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1. Full Text Supramolecular nanofibers and hydrogels of nucleopeptides
by Li, Xinming and Kuang, Yi and Lin, Hsin-Chieh and Gao, Yuan and Shi, Junfeng and Xu, Bing
Angewandte Chemie - International Edition, ISSN 1433-7851, 09/2011, Volume 50, Issue 40, pp. 9365 - 9369
nucleopeptides | hydrogels | biocompatibility | supramolecular chemistry | nanofibers | PNA | SMALL MOLECULES | SOLID-PHASE SYNTHESIS | OLIGONUCLEOTIDE | BOLAAMPHIPHILES | ORGANIC LIQUIDS | RELEASE | CHEMISTRY, MULTIDISCIPLINARY | ENZYME | HYDROPHOBIC DIPEPTIDES | DNA | Nanofibers - chemistry | Nucleoproteins - chemistry | Thymine - chemistry | Deoxyadenosines - chemistry | Peptides - chemistry | Rheology | Humans | Cytosine - chemistry | Dipeptides - chemistry | Adenine - chemistry | Nucleoproteins - chemical synthesis | Biocompatible Materials | Guanine - chemistry | Molecular Structure | HeLa Cells | Circular Dichroism | Hydrogels - chemistry | biocompatible | supramolecular
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2. Full Text Mononuclear iron enzymes are primary targets of hydrogen peroxide stress
by Anjem, Adil and Imlay, James A
Journal of Biological Chemistry, ISSN 0021-9258, 05/2012, Volume 287, Issue 19, pp. 15544 - 15556
This study tested whether nonredox metalloenzymes are commonly charged with iron in vivo and are primary targets of oxidative stress because of it. Indeed,... 
OXIDATIVE STRESS | L-THREONINE DEHYDROGENASE | BACILLUS-SUBTILIS | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | CYTOSINE DEAMINASE | PROTEIN-TYROSINE PHOSPHATASES | CATALYTIC MECHANISM | TRANSCRIPTION FACTOR | Apoproteins - chemistry | Oxidants - pharmacology | Models, Chemical | Alcohol Oxidoreductases - genetics | Cytosine Deaminase - metabolism | Biocatalysis - drug effects | Cation Transport Proteins - metabolism | Cytosine Deaminase - chemistry | Escherichia coli - metabolism | Oxidation-Reduction - drug effects | Cation Transport Proteins - genetics | Cysteine - metabolism | Apoproteins - metabolism | Bacterial Outer Membrane Proteins - genetics | Cytosine Deaminase - genetics | Amidohydrolases - metabolism | Catalytic Domain | Escherichia coli - enzymology | Amidohydrolases - genetics | Iron - chemistry | Hydrogen Peroxide - pharmacology | Bacterial Outer Membrane Proteins - chemistry | Alcohol Oxidoreductases - metabolism | Escherichia coli Proteins - metabolism | Cysteine - chemistry | Manganese - chemistry | Amidohydrolases - chemistry | Iron - metabolism | Blotting, Western | Manganese - metabolism | Bacterial Outer Membrane Proteins - metabolism | Alcohol Oxidoreductases - chemistry | Escherichia coli - genetics | Escherichia coli Proteins - genetics | Kinetics | Mutation | Cation Transport Proteins - chemistry | Escherichia coli Proteins - chemistry | Oxidative stress | Fenton Reaction | Microbiology | Iron | Metalloenzymes | Peptide Deformylase | Manganese | Sulfhydryl | Sulfhydryl Oxidation
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3. Full Text Cucurbit[7]uril-Driven Host-Guest Chemistry for Reversible Intervention of 5-Formylcytosine-Targeted Biochemical Reactions
by Wang, Shao-Ru and Song, Yan-Yan and Wei, Lai and Liu, Chao-Xing and Fu, Bo-Shi and Wang, Jia-Qi and Yang, Xi-Ran and Liu, Yi-Nong and Liu, Si-Min and Tian, Tian and Zhou, Xiang
Journal of the American Chemical Society, ISSN 0002-7863, 11/2017, Volume 139, Issue 46, pp. 16903 - 16912
5-Formylcytosine (5fC) is identified as one of the key players in active DNA demethylation and also as an epigenetic mark in mammals, thus representing a novel... 
