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1. Full Text SCANPY: Large-scale single-cell gene expression data analysis
by Wolf, F.Alexander and Angerer, Philipp and Theis, Fabian J
Genome Biology, ISSN 1474-7596, 02/2018, Volume 19, Issue 1, pp. 15 - 15
Single-cell transcriptomics | Visualization | Graph analysis | Scalability | Machine learning | Differential expression testing | Clustering | Trajectory inference | Bioinformatics | Pseudotemporal ordering | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Datasets | Annotations | Genomics | Dimensional analysis | Data processing | Principal components analysis | Gene expression | Graph representations | Index Medicus
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2. Full Text Multicenter Clinical Experience With the Afirma Gene Expression Classifier
by Alexander, Erik K and Schorr, Melanie and Klopper, Joshua and Kim, Caroline and Sipos, Jennifer and Nabhan, Fadi and Parker, Charles and Steward, David L and Mandel, Susan J and Haugen, Bryan R
The journal of clinical endocrinology and metabolism, ISSN 0021-972X, 01/2014, Volume 99, Issue 1, pp. 119 - 125
Life Sciences & Biomedicine | Endocrinology & Metabolism | Science & Technology | Fundamental and applied biological sciences. Psychology | Feeding. Feeding behavior | Vertebrates: anatomy and physiology, studies on body, several organs or systems | Vertebrates: endocrinology | Biological and medical sciences | Endocrinopathies | Medical sciences | Thyroid Nodule - genetics | Diagnosis, Differential | Diagnostic Techniques, Endocrine | Humans | Middle Aged | Gene Expression Regulation, Neoplastic | Thyroid Nodule - diagnosis | Gene Expression Profiling - methods | Male | Biopsy, Fine-Needle | Female | Retrospective Studies | Transcriptome - physiology | Index Medicus | Abridged Index Medicus
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3. Full Text Molecular Diagnosis of Eosinophilic Esophagitis by Gene Expression Profiling
by Wen, Ting and Stucke, Emily M and Grotjan, Tommie M and Kemme, Katherine A and Abonia, J. Pablo and Putnam, Philip E and Franciosi, James P and Garza, Jose M and Kaul, Ajay and King, Eileen C and Collins, Margaret H and Kushner, Jonathan P and Rothenberg, Marc E
Gastroenterology (New York, N.Y. 1943), ISSN 0016-5085, 2013, Volume 145, Issue 6, pp. 1289 - 1299
Gastroenterology and Hepatology | GERD | Nonerosive Reflux Disease | Signature | EoE Transcriptome | EoE | Diagnostic Panel | Fluidic Card | Eosinophil | Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Diagnosis, Differential | Prognosis | Age Factors | Eosinophilic Esophagitis - diagnosis | Humans | Eosinophilic Esophagitis - pathology | Esophagitis, Peptic - diagnosis | Gene Expression Profiling - methods | Transcriptome - genetics | Case-Control Studies | Esophagus - pathology | Esophagitis, Peptic - pathology | Biopsy | Sensitivity and Specificity | Esophagitis, Peptic - genetics | Pathology, Molecular - methods | Adult | Child | Eosinophilic Esophagitis - genetics | Cluster Analysis | Esophagitis | Medical colleges | Diagnosis | Gene expression | Index Medicus | Abridged Index Medicus | signature | fluidic card | transcriptome | EoE transcriptome | genomics | diagnostic panel | eosinophil | NERD | esophagus
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4. Full Text Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA‐seq experiments
by Vijay, Nagarjun and Poelstra, Jelmer W and Künstner, Axel and Wolf, Jochen B. W
Molecular ecology, ISSN 0962-1083, 02/2013, Volume 22, Issue 3, pp. 620 - 634
systems biology | differential gene expression | RNA‐seq | simulation | bioinformatics | transcriptome assembly | comparative genomics | RNA-seq | Biochemistry & Molecular Biology | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Sequence Analysis, RNA - methods | Computational Biology - methods | Animals | Alternative Splicing | Computer Simulation | Humans | Molecular Sequence Annotation | Transcriptome | Finches - genetics | Software | High-Throughput Nucleotide Sequencing - methods | Anopheles | Gene expression | Genes | Analysis | Genomics | Ribonucleic acid--RNA | Index Medicus
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5. Full Text Gene expression profile changes induced by acute toxicity of [C16mim]Cl in loach (Paramisgurnus dabryanus)
by Nan, Ping and Yan, Shuaiguo and Wang, Yaxing and Du, Qiyan and Chang, Zhongjie
Environmental toxicology, ISSN 1520-4081, 02/2017, Volume 32, Issue 2, pp. 404 - 416
loach (Paramisgurnus dabryanus) | differential gene expression profile | [C16mim]Cl | suppression subtraction hybridization | mim]Cl | Physical Sciences | Toxicology | Life Sciences & Biomedicine | Water Resources | Environmental Sciences & Ecology | Science & Technology | Environmental Sciences | Cypriniformes - genetics | Gene Expression - drug effects | Heat-Shock Proteins - drug effects | DNA, Complementary - genetics | Oxidative Stress - genetics | Genes, cdc - drug effects | Gene Expression Profiling | RNA - genetics | Heat-Shock Proteins - genetics | RNA - biosynthesis | Animals | Ionic Liquids - toxicity | Biomarkers | DNA, Complementary - biosynthesis | Imidazoles - toxicity | DNA Damage | Oxidative Stress - drug effects | Genetic research | Gene expression | Analysis | Genes | Index Medicus
