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1. Full Text RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex
by Hale, Caryn R and Zhao, Peng and Olson, Sara and Duff, Michael O and Graveley, Brenton R and Wells, Lance and Terns, Michael P and Terns, Rebecca M
Cell, ISSN 0092-8674, 11/2009, Volume 139, Issue 5, pp. 945 - 956
Compelling evidence indicates that the CRISPR-Cas system protects prokaryotes from viruses and other potential genome invaders. This adaptive prokaryotic... 
RNA | MICROBIO | SYSTEM | DEFENSE | ELEMENTS | NONCODING RNAS | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROVIDES ACQUIRED-RESISTANCE | INTERFERENCE | IDENTIFICATION | REPEATS | PROKARYOTES | CELL BIOLOGY | Archaeal Proteins - metabolism | Pyrococcus furiosus - virology | RNA, Archaeal - immunology | Pyrococcus furiosus - metabolism | RNA, Guide - genetics | RNA, Guide - metabolism | RNA, Archaeal - chemistry | Pyrococcus furiosus - immunology | Pyrococcus furiosus - genetics | RNA Interference | RNA, Guide - chemistry | Base Sequence | Archaeal Proteins - immunology | RNA, Archaeal - metabolism | RNA, Viral - immunology | RNA, Guide - immunology | RNA, Archaeal - genetics | Proteins | Developmental biology | Stem cells | Genes | Genomics | Genomes | Nucleotide sequence | Cellular apoptosis susceptibility protein | Prokaryotes | RNA-mediated interference | Immune system
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2. Full Text RNA-guided genetic silencing systems in bacteria and archaea
by Wiedenheft, Blake and Sternberg, Samuel H and Doudna, Jennifer A
Nature, ISSN 0028-0836, 02/2012, Volume 482, Issue 7385, pp. 331 - 338
Clustered regularly interspaced short palindromic repeat (CRISPR) are essential components of nucleic-acid-based adaptive immune systems that are widespread in... 
IMMUNE-SYSTEM | ANTIVIRAL DEFENSE | STRUCTURAL BASIS | CRISPR RNA | DNA | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | TARGET RECOGNITION | PROVIDES ACQUIRED-RESISTANCE | IDENTIFICATION | REPEATS CRISPRS | RNA, Archaeal - chemistry | Gene Silencing | Models, Molecular | RNA, Archaeal - biosynthesis | Bacteria - genetics | RNA Interference | RNA, Bacterial - biosynthesis | RNA, Bacterial - chemistry | RNA, Archaeal - metabolism | RNA, Bacterial - genetics | Archaea - genetics | Gene Expression Regulation, Bacterial | RNA, Archaeal - genetics | RNA, Bacterial - metabolism | Bacteria | Genomes | Genetic engineering | Forensic medicine | Microbiology
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3. Full Text DoriC 5.0: An updated database of oriC regions in both bacterial and archaeal genomes
by Gao, Feng and Luo, Hao and Zhang, Chun-Ting
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D90 - D93
Replication of chromosomes is one of the central events in the cell cycle. Chromosome replication begins at specific sites, called origins of replication... 
ELEMENT | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | MACHINERY | GENES | CHROMOSOME-REPLICATION | CYANOTHECE 51142 | IDENTIFICATION | SP STRAIN NRC-1 | MULTIPLE REPLICATION ORIGINS | LAGGING STRANDS | Genome, Bacterial | DNA, Archaeal - chemistry | Replication Origin | Genome, Archaeal | DNA, Bacterial - chemistry | Internet | Databases, Nucleic Acid
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4. Full Text Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity
by Zhang, Jing and Rouillon, Christophe and Kerou, Melina and Reeks, Judith and Brugger, Kim and Graham, Shirley and Reimann, Julia and Cannone, Giuseppe and Liu, Huanting and Albers, Sonja-Verena and Naismith, James H and Spagnolo, Laura and White, Malcolm F
Molecular Cell, ISSN 1097-2765, 02/2012, Volume 45, Issue 3, pp. 303 - 313
The prokaryotic lusters of egularly nter paced alindromic epeats (CRISPR) system utilizes genomically encoded CRISPR RNA (crRNA), derived from invading viruses... 