SINGLE-BASE RESOLUTION | BIOTIN-AVIDIN PAIR | MAMMALIAN DNA | MOLECULAR RECOGNITION | 5-HYDROXYMETHYLCYTOSINE | THYMINE DNA | TET PROTEINS | SUPRAMOLECULAR CHEMISTRY | CHEMISTRY, MULTIDISCIPLINARY | RESTRICTION-ENDONUCLEASE | 5-CARBOXYLCYTOSINE | Cytosine - analogs & derivatives | Nucleosides - chemistry | Adamantane - metabolism | Imidazoles - chemistry | Bridged-Ring Compounds - metabolism | DNA - metabolism | Aldehydes - metabolism | Cytosine - chemistry | DNA - chemistry | Molecular Probes - chemistry | Bridged-Ring Compounds - chemistry | Molecular Probes - metabolism | Cytosine - metabolism | Nucleosides - metabolism | Molecular Structure | Adamantane - chemistry | Aldehydes - chemistry | Imidazoles - metabolism
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4. Full Text Genetic and functional diversification of small RNA pathways in plants
by Xie, Zhixin and Johansen, Lisa K and Gustafson, Adam M and Kasschau, Kristin D and Lellis, Andrew D and Zilberman, Daniel and Jacobsen, Steven E and Carrington, James C
PLoS Biology, ISSN 1544-9173, 2004, Volume 2, Issue 5, pp. 642 - 652
Multicellular eukaryotes produce small RNA molecules (approximately 21-24 nucleotides) of two general types, microRNA (miRNA) and short interfering RNA... 
PAZ DOMAIN | ARABIDOPSIS-THALIANA | GERM-LINE DEVELOPMENT | DNA METHYLATION | SHORT INTERFERING RNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | DICER HOMOLOG | POLYMERASE | C-ELEGANS | EXPRESSION | MICRORNA | Exons | Genes, Plant | Histones - chemistry | Molecular Sequence Data | Plants - virology | Immunoblotting | Heterochromatin - chemistry | RNA, Small Interfering - chemistry | DNA Methylation | RNA, Viral - genetics | Green Fluorescent Proteins - chemistry | Chromatin - chemistry | Introns | Recombinant Fusion Proteins - chemistry | Cytosine - chemistry | RNA - chemistry | Arabidopsis - genetics | RNA Replicase - chemistry | Models, Genetic | Software | Mutation | Methylation | MicroRNAs - chemistry | Evolution, Molecular | RNA, Small Interfering - metabolism | Plant Science | Evolution | Genetics | Gene Therapy | Arabidopsis | Genomics | Proteins | RNA | Ribonucleic acid | Genes | Deoxyribonucleic acid | DNA | DNA methylation
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5. Full Text Simple and accurate single base resolution analysis of 5-hydroxymethylcytosine by catalytic oxidative bisulfite sequencing using micelle incarcerated oxidants
by Fukuzawa, Seketsu and Takahashi, Saori and Tachibana, Kazuo and Tajima, Shoji and Suetake, Isao
Bioorganic & Medicinal Chemistry, ISSN 0968-0896, 09/2016, Volume 24, Issue 18, pp. 4254 - 4262
Oxidation of 5-methylcytosine (5mC) is catalyzed by ten-eleven translocation (TET) enzymes to produce 5-hydroxymethylcytosine (5hmC) and following oxidative... 
DNA demethylation | Oxidation | 5-Hydroxymethylcytosine | Bisulfite sequencing | Single base resolution | DEAMINATION | CHEMISTRY, MEDICINAL | MAMMALIAN DNA | 5-METHYLCYTOSINE | SODIUM BISULFITE | BIOCHEMISTRY & MOLECULAR BIOLOGY | CHEMISTRY, ORGANIC | TET PROTEINS | CYTOSINE | GENOME | 5-CARBOXYLCYTOSINE | 5-FORMYLCYTOSINE | Cytosine - analogs & derivatives | Temperature | Oxidants - chemistry | Oxidation-Reduction | 5-Methylcytosine - analogs & derivatives | Cytosine - chemistry | 5-Methylcytosine - chemistry | DNA, Single-Stranded - chemistry | Sulfites - chemistry | Cyclic N-Oxides - chemistry | Animals | Iodobenzenes - chemistry | Sodium Dodecyl Sulfate - chemistry | Micelles | Mice | Adamantane - chemistry | Embryonic Stem Cells | Onium Compounds - chemistry | Sequence Analysis, DNA - methods | Adamantane - analogs & derivatives | Sulfites | Analysis | Prisoners | Epigenetic inheritance | Enzymes | Pyrimidines | Biological products | DNA | Nucleotides
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6. Full Text Nucleobases as supramolecular motifs
by Sivakova, Sona and Rowan, Stuart J
Chemical Society Reviews, ISSN 0306-0012, 01/2005, Volume 34, Issue 1, pp. 9 - 21
The five main natural nucleobases adenine, cytosine, guanine, thymine and uracil are involved in the self-assembly of one of nature's most interesting and... 
