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1. Full Text Ribosomal RNA Gene Restriction Patterns Provide Increased Sensitivity for Typing Salmonella typhi Strains
by M. Altwegg and F. W. Hickman-Brenner and J. J. Farmer
The Journal of Infectious Diseases, ISSN 0022-1899, 7/1989, Volume 160, Issue 1, pp. 145 - 149
To date, epidemiologic associations among strains of Salmonella typhi are based exclusively on phage typing, which may be of limited value if a common phage... 
Bacteriophages | Enzymes | Bacteriophage typing | RNA | Plasmids | Ribosomal RNA | DNA | rRNA genes | Concise Communications | Salmonella typhi | Bile | INFECTIOUS DISEASES | Nucleic Acid Hybridization | DNA, Bacterial - genetics | DNA, Ribosomal - analysis | Bacteriophage Typing | Humans | Salmonella typhi - classification | RNA, Bacterial - genetics | DNA, Bacterial - analysis | RNA, Ribosomal - genetics | Restriction Mapping | Salmonella typhi - genetics | DNA, Ribosomal - genetics
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2. Full Text The multifunctional nucleolus
by Navascués, Joaquín and Lamond, Angus I and Boisvert, François-Michel and van Koningsbruggen, Silvana
Nature Reviews Molecular Cell Biology, ISSN 1471-0072, 07/2007, Volume 8, Issue 7, pp. 574 - 585
The nucleolus is a distinct subnuclear compartment that was first observed more than 200 years ago. Nucleoli assemble around the tandemly repeated ribosomal... 
BREAST-CANCER CELLS | RNA-POLYMERASE-I | HORMONE-RELATED PROTEIN | DYSKERATOSIS-CONGENITA | NUCLEAR EXPORT SIGNAL | SUBCELLULAR-LOCALIZATION | TRANSCRIPTION MACHINERY | MAMMALIAN-CELLS | WERNER-SYNDROME PROTEIN | GENE-PRODUCT | CELL BIOLOGY | Nucleolus Organizer Region - physiology | Cell Nucleolus - physiology | DNA, Ribosomal - analysis | Mitosis | RNA, Ribosomal, 5S - biosynthesis | Humans | RNA, Ribosomal, 5.8S - genetics | RNA, Ribosomal, 28S - metabolism | Ribosomes - metabolism | RNA, Ribosomal, 5.8S - metabolism | RNA, Ribosomal - genetics | RNA, Ribosomal, 5S - genetics | RNA, Small Nucleolar - metabolism | Cell Nucleolus - metabolism | Cell Nucleolus - ultrastructure | RNA Precursors - metabolism | Ribonucleoproteins - genetics | Indoles | RNA, Ribosomal, 18S - metabolism | Cell Nucleolus - genetics | RNA, Ribosomal, 18S - genetics | Cell Nucleolus - chemistry | Nucleolus Organizer Region - ultrastructure | RNA, Ribosomal - metabolism | DNA, Ribosomal - biosynthesis | Ribonucleoproteins - metabolism | RNA, Small Nucleolar - genetics | Animals | Ribosomes - genetics | Models, Biological | RNA, Ribosomal, 28S - genetics | Fluorescent Dyes | Microscopy, Fluorescence | Nucleolus organizer region | Physiological aspects | Research | Ribosomal RNA | RNA polymerases
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3. Full Text Characterization of primary biogenic aerosol particles in urban, rural, and high-alpine air by DNA sequence and restriction fragment analysis of ribosomal RNA genes
by Després, V.R and Nowoisky, J.F and Klose, M and Conrad, R and Andreae, M.O and Pöschl, U
Biogeosciences, ISSN 1726-4170, 2007, Volume 4, Issue 6, pp. 1127 - 1141
This study explores the applicability of DNA analyses for the characterization of primary biogenic aerosol (PBA) particles in the atmosphere. Samples of fine... 
