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Analytical Biochemistry, ISSN 0003-2697, 01/2020, Volume 588, p. 113469
Nucleosomes are a crucial platform for the recruitment and assembly of protein complexes that process the DNA. Mechanistic and structural studies typically... 
DNA synthesis | Ramified RCA | Transcription factor binding | Nucleosome
Journal Article
Biophysical Chemistry, ISSN 0301-4622, 01/2020, Volume 256, p. 106270
DNA strands can be designed to assemble into stable three-dimensional structures, based on Watson-Crick base pairing rules. The simplest of these is the DNA... 
DNA tetrahedron | Minor groove ligand | Nanostructure | Hoechst 33258
Journal Article
Microbiological Research, ISSN 0944-5013, 01/2020, Volume 230, p. 126343
Identifying the direct target genes of response regulators (RRs) of a bacterial two-component system (TCS) is critical to understand the roles of TCS in... 
Response regulator | Two-component system | Transcriptional regulation | Actinobacillus pleuropneumoniae | NarP | DNA-affinity-purified sequencing
Journal Article
SCIENTIFIC REPORTS, ISSN 2045-2322, 04/2019, Volume 9, Issue 1, pp. 6146 - 12
Proteins that act as global transcriptional regulators play key roles in bacterial adaptation to new niches. These proteins recognize multiple DNA sites across... 
GENE | P-TYPE ATPASE | MGA | MULTIDISCIPLINARY SCIENCES | CALCIUM | PMR1 | VIRULENCE | IDENTIFICATION | BINDING | EXPRESSION | DOMAINS | Transcription activation | Queuosine | Calcium channels (P-type) | Homeostasis | Genomes | Protein transport | Gene expression | Promoters | Binding sites | Deoxyribonucleic acid--DNA | Niches | Calcium homeostasis
Journal Article
BMC Cancer, ISSN 1471-2407, 05/2019, Volume 19, Issue 1, p. 434
BackgroundChromosomal rearrangements are the typical phenomena in cancer genomes causing gene disruptions and fusions, corruption of regulatory elements,... 
Genome rearrangements | Breakpoints | Cancer genomes | Logistic regression | Cancer mutations | Non-B motifs | DNA secondary structures | Genome instability | Random forest | Machine learning models | Stem-loops | Quadruplexes | TRANSLOCATION | CHROMATIN ORGANIZATION | ONCOLOGY | DNA | Genes | Genomics | Machine learning | Genomes | Genetic aspects | Health aspects | Prostate cancer | Skin cancer | Cancer | Research | Analysis
Journal Article
SCIENTIFIC REPORTS, ISSN 2045-2322, 09/2019, Volume 9, Issue 1, pp. 13136 - 15
Carotenoid production in some non-phototropic bacteria occurs in a light-dependent manner to protect cells from photo-oxidants. Knowledge regarding the... 
MYCOBACTERIUM | CAROTENOGENESIS | GENE-CLUSTER | BIOSYNTHESIS | MULTIDISCIPLINARY SCIENCES | SEQUENCE | PIGMENT | TRANSCRIPTIONAL REGULATION | EXPRESSION | FAMILY | Carotenoids | Phototrophic bacteria | Oxidants | Transcription | Light | Amino acids | Bacteria | Genomes | Biosynthesis | RNA polymerase | DNA-directed RNA polymerase
Journal Article
by Zhu, Q and Liu, N and Orkin, SH and Yuan, GC
GENOME BIOLOGY, ISSN 1474-760X, 09/2019, Volume 20, Issue 1, pp. 192 - 12
We introduce CUT&RUNTools as a flexible, general pipeline for facilitating the identification of chromatin-associated protein binding and genomic footprinting... 
ELEMENTS | CHROMATIN | GENE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIAS | TRANSCRIPTION | LMO2 | GENETICS & HEREDITY | IDENTIFICATION | BINDING | Proteins | Visualization | Footprinting | Chromatin | Genomes | Endonuclease | Gene mapping | Binding sites | Deoxyribonucleic acid--DNA | Cancer
Journal Article
Journal Article
Journal of Structural Biology, ISSN 1047-8477, 12/2019, Volume 208, Issue 3
ArlRS is an essential two-component system in that regulates the transcription of virulence factors and participate in numerous pathogenic and symbiotic... 
ArlR | Phosphorylation | TCS | DNA binding property | Crystal structure
Journal Article
Epigenetics & chromatin, ISSN 1756-8935, 06/2019, Volume 12, Issue 1, pp. 30 - 12
Journal Article
Genome Biology, ISSN 1474-7596, 02/2019, Volume 20, Issue 1, pp. 45 - 21
Journal Article
by Cui, XJ and Chen, H and Zhang, Q and Xu, M and Yuan, G and Zhou, J
SCIENTIFIC REPORTS, ISSN 2045-2322, 03/2019, Volume 9, Issue 1, pp. 3966 - 12
G-quadruplexes in oncogene promoters provide putative targets for transcriptional regulation. The structure of a putative G-quadruplex sequence (S1:... 
TELOMERIC G-QUADRUPLEX | NMR | ONCOGENE | CIRCULAR-DICHROISM | INHIBITION | DNA G-QUADRUPLEX | DIMERIC G-QUADRUPLEX | MULTIDISCIPLINARY SCIENCES | SEQUENCE | CANCER | REGION | Polymerase chain reaction | Spectroscopy | Nuclear magnetic resonance--NMR | Transcription | Spectrum analysis | Gene regulation | Exploration | Tetrads | ErbB-2 protein | Western blotting
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 2797 - 12
Journal Article