DYNAMIC PROPERTIES | STREPTOCOCCUS-THERMOPHILUS | DEFENSE | EVOLUTION | RNA | RECOGNITION | HYPERTHERMOPHILIC ARCHAEON | BIOCHEMISTRY & MOLECULAR BIOLOGY | SULFOLOBUS-SOLFATARICUS | CAS SYSTEMS | INTERFERENCE | CELL BIOLOGY | Protein Structure, Tertiary | Archaeal Viruses - immunology | Archaeal Proteins - isolation & purification | Sulfolobus solfataricus - immunology | Macromolecular Substances - isolation & purification | Sulfolobus solfataricus - genetics | RNA, Archaeal - chemistry | Archaeal Proteins - chemistry | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | RNA Cleavage | RNA, Archaeal - isolation & purification | Microscopy, Electron | Macromolecular Substances - chemistry | Protein Subunits - isolation & purification | Base Sequence | Protein Structure, Quaternary | Sulfolobus solfataricus - metabolism | Sulfolobus solfataricus - virology | Protein Subunits - chemistry | Nucleic Acid Conformation | RNA, Archaeal - genetics | Inverted Repeat Sequences | Proteins | Antiviral agents | Structure | Health aspects | Crystals | Infection | Cellular apoptosis susceptibility protein | DNA | Ribonucleoproteins | Immunity | Crystal structure
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5. Full Text An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference
by Peng, Wenfang and Feng, Mingxia and Feng, Xu and Xiang Liang, Yun and She, Qunxin
Nucleic Acids Research, ISSN 0305-1048, 10/2014, Volume 43, Issue 1, pp. 406 - 417
CRISPR-Cas systems provide a small RNA-based mechanism to defend against invasive genetic elements in archaea and bacteria. To investigate the in vivo... 
SULFOLOBUS-ISLANDICUS | ANTIVIRAL DEFENSE | HYPERTHERMOPHILIC ARCHAEON | SILENCING COMPLEX | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEED SEQUENCE | CAS SYSTEMS | VIRUS DEFENSE | HALOFERAX-VOLCANII | ADAPTIVE BACTERIAL IMMUNITY | I-B | Sulfolobus - genetics | DNA, Archaeal - chemistry | Nucleotide Motifs | RNA Interference | RNA, Archaeal - chemistry | CRISPR-Cas Systems | Clustered Regularly Interspaced Short Palindromic Repeats | Plasmids - genetics | RNA, Archaeal - metabolism | RNA Cleavage | Molecular Biology
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6. Full Text Polyphasic Analyses of Methanogenic Archaeal Communities in Agricultural Biogas Plants
by E. Nettmann and I. Bergmann and S. Pramschüfer and K. Mundt and V. Plogsties and C. Herrmann and M. Klocke
Applied and Environmental Microbiology, ISSN 0099-2240, 04/2010, Volume 76, Issue 8, pp. 2540 - 2548
ERRATUM ( vol. 77 , p. 394 ) Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg... 
16S RDNA | REACTOR SYSTEMS | AMMONIA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | THERMOPHILIC ANAEROBIC-DIGESTION | MICROBIAL DIVERSITY | QUANTIFICATION | BACTERIUM | MICROBIOLOGY | SYNTROPHIC ACETATE OXIDATION | METHANE PRODUCTION | TARGETED OLIGONUCLEOTIDE PROBES | DNA, Archaeal - genetics | DNA, Archaeal - chemistry | Methane - metabolism | Ammonia - metabolism | Molecular Sequence Data | In Situ Hybridization, Fluorescence | Archaea - classification | DNA, Ribosomal - chemistry | Sequence Analysis, DNA | Sequence Homology, Nucleic Acid | Archaea - metabolism | Bioreactors - microbiology | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Genes, rRNA | RNA, Archaeal - genetics | Biofuels - microbiology | Hydrogen - metabolism | DNA, Ribosomal - genetics | Methane | Physiological aspects | Environmental aspects | Protection and preservation | Methanobacteriaceae | Biogas | Archaeabacteria | Ammonia | Microbial Ecology
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7. Full Text Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
by Roh, Seong Woon and Kim, Kyoung-Ho and Nam, Young-Do and Chang, Ho-Won and Park, Eun-Jin and Bae, Jin-Woo
The ISME Journal, ISSN 1751-7362, 01/2010, Volume 4, Issue 1, pp. 1 - 16
Little is known about the archaeal diversity of fermented seafood; most of the earlier studies of fermented food have focused on lactic acid bacteria ( LAB) in... 