UNITED-STATES | BACTERIAL COMMUNITY STRUCTURE | ATMOSPHERIC AEROSOLS | GEOSCIENCES, MULTIDISCIPLINARY | AMPLIFICATION | MICROBIAL DIVERSITY | CLOUD | ANCIENT DNA | ECOLOGY | IDENTIFICATION | LENGTH-POLYMORPHISM | CLIMATE | Earth Sciences | Astrophysics | Continental interfaces, environment | Sciences of the Universe | Ocean, Atmosphere | Cosmology and Extra-Galactic Astrophysics | Physics
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4. Full Text Microbial community analysis with ribosomal gene fragments from shotgun metagenomes
by Guo, Jiarong and Cole, James R and Zhang, Qingpeng and Brown, Titus and Tiedje, James M and Michigan State Univ., East Lansing, MI (United States)
Applied and Environmental Microbiology, ISSN 0099-2240, 2016, Volume 82, Issue 1, pp. 157 - 166
Shotgun metagenomic sequencing does not depend on gene-targeted primers or PCR amplification; thus, it is not affected by primer bias or chimeras. However,... 
LARGE-SUBUNIT | ACCURATE | PCR PRIMERS | GENOMES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FUNGAL | BACTERIAL COMMUNITIES | RNA SEQUENCES | CLASSIFICATION | MICROBIOLOGY | DIVERSITY | IDENTIFICATION | Metagenomics | Bacteria - isolation & purification | Ribosomes - genetics | Soil Microbiology | Bacteria - classification | DNA Primers - genetics | Bacteria - genetics | Metagenome | RNA, Ribosomal - genetics | Genetic aspects | Research | RNA | Microbial colonies | BASIC BIOLOGICAL SCIENCES
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5. Full Text Integrative genomic analysis of human ribosomal DNA
by Zentner, Gabriel E and Saiakhova, Alina and Manaenkov, Pavel and Adams, Mark D and Scacheri, Peter C
Nucleic Acids Research, ISSN 0305-1048, 7/2011, Volume 39, Issue 12, pp. 4949 - 4960
The transcription of ribosomal RNA (rRNA) is critical to life. Despite its importance, ribosomal DNA (rDNA) is not included in current genome assemblies and,... 
NUCLEOLUS | RNA-POLYMERASE-I | CHROMATIN STRUCTURES | BIOGENESIS | SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | GENES | REMODELING COMPLEX NORC | BETA-CATENIN | EPIGENETIC STATE | Chromatin - metabolism | Promoter Regions, Genetic | Genomics | Humans | Nucleosomes - metabolism | DNA, Ribosomal - metabolism | RNA Polymerase I - metabolism | DNA, Ribosomal - chemistry | Sequence Analysis, DNA | Sequence Alignment | Chromatin Immunoprecipitation | CCCTC-Binding Factor | Pol1 Transcription Initiation Complex Proteins - metabolism | HEK293 Cells | K562 Cells | RNA, Ribosomal - biosynthesis | Transcription, Genetic | High-Throughput Nucleotide Sequencing | Histones - metabolism | Genome, Human | Repressor Proteins - metabolism | Gene Regulation, Chromatin and Epigenetics
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6. Full Text Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
by Stoeck, Thorsten and Bass, David and Nebel, Markus and Christen, Richard and Jones, Meredith D. M and Breiner, Hans-Werner and Richards, Thomas A
Molecular Ecology, ISSN 0962-1083, 03/2010, Volume 19, Issue 1, pp. 21 - 31
Sequencing of ribosomal DNA clone libraries amplified from environmental DNA has revolutionized our understanding of microbial eukaryote diversity and ecology.... 
