S and Kim, Helen J and Pancera, Marie and Staupe, Ryan P and Altae-Tran, Han R and Bailer, Robert T and Crooks, Ema T and Cupo, Albert and z, Aliaksan and Garrett, Nigel J and Hoi, Kam H and Kong, Rui and Louder, Mark K and Longo, Nancy S and McKee, Krisha and Nonyane, Molati and O'Dell, Sijy and Roark, Ryan S and Rudicell, Rebecca S and Schmidt, Stephen D and Sheward, Daniel J and Soto, Cinque and Wibmer, Constantinos Kurt and Yang, Yongping and Zhang, Zhenhai and Mullikin, James C and Binley, James M and Sanders, Rogier W and Wilson, Ian A and Moore, John P and Ward, Anew B and Georgiou, George and Williamson, Carolyn and Abdool Karim, Salim S and Morris, Lynn and Kwong, Peter D and Shapiro, Lawrence and Mascola, John R and Becker, Jesse and Benjamin, Betty and Blakesley, Robert and Bouffard, Gerry and Brooks, Shelise and Coleman, Holly and Dekhtyar, Mila and Gregory, Michael and Guan, Xiaobin and Gupta, Jyoti and Han, Joel and Hargrove, April and Ho, Shi-ling and Johnson, Taccara and Legaspi, Richelle and Lovett, Sean and Maduro, Quino and Masiello, Cathy and Maskeri, Baishali and McDowell, Jenny and Montemayor, Casana and Mullikin, James and Park, Morgan and Riebow, Nancy and Schandler, Karen and Schmidt, Brian and Sison, Christina and Stantripop, Mal and Thomas, James and Thomas, Pam and Vemulapalli, Meg and Young, Alice and NISC Comparative Sequencing and NISC Comparative Sequencing Program
Nature, ISSN 0028-0836, 2014, Volume 509, Issue 7498, pp. 55 - 62
Antibodies capable of neutralizing HIV-1 often target variable regions 1 and 2 (V1V2) of the HIV-1 envelope, but the mechanism of their elicitation has been... 
B-CELLS | MAXIMUM-LIKELIHOOD | STRUCTURAL BASIS | HIV-1-NEUTRALIZING ANTIBODIES | MULTIDISCIPLINARY SCIENCES | IMMUNODEFICIENCY-VIRUS TYPE-1 | VACCINE EFFICACY | INFECTION | BROAD | HUMAN MONOCLONAL-ANTIBODIES | ENVELOPE TRIMER | Complementarity Determining Regions - genetics | Epitope Mapping | Epitopes, B-Lymphocyte - chemistry | Humans | AIDS Vaccines - immunology | Molecular Sequence Data | Antibody Affinity - immunology | Neutralization Tests | Epitopes, B-Lymphocyte - immunology | HIV Antibodies - isolation & purification | HIV Infections - immunology | Antibodies, Neutralizing - immunology | HIV Antibodies - immunology | HIV Envelope Protein gp160 - chemistry | Complementarity Determining Regions - chemistry | HIV-1 - chemistry | Binding Sites - immunology | B-Lymphocytes - metabolism | Protein Structure, Tertiary | Amino Acid Sequence | CD4 Antigens - immunology | B-Lymphocytes - cytology | Models, Molecular | Antibody Affinity - genetics | Antibodies, Neutralizing - genetics | HIV Antibodies - chemistry | AIDS Vaccines - chemistry | Antibodies, Neutralizing - isolation & purification | Cell Lineage | HIV-1 - immunology | B-Lymphocytes - immunology | Antibodies, Neutralizing - chemistry | Complementarity Determining Regions - immunology | HIV Envelope Protein gp160 - immunology | HIV Antibodies - genetics | Somatic Hypermutation, Immunoglobulin - genetics | CD4 Antigens - metabolism | Evolution, Molecular | Viral antibodies | Antigen-antibody reactions | AIDS vaccines | AIDS (Disease) | Antibodies | Physiological aspects | Research | AIDS research | Cell culture | Genes | Human immunodeficiency virus--HIV | Phylogenetics | Amino acids | Infections | Genomes | Mutation | Index Medicus
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2. Full Text Cross-neutralization of influenza A viruses mediated by a single antibody loop
by Ekiert, Damian C and Kashyap, Arun K and Steel, John and Rubrum, Adam and Bhabha, Gira and Khayat, Reza and Lee, Jeong Hyun and Dillon, Michael A and O'Neil, Ryann E and Faynboym, Aleksandr M and Horowitz, Michael and Horowitz, Lawrence and Ward, Andrew B and Palese, Peter and Webby, Richard and Lerner, Richard A and Bhatt, Ramesh R and Wilson, Ian A
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7417, pp. 526 - 532
Immune recognition of protein antigens relies on the combined interaction of multiple antibody loops, which provide a fairly large footprint and constrain the... 