Microbial diversity | Barcoded pyrosequencing | Fermented food | JEOTGALI SP-NOV | AMMONIA-OXIDIZING ARCHAEA | MICROBIOLOGY | SHRIMP JEOTGAL | fermented food | MICROBIAL COMMUNITY | GRADIENT GEL-ELECTROPHORESIS | HALOPHILIC ARCHAEON | barcoded pyrosequencing | TERRESTRIAL HABITATS | SEQUENCE ALIGNMENT | LACTIC-ACID BACTERIA | ECOLOGY | microbial diversity | 16S RIBOSOMAL-RNA | DNA, Archaeal - genetics | Nucleic Acid Denaturation | Sequence Analysis - methods | DNA, Archaeal - chemistry | Electrophoresis, Polyacrylamide Gel | DNA Primers - genetics | DNA, Bacterial - chemistry | Archaea - isolation & purification | Phylogeny | Biodiversity | Archaea - classification | DNA, Ribosomal - chemistry | DNA Fingerprinting - methods | Polymerase Chain Reaction - methods | Sequence Homology | Bacteria - isolation & purification | DNA, Bacterial - genetics | Seafood - microbiology | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Cluster Analysis | DNA, Ribosomal - genetics
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8. Full Text Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
by Yarza, Pablo and Yilmaz, Pelin and Pruesse, Elmar and Glöckner, Frank Oliver and Ludwig, Wolfgang and Schleifer, Karl-Heinz and Whitman, William B and Euzéby, Jean and Amann, Rudolf and Rosselló-Móra, Ramon
Nature Reviews Microbiology, ISSN 1740-1526, 2014, Volume 12, Issue 9, pp. 635 - 645
Publicly available sequence databases of the small subunit ribosomal RNA gene, also known as 16S rRNA in bacteria and archaea, are growing rapidly, and the... 
PHYLUM | LIVING TREE PROJECT | SUPERPHYLUM | TAXONOMY | ORDER | ORIGIN | MICROBIOLOGY | PROPOSAL | TIME | DNA, Archaeal - genetics | DNA, Archaeal - chemistry | Computational Biology | DNA, Bacterial - chemistry | Phylogeny | Archaea - classification | Bacteria - genetics | DNA, Ribosomal - chemistry | Sequence Analysis, DNA | RNA, Ribosomal, 16S - chemistry | DNA, Bacterial - genetics | Ribotyping | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Databases, Nucleic Acid | DNA, Ribosomal - genetics | Genomic libraries | RNA | Bacteria | Genetic aspects | Management | Archaeabacteria | Identification and classification
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9. Full Text Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples
by Ana C. C. Pires and Daniel F. R. Cleary and Adelaide Almeida and Ângela Cunha and Simone Dealtry and Leda C. S. Mendonça-Hagler and Kornelia Smalla and Newton C. M. Gomes
Applied and Environmental Microbiology, ISSN 0099-2240, 08/2012, Volume 78, Issue 16, pp. 5520 - 5528
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
MICROORGANISMS | ENVIRONMENTS | COMMUNITY | METHANOGENIC ARCHAEA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BUTTERFLY DIVERSITY | ENSO-INDUCED FIRES | HYPERVARIABLE REGIONS | PROKARYOTIC DIVERSITY | MICROBIOLOGY | BACTERIAL | RIBOSOMAL-RNA GENES | DNA, Archaeal - genetics | DNA, Archaeal - chemistry | Molecular Sequence Data | Archaea - isolation & purification | Combretaceae - microbiology | Phylogeny | Biodiversity | Plant Roots - microbiology | Archaea - classification | DNA Barcoding, Taxonomic | DNA, Ribosomal - chemistry | Sequence Analysis, DNA | Sequence Homology, Nucleic Acid | Denaturing Gradient Gel Electrophoresis | Rhizosphere | Rhizophoraceae - microbiology | Brazil | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Genes, rRNA | RNA, Archaeal - genetics | Cluster Analysis | DNA, Ribosomal - genetics | Host-bacteria relationships | Growth | Distribution | Mangrove plants | Research | Growth (Plants) | Archaeabacteria | Soil microbiology | Microbial Ecology
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10. Full Text Archaeal CRISPR-based immune systems: exchangeable functional modules
by Garrett, Roger A and Vestergaard, Gisle and Shah, Shiraz A
Trends in Microbiology, ISSN 0966-842X, 2011, Volume 19, Issue 11, pp. 549 - 556
CRISPR (clustered regularly interspaced short palindromic repeats)-based immune systems are essentially modular with three primary functions: the excision and... 
Internal Medicine | SMALL RNA | SULFOLOBUS | ANTIVIRAL DEFENSE | VIRUS | RECOGNITION | STRUCTURAL BASIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESISTANCE | MICROBIOLOGY | INTERFERENCE | IDENTIFICATION | HORIZONTAL GENE-TRANSFER | Biological Evolution | DNA, Archaeal - genetics | Archaea - virology | DNA, Archaeal - chemistry | DNA, Archaeal - immunology | Archaea - chemistry | Archaea - genetics | Archaea - immunology | Bacteriophages - physiology | Bacteriophages - immunology | Inverted Repeat Sequences
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