WATSON-CRICK | RECOGNITION | SYNTHETIC RECEPTORS | ARTIFICIAL ION CHANNELS | NUCLEOTIDE BASES | GUANINE | CG BASE-PAIRS | DERIVATIVES | CHEMISTRY, MULTIDISCIPLINARY | PHOTOINDUCED ENERGY-TRANSFER | PSEUDO-BLOCK COPOLYMERS | Thymine - chemistry | Zinc Fingers | Zinc - metabolism | DNA - metabolism | Cytosine - chemistry | RNA - chemistry | Adenine - chemistry | Pyrimidines - chemistry | DNA - chemistry | Purines - chemistry | Guanine - chemistry | Nucleic Acid Conformation | Uracil - chemistry | RNA - metabolism
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7. Full Text Nucleic acid base analog FRET-pair facilitating detailed structural measurements in nucleic acid containing systems
by Börjesson, Karl and Preus, Søren and El-Sagheer, Afaf H and Brown, Tom and Albinsson, Bo and Wilhelmsson, L. Marcus
Journal of the American Chemical Society, ISSN 0002-7863, 04/2009, Volume 131, Issue 12, pp. 4288 - 4293
We present the first nucleobase analog fluorescence resonance energy transfer (FRET)-pair. The pair consists of tC degrees, 1,3-diaza-2-oxophenoxazine, as an... 
RESONANCE ENERGY-TRANSFER | DOUBLE-STRANDED DNA | CHEMISTRY, MULTIDISCIPLINARY | DEPENDENCE | TC | Models, Theoretical | Cytosine - analogs & derivatives | Oligonucleotides - chemistry | Temperature | Models, Chemical | Nitro Compounds - chemistry | Cytosine - chemistry | DNA - chemistry | Nucleic Acids - chemistry | Phenothiazines - chemistry | Photochemistry - methods | Spectrophotometry, Ultraviolet - methods | Fluorescence Resonance Energy Transfer - methods | Oxazines - chemistry | Nucleic Acid Conformation | Energy transformation | Evaluation | Analysis | Optical properties | Fluorescence | Nucleic acids | Chemical properties | Structure | Thiazides | Analytical Chemistry | Fysikalisk kemi | Organisk kemi | Analytisk kemi | Physical Chemistry | Organic Chemistry
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8. Full Text Combinatorial photothermal and immuno cancer therapy using chitosan-coated hollow copper sulfide nanoparticles
by Guo, Liangran and Yan, Daisy D and Yang, Dongfang and Li, Yajuan and Wang, Xiaodong and Zalewski, Olivia and Yan, Bingfang and Lu, Wei
ACS Nano, ISSN 1936-0851, 06/2014, Volume 8, Issue 6, pp. 5670 - 5681
Near-infrared light-responsive inorganic nanoparticles have been shown to enhance the efficacy of cancer photothermal ablation therapy. However, current... 