HIV-1 | SYSTEM | POTENT NEUTRALIZATION | EPITOPE | HEMAGGLUTININ | RECOGNITION | STRUCTURAL BASIS | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | BINDING-SITE | BROAD | Influenza A Virus, H1N1 Subtype - immunology | Orthomyxoviridae Infections - prevention & control | Complementarity Determining Regions - genetics | Influenza A virus - chemistry | Cross Reactions - genetics | Molecular Sequence Data | Crystallography, X-Ray | Antibody Specificity - genetics | Hemagglutinin Glycoproteins, Influenza Virus - immunology | Epitopes - immunology | Antibodies, Neutralizing - immunology | Antibody Specificity - immunology | Complementarity Determining Regions - chemistry | Conserved Sequence | Influenza A virus - immunology | Binding Sites | Hemagglutinin Glycoproteins, Influenza Virus - chemistry | Enzyme-Linked Immunosorbent Assay | Models, Molecular | Antigens, Viral - chemistry | Antibodies, Neutralizing - genetics | Cross Reactions - immunology | Influenza A Virus, H3N2 Subtype - immunology | Mutation - genetics | Antigens, Viral - immunology | Animals | Influenza A Virus, H3N2 Subtype - chemistry | Influenza Vaccines - immunology | Antibodies, Neutralizing - chemistry | Antibodies, Viral - chemistry | Complementarity Determining Regions - immunology | Antibodies, Viral - immunology | Protein Conformation | Epitopes - chemistry | Influenza A Virus, H1N1 Subtype - chemistry | Mice | Influenza A virus - classification | Orthomyxoviridae Infections - virology | Antibodies, Viral - genetics | Orthomyxoviridae Infections - immunology | Influenza viruses | Agglutinins | Viruses | Complementarity-determining regions | Research | Observations | Inactivation | Proteins | Infections | Binding sites | Index Medicus
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3. Full Text Landscape of tumor-infiltrating T cell repertoire of human cancers
by Li, Bo and Li, Taiwen and Pignon, Jean-Christophe and Wang, Binbin and Wang, Jinzeng and Shukla, Sachet A and Dou, Ruoxu and Chen, Qianming and Hodi, F Stephen and Choueiri, Toni K and Wu, Catherine and Hacohen, Nir and Signoretti, Sabina and Liu, Jun S and Liu, X. Shirley
Nature Genetics, ISSN 1061-4036, 07/2016, Volume 48, Issue 7, pp. 725 - 732
We developed a computational method to infer the complementarity-determining region 3 (CDR3) sequences of tumor-infiltrating T cells in 9,142 RNA-seq samples... 
RECOGNITION | AFFINITY | SEQUENCE | LENGTH | GENETICS & HEREDITY | BLOCKADE | RECEPTORS | RNA-SEQ READS | ANTIGEN | T-Lymphocyte Subsets - immunology | Antigens, Neoplasm - genetics | Complementarity Determining Regions - genetics | Humans | HLA Antigens - genetics | Mutation - genetics | Receptors, Antigen, T-Cell, alpha-beta - genetics | Neoplasms - genetics | Neoplasms - immunology | T-Lymphocyte Subsets - metabolism | Lymphocytes, Tumor-Infiltrating - metabolism | High-Throughput Nucleotide Sequencing - methods | Neoplasm Proteins - genetics | Lymphocytes, Tumor-Infiltrating - immunology | Gene mutations | Innovations | Genetic aspects | Complementarity-determining regions | Identification and classification | Carcinogenesis | Health aspects | Computational biology | Performance evaluation | Antigens | Statistical analysis | Sample size | Cloning | T cell receptors | Genomes | Lymphocytes | Immunotherapy | Mutation | Methods | Deoxyribonucleic acid--DNA | Tumors | Cancer | Index Medicus
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4. Full Text Rapid development of broadly influenza neutralizing antibodies through redundant mutations
by Pappas, Leontios and Pappas, Leontios and Foglierini, Mathilde and Piccoli, Luca and Kallewaard, Nicole L and Turrini, Filippo and Silacci, Chiara and Fernandez-Rodriguez, Blanca and Agatic, Gloria and Giacchetto-Sasselli, Isabella and Pellicciotta, Gabriele and Sallusto, Federica and Zhu, Qing and Vicenzi, Elisa and Corti, Davide and Lanzavecchia, Antonio
Nature, ISSN 0028-0836, 12/2014, Volume 516, Issue 7531, pp. 418 - 422
The neutralizing antibody response to influenza virus is dominated by antibodies that bind to the globular head of haemagglutinin, which undergoes a continuous... 