Microbial eukaryotes | V9 SSU rDNA1 | 454 sequencing | Marine anoxic | V4 SSU rDNA | BIODIVERSITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | V9 SSU rDNA | SUBUNIT RIBOSOMAL-RNA | MOLECULAR PHYLOGENY | SEA | marine anoxic | GENETIC DIVERSITY | EVOLUTIONARY BIOLOGY | PROTOZOA | MICROBIAL DIVERSITY | microbial eukaryotes | ECOLOGY | 18S RDNA | PROTISTAN DIVERSITY | PCR | Seawater - microbiology | DNA, Ribosomal - analysis | Gene Library | DNA, Ribosomal - isolation & purification | Computational Biology | Biodiversity | Dinoflagellida - genetics | Sequence Tagged Sites | Sequence Analysis, DNA - methods | Dinoflagellida - classification | Water Microbiology | Cluster Analysis | DNA, Ribosomal - genetics | Computer science | Biological products | Museums | Ecology | Universities and colleges | Recombinant DNA | Fjords | Natural history | Biological diversity | Biomarkers | Microbiology | Molecular biology | Deoxyribonucleic acid--DNA | Life Sciences | DNA, Ribosomal | Dinoflagellida | Development Biology | Sequence Analysis, DNA | Seawater
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7. Full Text Discovery of novel intermediate forms redefines the fungal tree of life
by Jones, Meredith D. M and Forn, Irene and Gadelha, Catarina and Egan, Martin J and Bass, David and Massana, Ramon and Richards, Thomas A
Nature, ISSN 0028-0836, 06/2011, Volume 474, Issue 7350, pp. 200 - 204
Fungi are the principal degraders of biomass in terrestrial ecosystems and establish important interactions with plants and animals(1-3). However, our current... 
OLIGONUCLEOTIDE PROBES | LAND PLANTS | EVOLUTION | COMMUNITY | SEQUENCE DATA | MULTIDISCIPLINARY SCIENCES | DIVERSITY | EUKARYOTES | ROZELLA | RIBOSOMAL-RNA | MOLECULAR PHYLOGENY | Flagella - physiology | DNA, Fungal - analysis | DNA, Fungal - genetics | DNA, Ribosomal - analysis | Fungi - classification | Fungi - cytology | Molecular Sequence Data | In Situ Hybridization, Fluorescence | Cell Wall - chemistry | Phylogeny | Biodiversity | Fungi - genetics | RNA, Ribosomal - genetics | Life Cycle Stages | Sequence Alignment | Animals | Fungi - growth & development | Chitin - deficiency | Chitin - analysis | DNA, Ribosomal - genetics | Fungi | Usage | Ribosomal RNA | Environmental aspects | Life cycles (Biology) | Research | Observations | National parks | Microbiology | Cloning | Genes | Ribosomal DNA | Bacteria | Deoxyribonucleic acid--DNA | Methods | Membrane filters | Biological diversity
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8. Full Text Bacterial Community Variation in Human Body Habitats across Space and Time
by Elizabeth K. Costello and Christian L. Lauber and Micah Hamady and Noah Fierer and Jeffrey I. Gordon and Rob Knight
Science, ISSN 0036-8075, 12/2009, Volume 326, Issue 5960, pp. 1694 - 1697
Elucidating the biogeography of bacterial communities on the human body is critical for establishing healthy baselines from which to detect differences... 
Community structure | Hair | Microbiota | Forearm | Habitats | Communities | Mouth | Phylogenetics | Bacteria | Reports | Genetic diversity | DIVERSITY | MICROBIAL COMMUNITIES | FLORA | MULTIDISCIPLINARY SCIENCES | Skin - microbiology | DNA, Ribosomal - analysis | Hair - microbiology | Humans | Middle Aged | Male | Phylogeny | Biodiversity | Feces - microbiology | Time Factors | Bacteria - classification | Adult | DNA, Bacterial - analysis | Female | Principal Component Analysis | DNA, Ribosomal - genetics | DNA, Bacterial - isolation & purification | DNA, Ribosomal - isolation & purification | Ear Canal - microbiology | Bacteria - genetics | Bacteria - isolation & purification | DNA, Bacterial - genetics | Mouth - microbiology | RNA, Ribosomal, 16S - genetics | Genes, rRNA | Nose - microbiology | Metagenome | Cluster Analysis | Microbiota (Symbiotic organisms) | Biogeography | Research | Human body | Microbiology
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9. Analysis of ribosomal RNA stability in dead cells of wine yeast by quantitative PCR
by Merce Sunyer-Figueres and Chunxiao Wang and Albert Mas
International Journal of Food Microbiology, ISSN 0168-1605, 04/2018, Volume 270, p. 1
During wine production, some yeasts enter a Viable But Not Culturable (VBNC) state, which may influence the quality and stability of the final wine through... 