cytosine-guanine | photothermal | cancer | hollow CuS nanoparticle | immunotherapy | CELLS | IN-VIVO DELIVERY | GOLD NANOCAGES | MATERIALS SCIENCE, MULTIDISCIPLINARY | TLR9 AGONISTS | CHEMISTRY, PHYSICAL | NANOSCIENCE & NANOTECHNOLOGY | CPG-OLIGODEOXYNUCLEOTIDE | LASER THERAPY | CHEMISTRY, MULTIDISCIPLINARY | CARBON NANOTUBES | OLIGONUCLEOTIDES | ABLATION | Microscopy, Electron, Transmission | Oligonucleotides - chemistry | Immunotherapy - methods | Cytokines - metabolism | Nanotechnology - methods | Metal Nanoparticles - chemistry | Sulfides - chemistry | Antigens, Neoplasm - chemistry | Neoplasms - therapy | Phototherapy - methods | Animals | Chitosan - chemistry | Copper - chemistry | Infrared Rays | Lasers | Neoplasms - immunology | Light | CpG Islands | Female | Mice | Mice, Inbred BALB C | Hyperthermia, Induced - methods | Neoplasms - pathology | Therapy | LASERS | PARTICLES | SULFIDES | Nanostructure | Nanoparticles | MICROSTRUCTURES | COPPER SULFIDE | COATINGS | Excitation | Tumors | Cancer
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9. Full Text Prebiotic Chemistry of Pluto
by Cruikshank, D.P and Materese, C.K and Pendleton, Y.J and Boston, P.J and Grundy, W.M and Schmitt, B and Lisse, C.M and Runyon, K.D and Keane, J.T and Beyer, R.A and Summers, M.E and Scipioni, F and Stern, S.A and Dalle Ore, C.M and Olkin, C.B and Young, L.A and Ennico, K and Weaver, H.A and Bray, V.J
Astrobiology, ISSN 1531-1074, 07/2019, Volume 19, Issue 7, pp. 831 - 848
We present the case for the presence of complex organic molecules, such as amino acids and nucleobases, formed by abiotic processes on the surface and in... 
Research Articles | OPTICAL-CONSTANTS | Ice | Nucleobase | CHARGED-PARTICLE IRRADIATION | ION IRRADIATION | Pluto | ATMOSPHERE | Tholin | GEOSCIENCES, MULTIDISCIPLINARY | AMINO-ACIDS | ULTRAVIOLET PHOTOIRRADIATION | ASTRONOMY & ASTROPHYSICS | ORGANIC-COMPOUNDS | INTERSTELLAR | BIOLOGY | SURFACE | HYDROGEN-CYANIDE | Planetary atmospheres | Personal communication | Solar corona | Organic materials | Laboratories | Materials | Amino acids | Tectonics | Guanine | Colour | Ice formation | Molecules | Purines | Pyrimidines | Photolysis | Radiolysis | Cytosine | Solar system | Communication | Solid phases | Celestial bodies | Macromolecules | Thymine | Adenine | Regions | Solar nebula (solar system evolution) | Aliphatic compounds | Organic solids | Aromatics | Ammonia | Organic chemistry | Pluto (dwarf planet) | Astronomical models | Kuiper belt | Uracil
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10. Full Text Combining the GW formalism with the polarizable continuum model: A state-specific non-equilibrium approach
by Duchemin, Ivan and Jacquemin, Denis and Blase, Xavier
The Journal of Chemical Physics, ISSN 0021-9606, 04/2016, Volume 144, Issue 16, p. 164106
We have implemented the polarizable continuum model within the framework of the many-body Green’s function GW formalism for the calculation of electron... 
IONIZATION ENERGIES | BENCHMARKING | GREENS-FUNCTION | COMPLEXES | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | IMPLEMENTATION | CHEMISTRY, PHYSICAL | BASIS-SETS | POTENTIALS | VOLUME POLARIZATION | ELECTRONIC EXCITATIONS | PHOTOELECTRON-SPECTROSCOPY | Thermodynamics | Thymine - chemistry | Quantum Theory | Models, Chemical | Solutions | Cytosine - chemistry | Adenine - chemistry | Uracil - chemistry | Electrons | Polarization | Organic chemistry | Computational chemistry | Optoelectronics | Solvation | Energy levels | Continuum modeling | Density functional theory | Mathematical models | Formalism | or physical chemistry | Chemical Sciences | Theoretical and | INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY | BETHE-SALPETER EQUATION | DENSITY FUNCTIONAL METHOD | MANY-BODY PROBLEM | GROUND STATES
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11. Full Text Bond breaks of nucleotides by dissociative electron transfer of nonequilibrium prehydrated electrons: A new molecular mechanism for reductive DNA damage
by Wang, Chun-Rong and Nguyen, Jenny and Lu, Qing-Bin
Journal of the American Chemical Society, ISSN 0002-7863, 08/2009, Volume 131, Issue 32, pp. 11320 - 11322
DNA damage is a central mechanism in the pathogenesis and treatment of human diseases, notably cancer. Little is known about reductive DNA damage in causing... 