SEQUENCE-ANALYSIS | IMMUNE-RESPONSE | MEMORY B-CELLS | VIRUS | HEMAGGLUTININ | AFFINITY MATURATION | MULTIDISCIPLINARY SCIENCES | GERMINAL-CENTERS | GENERATION | MONOCLONAL-ANTIBODIES | EXPRESSION | Protein Structure, Tertiary | Amino Acid Sequence | Complementarity Determining Regions - genetics | Protein Binding - genetics | Humans | Middle Aged | Cells, Cultured | Models, Molecular | Orthomyxoviridae - metabolism | Male | Antibodies, Neutralizing - genetics | Hemagglutinin Glycoproteins, Influenza Virus - immunology | Mutation - genetics | Orthomyxoviridae - immunology | Polymorphism, Genetic | Young Adult | Complementarity Determining Regions - chemistry | Adult | Female | Influenza, Human - virology | Immunoglobulin Heavy Chains - genetics | Influenza, Human - immunology | Viral antibodies | Gene mutations | Antibodies | Genetic aspects | Health aspects | Protein binding | Influenza research | Antigens | Viruses | Mutation | Rodents | Influenza | Cloning | Index Medicus
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5. Full Text CDR-H3 Diversity Is Not Required for Antigen Recognition by Synthetic Antibodies
by Persson, Helena and Ye, Wei and Wernimont, Amy and Adams, Jarrett J and Koide, Shohei and Koide, Akiko and Lam, Robert and Sidhu, Sachdev S
Journal of Molecular Biology, ISSN 0022-2836, 02/2013, Volume 425, Issue 4, pp. 803 - 811
A synthetic phage-displayed antibody repertoire was constructed with equivalent chemical diversity in the third complementarity-determining regions of the... 
specificity | protein engineering | antibody library | phage display | affinity | BIOCHEMISTRY & MOLECULAR BIOLOGY | IMMUNOGLOBULIN | IDENTIFICATION | REPERTOIRES | SOFTWARE | LIBRARIES | COMPLEMENTARITY-DETERMINING REGIONS | SPECIFICITY-DETERMINING RESIDUES | MOLECULAR RECOGNITION | BINDING-SITE | MACROMOLECULAR CRYSTALLOGRAPHY | Amino Acid Sequence | Complementarity Determining Regions - genetics | Immunoglobulin Fab Fragments - genetics | Antibodies - chemistry | Immunoglobulin Heavy Chains - chemistry | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | Peptide Library | Sequence Homology, Amino Acid | Hydrogen Bonding | Complementarity Determining Regions - chemistry | Immunoglobulin Fab Fragments - chemistry | Antibodies - immunology | Complementarity Determining Regions - immunology | Antibodies - genetics | Antigens - immunology | Protein Conformation | Immunoglobulin Fab Fragments - immunology | Genetic Variation - immunology | Immunoglobulin Heavy Chains - immunology | Immunoglobulin Heavy Chains - genetics | Viral antibodies | Antibodies | Antigens | Analysis | Index Medicus
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6. Full Text Shaping of human germline IgH repertoires revealed by deep sequencing
by Larimore, Kevin and McCormick, Michael W and Robins, Harlan S and Greenberg, Philip D
Journal of Immunology, ISSN 0022-1767, 09/2012, Volume 189, Issue 6, pp. 3221 - 3230
To understand better how selection processes balance the benefits of Ig repertoire diversity with the risks of autoreactivity and nonfunctionality of highly... 