Wine | Cell culture | Yeasts | Yeast | rRNA | Ribosomal DNA | Stability analysis | High temperature | Saccharomyces | Polymerase chain reaction | Wines | Microorganisms | Ribonucleic acids | Lysis | Viability | Saccharomyces cerevisiae | Resuscitation
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10. Full Text Analysis of Ribosomal DNA Cannot Unequivocally Assign Ascaris to Species Level or Identify Hybrids
by Nejsum, Peter and Betson, Martha and Stothard, Russell
The Journal of Infectious Diseases, ISSN 0022-1899, 09/2017, Volume 216, Issue 5, pp. 616 - 617
PIGS | INFECTIOUS DISEASES | MOLECULAR EPIDEMIOLOGY | MICROBIOLOGY | IMMUNOLOGY | Ascariasis | Iowa | Animals | DNA, Ribosomal | Molecular Epidemiology | Swine | Ascaris - genetics | Research | Extrachromosomal DNA | Ribosomes | Ascaris
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11. Full Text Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil
by Noah Fierer and Mya Breitbart and James Nulton and Peter Salamon and Catherine Lozupone and Ryan Jones and Michael Robeson and Robert A. Edwards and Ben Felts and Steve Rayhawk and Rob Knight and Forest Rohwer and Robert B. Jackson
Applied and Environmental Microbiology, ISSN 0099-2240, 11/2007, Volume 73, Issue 21, pp. 7059 - 7066
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
SPECIES-DIVERSITY | POLYMERASE-CHAIN-REACTION | MICROBIAL COMMUNITIES | ESTIMATING PROKARYOTIC DIVERSITY | BODY-SIZE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | VIRAL COMMUNITIES | ECOLOGY | MICROBIOLOGY | 16S RDNA LIBRARIES | 18S RDNA | ABUNDANCE | Viruses - genetics | DNA, Ribosomal - analysis | Soil Microbiology | Archaea - classification | Bacteria - genetics | RNA, Ribosomal - genetics | Genetic Variation | Viruses - classification | DNA - isolation & purification | Bacteria - growth & development | Bacteria - classification | RNA, Bacterial - genetics | Archaea - genetics | RNA, Ribosomal - analysis | Genome | DNA, Ribosomal - genetics | Bacteria | Viruses | Genetic aspects | Research | Ribosomal RNA | DNA | Microbial Ecology
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12. Full Text A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
by Chakravorty, Soumitesh and Helb, Danica and Burday, Michele and Connell, Nancy and Alland, David
Journal of Microbiological Methods, ISSN 0167-7012, 2007, Volume 69, Issue 2, pp. 330 - 339
Bacterial 16S ribosomal RNA (rRNA) genes contain nine “hypervariable regions” (V1–V9) that demonstrate considerable sequence diversity among different... 
Bacteria | Gene segments | Diagnosis | 16S ribosomal RNA | gene segments | bacteria | TUBERCULOSIS | BIOCHEMICAL RESEARCH METHODS | PRIMERS | diagnosis | SPECIES IDENTIFICATION | MICROBIOLOGY | MOLECULAR BEACONS | LEVEL | PROBES | REAL-TIME PCR | VARIABLE REGION | AMPLIFICATION | SEQUENCE | Humans | RNA, Ribosomal, 16S - analysis | DNA, Bacterial - chemistry | Gram-Positive Bacterial Infections - diagnosis | Bacteria - genetics | Sequence Analysis, DNA | Polymerase Chain Reaction - methods | Genetic Variation | Bacteria - isolation & purification | RNA, Ribosomal, 16S - chemistry | Sequence Alignment | DNA, Bacterial - genetics | Gram-Positive Bacterial Infections - microbiology | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Genetic research | Analysis
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