LOW-ENERGY ELECTRONS | ATTACHMENT | LIQUID WATER | H2O ICE | FEMTOSECOND | CANCER-RESEARCH | MAMMALIAN-CELLS | RADIATION | CHEMISTRY, MULTIDISCIPLINARY | STRAND BREAKS | AQUEOUS-SOLUTION | DNA - chemistry | Oxidation-Reduction | Water - chemistry | Guanine - chemistry | DNA Damage | Cytosine - chemistry | Spectrum Analysis | Adenine - chemistry | Thymidine - chemistry | Electrons | Nucleotides - chemistry | Radiation, Ionizing | DNA damage | Analysis | Nucleotides | Chemical properties | Electron transport | Hydration (Chemistry) | Structure
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12. Full Text Understanding the interaction of DNA-RNA nucleobases with different ZnO nanomaterials
by Saha, Supriya and Sarkar, Pranab
Physical Chemistry Chemical Physics, ISSN 1463-9076, 08/2014, Volume 16, Issue 29, pp. 15355 - 15366
Due to the potential application of different nanostructure materials in biomedical nanotechnologies, understanding the interaction between the inorganic... 
CORE-SHELL NANOPARTICLES | IN-VITRO | BASE-PAIRS | LIPID-BILAYERS | GOLD CLUSTERS | SERUM-ALBUMIN | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | DENSITY-FUNCTIONAL-THEORY | ZINC-OXIDE NANOPARTICLES | CHEMISTRY, PHYSICAL | BIOMEDICAL APPLICATIONS | QUANTUM DOTS | Thymine - chemistry | Models, Chemical | Models, Molecular | Cytosine - chemistry | RNA - chemistry | Adenine - chemistry | Nanotubes - chemistry | Thermodynamics | DNA - chemistry | Quantum Theory | Quantum Dots | Zinc Oxide - chemistry | Surface Properties | Nanostructures - chemistry | Guanine - chemistry | Binding Sites | Uracil - chemistry | Index Medicus
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13. Full Text The origin of efficient triplet state population in sulfur-substituted nucleobases
by Mai, Sebastian and Pollum, Marvin and Martínez-Fernández, Lara and Dunn, Nicholas and Marquetand, Philipp and Corral, Inés and Crespo-Hernández, Carlos E and González, Leticia
Nature Communications, ISSN 2041-1723, 10/2016, Volume 7, Issue 1, p. 13077
Elucidating the photophysical mechanisms in sulfur-substituted nucleobases (thiobases) is essential for designing prospective drugs for photo-and... 
RELAXATION DYNAMICS | MOLECULAR-DYNAMICS | EXCITED-STATE | CHEMOTHERAPEUTIC-AGENTS | PHOTODYNAMIC THERAPY | NUCLEOSIDE ANALOGS | INTERSYSTEM CROSSING PATHWAYS | MULTIDISCIPLINARY SCIENCES | AB-INITIO | INTERNAL-CONVERSION | FIELD DISSOCIATIVE IONIZATION | Cytosine - analogs & derivatives | Thymine | Antineoplastic Agents - chemistry | Cytosine - chemistry | RNA - chemistry | Photochemotherapy | Molecular Dynamics Simulation | Phototherapy | Thermodynamics | DNA - chemistry | Quantum Theory | Singlet Oxygen - chemistry | Drug Design | Spectrophotometry | Hydrogen-Ion Concentration | Sulfur - chemistry | Potential energy | Femtosecond | Structural members | Quantum chemistry | Ribonucleic acid--RNA | Substitutes | Organic chemistry | Triplet state | Dynamic tests | Unity | Sulfur | Deoxyribonucleic acid--DNA | Atomic energy levels
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14. Full Text Binding of DNA nucleobases and nucleosides with graphene
by Varghese, Neenu and Mogera, Umesha and Govindaraj, Achutharao and Das, Anindya and Maiti, Prabal K and Sood, Ajay K and Rao, C.N.R
ChemPhysChem, ISSN 1439-4235, 01/2009, Volume 10, Issue 1, pp. 206 - 210
Interaction of two different samples of graphene with DNA nucleobases and nucleosides is investigated by isothermal titration calorimetry. The relative... 
Nucleosides | Isothermal titration calorimetry | Graphene | Nanotubes | Nucleobases | nanotubes | nucleosides | GENERALIZED BORN MODEL | BASES | isothermal titration calorimetry | nucleobases | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | ADSORPTION | graphene | CARBON NANOTUBES | Thermodynamics | Thymine - chemistry | Nucleosides - chemistry | Guanine - chemistry | Graphite - chemistry | Cytosine - chemistry | Adenine - chemistry
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