HEAVY-CHAIN | CONFORMATIONAL EPITOPE | BROADLY NEUTRALIZING ANTIBODIES | CHAIN CDR3 REGIONS | IMMUNODEFICIENCY-VIRUS TYPE-1 | CANONICAL STRUCTURES | ANTIGEN-BINDING | NO EVIDENCE | MONOCLONAL-ANTIBODY | IMMUNOLOGY | IMMUNOGLOBULIN HEAVY | Complementarity Determining Regions - genetics | Conserved Sequence - genetics | Immunoglobulin Heavy Chains - biosynthesis | Humans | Immunoglobulin Variable Region - biosynthesis | B-Lymphocyte Subsets - cytology | Gene Rearrangement, B-Lymphocyte - immunology | Immunoglobulin Joining Region - biosynthesis | Cell Differentiation - genetics | B-Lymphocyte Subsets - immunology | Conserved Sequence - immunology | Protein Precursors - genetics | Somatic Hypermutation, Immunoglobulin | Computational Biology | Antibodies, Neutralizing - genetics | Immunoglobulin Joining Region - genetics | HIV-1 - genetics | Cell Differentiation - immunology | Complementarity Determining Regions - biosynthesis | HIV-1 - immunology | B-Lymphocyte Subsets - metabolism | Antibodies, Neutralizing - biosynthesis | Protein Precursors - biosynthesis | Immunoglobulin Variable Region - genetics | Sequence Analysis, DNA - methods | Immunoglobulin Heavy Chains - genetics | Index Medicus | Abridged Index Medicus
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7. Full Text Generation of high-affinity human antibodies by combining donor-derived and synthetic complementarity-determining-region diversity
by Steukers, Mieke and Hufton, Simon E and Rem, Louise and van Hegelsom, Rob and Nastri, Horacio G and Neer, Nicole Coolen-van and Pieters, Henk and Daukandt, Marc and Hogan, Shannon and Frans, Nicolas and Sexton, Daniel J and Viswanathan, Malini and Hoet, René Michael and Kent, Rachel Baribault and Rookey, Kristin and Nixon, Andrew E and Leeds, Jennifer A and Rondon, Isaac J and Schoonbroodt, Sonia and Huang, Lili and Devlin, Mary and Cohen, Edward H and Kashin, Irina and Kuang, Guannan and Ladner, Robert Charles and Hoogenboom, Hennie R
Nature Biotechnology, ISSN 1087-0156, 03/2005, Volume 23, Issue 3, pp. 344 - 348
Combinatorial libraries of rearranged hypervariable VH and VL sequences from nonimmunized human donors contain antigen specificities, including anti-self... 
LIBRARIES | HEAVY | PROTEIN | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PHAGE DISPLAY | RECEPTOR | MATURATION | CANCER | ANTIGEN | Complementarity Determining Regions - genetics | Immunoglobulin Fab Fragments - genetics | Protein Engineering - methods | Humans | Antibody Affinity | Peptide Library | Immunoglobulin Fab Fragments - biosynthesis | Antibody Formation | Protein Binding | Recombination, Genetic - genetics | Genetic Variation - genetics | Immunoglobulin Fab Fragments - immunology | Tissue Donors | Index Medicus
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8. Full Text Shared and restricted T-cell receptor use is crucial for carbamazepine-induced Stevens-Johnson syndrome
by Ko, Tai-Ming, MS and Chung, Wen-Hung, MD, PhD and Wei, Chun-Yu, MS and Shih, Han-Yu, MS and Chen, Jung-Kuei, MS and Lin, Chia-Hsien, MS and Chen, Yuan-Tsong, MD, PhD and Hung, Shuen-Iu, PhD
Journal of Allergy and Clinical Immunology, The, ISSN 0091-6749, 2011, Volume 128, Issue 6, pp. 1266 - 1276.e11
Background Stevens-Johnson syndrome (SJS) and its related disease, toxic epidermal necrolysis (TEN), are life-threatening drug hypersensitivities with robust... 
