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dead-end elimination (220) 220
algorithms (121) 121
protein conformation (113) 113
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proteins - chemistry (110) 110
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mutation (16) 16
protein structure, tertiary (16) 16
side-chain prediction (16) 16
structure-activity relationship (16) 16
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statistics & probability (15) 15
dead‐end elimination (14) 14
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Journal of Computational Chemistry, ISSN 0192-8651, 10/2007, Volume 28, Issue 13, pp. 2122 - 2129
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 08/2000, Volume 21, Issue 11, pp. 999 - 1009
Dead‐end elimination (DEE) is a powerful theorem for selecting optimal protein side‐chain orientations from a large set of discrete conformations. The present... 
dead‐end elimination | side‐chain placement | conformational splitting | global minimum energy conformation | protein design | Dead-end elimination | Global minimum energy conformation | Conformational splitting | Protein design | Side-chain placement
Journal Article
JOURNAL OF COMPUTATIONAL CHEMISTRY, ISSN 0192-8651, 08/2000, Volume 21, Issue 11, pp. 999 - 1009
Dead-end elimination (DEE) is a powerful theorem for selecting optimal protein side-chain orientations from a large set of discrete conformations. The present... 
side-chain placement | DESIGN | global minimum energy conformation | THEOREM | PROTEIN SIDE-CHAINS | dead-end elimination | conformational splitting | protein design | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
Proteins: Structure, Function and Genetics, ISSN 0887-3585, 11/1998, Volume 33, Issue 2, pp. 227 - 239
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2013, Volume 29, Issue 17, pp. 2129 - 2136
Journal Article
JOURNAL OF COMPUTATIONAL CHEMISTRY, ISSN 0192-8651, 10/1998, Volume 19, Issue 13, pp. 1505 - 1514
Recent advances in protein design have demonstrated the effectiveness of optimization algorithms based on the dead-end elimination theorem. The algorithms... 
SIDE-CHAINS | combinatorial optimization | rotamers | ROTAMER LIBRARY | dead-end elimination | protein design | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2012, Volume 899, pp. 127 - 144
Conference Proceeding
Current Opinion in Chemical Biology, ISSN 1367-5931, 12/2018, Volume 47, pp. 67 - 76
The design of tailor-made enzymes is a major goal in biochemical research that can result in wide-range applications and will lead to a better understanding of... 
COMPUTATIONAL PROTEIN DESIGN | LIGAND-BINDING | BIOPHYSICS | STABILITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONFORMATIONAL SPACE | ALGORITHM | RETRO-ALDOLASE | ARTIFICIAL METALLOENZYMES | OPTIMIZATION | DEAD-END ELIMINATION | DIRECTED EVOLUTION | Enzymes
Journal Article
by Xu, G and Ma, TQ and Du, JQ and Wang, QH and Ma, JP
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, ISSN 1549-9618, 09/2019, Volume 15, Issue 9, pp. 5154 - 5160
Side-chain modeling plays a critical role in protein structure prediction. However, in many current methods, balancing the speed and accuracy is still... 
DESIGN | PLACEMENT | ALGORITHM | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | OPTIMIZATION | DEAD-END ELIMINATION | PROTEINS | DEPENDENT ROTAMER LIBRARY | STRUCTURE PREDICTION | CONFORMATIONS | Proteins | Chains | Modelling | Model accuracy
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1529, pp. 265 - 277
Journal Article