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6. Full Text Gene-expression profiling and array-based CGH classify CD4 +CD56+ hematodermic neoplasm and cutaneous myelomonocytic leukemia as distinct disease entities
by Dijkman, Remco and Van Doorn, Remco and Szuhai, Károly and Willemze, Rein and Vermeer, Maarten H and Tensen, Cornelis P
Blood, ISSN 0006-4971, 02/2007, Volume 109, Issue 4, pp. 1720 - 1727
Life Sciences & Biomedicine | Hematology | Science & Technology | Hematologic and hematopoietic diseases | Biological and medical sciences | Medical sciences | Leukemia, Myelomonocytic, Chronic - diagnosis | Diagnosis, Differential | Nucleic Acid Hybridization | CD56 Antigen - analysis | Humans | Middle Aged | Child, Preschool | Immunophenotyping | Male | Gene Expression Profiling | Biomarkers, Tumor | Skin Neoplasms - classification | CD4 Antigens - analysis | Skin Neoplasms - diagnosis | Chromosome Aberrations | Aged, 80 and over | Female | Aged | Leukemia, Myelomonocytic, Chronic - classification | Genomics - methods | Child | Index Medicus | Abridged Index Medicus
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7. Full Text Benchmarking Sepsis Gene Expression Diagnostics Using Public Data
by Sweeney, Timothy E and Khatri, Purvesh
Critical care medicine, ISSN 0090-3493, 09/2016, Volume 45, Issue 1, pp. 1 - 10
diagnosis | microarray | gene expression | sepsis | Life Sciences & Biomedicine | Critical Care Medicine | General & Internal Medicine | Science & Technology | Diagnosis, Differential | Gene Expression | Datasets as Topic | Humans | Sensitivity and Specificity | Sepsis - diagnosis | Benchmarking | Systemic Inflammatory Response Syndrome - diagnosis | Case-Control Studies | Sepsis - genetics | Index Medicus | Abridged Index Medicus | Sepsis
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8. Full Text Transcriptome profiling and cataloging differential gene expression in floral buds of fertile and sterile lines of cotton (Gossypium hirsutum L.)
by Hamid, Rasmieh and Tomar, Rukam S and Marashi, Hassan and Shafaroudi, Saeid Malekzadeh and Golakiya, Balaji A and Mohsenpour, Motahhareh
Gene, ISSN 0378-1119, 06/2018, Volume 660, pp. 80 - 91
Genic SSR | Gossypium hirsutum | Cytoplasmic Genic Male Sterility (CGMS) | Differential gene expression | Transcriptome | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Proteins | Quantitative genetics | Biotechnology | Anopheles | RNA | Genes | Genetic research | Gene expression | Index Medicus
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9. Full Text Discrete distributional differential expression (D3E) - a tool for gene expression analysis of single-cell RNA-seq data
by Delmans, Mihails and Hemberg, Martin
BMC bioinformatics, ISSN 1471-2105, 02/2016, Volume 17, Issue 1, pp. 110 - 110
Transcriptional bursting model | Stochastic gene expression | Software | Differential gene expression | Single-cell RNA-seq | Sequence Analysis, RNA - methods | Algorithms | Single-Cell Analysis - methods | Humans | Statistical Distributions | Gene Expression Profiling | High-Throughput Nucleotide Sequencing - methods | RNA - genetics | RNA sequencing | Gene expression | Research | Index Medicus
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10. Full Text Hepatic gene expression profiles differentiate presymptomatic patients with mild versus severe nonalcoholic fatty liver disease
by Moylan, Cynthia A and Pang, Herbert and Dellinger, Andrew and Suzuki, Ayako and Garrett, Melanie E and Guy, Cynthia D and Murphy, Susan K and Ashley‐Koch, Allison E and Choi, Steve S and Michelotti, Gregory A and Hampton, Daniel D and Chen, Yuping and Tillmann, Hans L and Hauser, Michael A and Abdelmalek, Manal F and Diehl, Anna Mae
Hepatology (Baltimore, Md.), ISSN 0270-9139, 02/2014, Volume 59, Issue 2, pp. 471 - 482
Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Fatty Liver - genetics | Severity of Illness Index | Diagnosis, Differential | Liver - pathology | Fatty Liver - metabolism | Prognosis | Tissue Array Analysis | Humans | Liver - metabolism | Middle Aged | Risk Factors | Transcriptome | Male | Asymptomatic Diseases | Liver Regeneration - genetics | Fatty Liver - diagnosis | Biopsy | Liver Cirrhosis - metabolism | Non-alcoholic Fatty Liver Disease | Liver Cirrhosis - pathology | Adult | Female | Liver Cirrhosis - genetics | Metabolism - genetics | Liver diseases | Gene expression | Liver cirrhosis | Mortality | Hepatology | Index Medicus
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