Allergy and Immunology | T-cell receptor | third complementarity-determining region | Stevens-Johnson syndrome | Drug hypersensitivity | HLA | toxic epidermal necrolysis | ACTIVATION | RISK | IMMUNOLOGY | OXCARBAZEPINE | LIVER-INJURY | ALLERGY | HLA-B-ASTERISK-1502 ALLELE | HAN CHINESE | ASSOCIATION | CLONES | Complementarity Determining Regions - genetics | Stevens-Johnson Syndrome - immunology | Humans | Male | HLA Antigens - genetics | Stevens-Johnson Syndrome - chemically induced | Anticonvulsants - adverse effects | Flow Cytometry | T-Lymphocytes - drug effects | Drug Hypersensitivity - genetics | Adult | Female | Receptors, Antigen, T-Cell - immunology | Real-Time Polymerase Chain Reaction | Genetic Predisposition to Disease - genetics | Enzyme-Linked Immunosorbent Assay | Cell Separation | Biomarkers - analysis | Cells, Cultured | HLA Antigens - immunology | Carbamazepine - immunology | Stevens-Johnson Syndrome - genetics | Carbamazepine - adverse effects | Drug Hypersensitivity - immunology | Complementarity Determining Regions - immunology | Receptors, Antigen, T-Cell - genetics | Medical colleges | Gabapentin | T cells | Carbamazepine | Flow cytometry | Lymphocytes | Cloning | Cytotoxicity | T cell receptors | Patients | Immune system | Index Medicus | Abridged Index Medicus
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9. Full Text Pentameric complex of viral glycoprotein H is the primary target for potent neutralization by a human cytomegalovirus vaccine
by Daniel C. Freed and Qi Tang and Aimin Tang and Fengsheng Li and Xi He and Zhao Huang and Weixu Meng and Lin Xia and Adam C. Finnefrock and Eberhard Durr and Amy S. Espeseth and Danilo R. Casimiro and Ningyan Zhang and John W. Shiver and Dai Wang and Zhiqiang An and Tong-Ming Fu
Proceedings of the National Academy of Sciences, ISSN 0027-8424, 12/2013, Volume 110, Issue 51, pp. E4997 - E5005
Human cytomegalovirus (HCMV) can cause serious morbidity/ mortality in transplant patients, and congenital HCMV infection can lead to birth defects. Developing... 
Antiviral antibody | Monoclonal antibody | NATURAL INFECTION | VIRUS-INFECTION | LINKED-IMMUNOSORBENT-ASSAY | MULTIDISCIPLINARY SCIENCES | PRIMARY INFECTION | SMOOTH-MUSCLE | ORGAN TRANSPLANT RECIPIENTS | CMV-HYPERIMMUNE GLOBULIN | antiviral antibody | EPITHELIAL-CELLS | ENDOTHELIAL-CELLS | monoclonal antibody | ANTIBODY-RESPONSE | Complementarity Determining Regions - genetics | Humans | Multiprotein Complexes - genetics | Cytomegalovirus Infections - immunology | Cytomegalovirus Infections - genetics | Immunoglobulin Light Chains - genetics | Antibodies, Neutralizing - immunology | Cytomegalovirus Infections - prevention & control | Female | Membrane Glycoproteins - immunology | Immunoglobulin Heavy Chains - immunology | Antibodies, Monoclonal - immunology | Cytomegalovirus Vaccines - genetics | Immunoglobulin Light Chains - immunology | Cytomegalovirus - genetics | Rabbits | Viral Envelope Proteins - genetics | Antibodies, Neutralizing - genetics | Membrane Glycoproteins - genetics | Antibodies, Monoclonal - genetics | Cytomegalovirus - immunology | Animals | Complementarity Determining Regions - immunology | Antibodies, Viral - immunology | Viral Envelope Proteins - immunology | Cytomegalovirus Vaccines - immunology | Antibodies, Viral - genetics | Immunoglobulin Heavy Chains - genetics | Multiprotein Complexes - immunology | Antigens | Immunology | Monoclonal antibodies | Viruses | Glycoproteins | Vaccines | Gene expression | Index Medicus | Biological Sciences | PNAS Plus
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10. Full Text Mechanism of HIV-1 Neutralization by Antibodies Targeting a Membrane-Proximal Region of gp41
by Jia Chen and Gary Frey and Hanqin Peng and Sophia Rits-Volloch and Jetta Garrity and Michael S. Seaman and Bing Chen
Journal of Virology, ISSN 0022-538X, 01/2014, Volume 88, Issue 2, pp. 1249 - 1258
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
VIRAL MEMBRANE | RESPONSES | POTENT | DESIGN | EPITOPE | FUSION | VIROLOGY | EXTERNAL REGION | ENVELOPE | IMMUNODEFICIENCY-VIRUS TYPE-1 | INFECTION | Cell Line | Complementarity Determining Regions - genetics | HIV Envelope Protein gp41 - genetics | HIV Envelope Protein gp41 - immunology | HIV Infections - virology | Humans | Neutralization Tests | Antibodies, Neutralizing - genetics | HIV Envelope Protein gp41 - chemistry | HIV-1 - genetics | HIV Antibodies - chemistry | Amino Acid Motifs | HIV Infections - immunology | Antibodies, Neutralizing - immunology | HIV-1 - immunology | HIV Antibodies - immunology | Complementarity Determining Regions - chemistry | HIV-1 - chemistry | Antibodies, Neutralizing - chemistry | Complementarity Determining Regions - immunology | Cell Membrane - virology | HIV Antibodies - genetics | Index Medicus | Vaccines and Antiviral Agents
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