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1. Full Text Environmental sex determination in the branchiopod crustacean Daphnia magna: Deep conservation of a Doublesex gene in the sex-determining pathway
by Kato, Yasuhiko and Kobayashi, Kaoru and Watanabe, Hajime and Iguchi, Taisen
PLoS Genetics, ISSN 1553-7390, 03/2011, Volume 7, Issue 3, p. e1001345
Sex-determining mechanisms are diverse among animal lineages and can be broadly divided into two major categories: genetic and environmental. In contrast to... 
DM-DOMAIN GENE | MESSENGER-RNAS | DMRT1 | DROSOPHILA-MELANOGASTER | UNTRANSLATED REGIONS | GENETICS & HEREDITY | EVOLUTIONARY DYNAMICS | DIFFERENTIATION | WATER FLEA | EXPRESSION | TRANSFORMER GENE | Amino Acid Sequence | Conserved Sequence - genetics | Sex Determination Processes - genetics | Molecular Sequence Data | Male | Phylogeny | DNA-Binding Proteins - genetics | Daphnia - classification | Daphnia - metabolism | Sequence Alignment | Animals | Gene Expression Regulation, Developmental | Base Sequence | RNA Splicing - genetics | Cloning, Molecular | Environment | Female | Daphnia - genetics | Gene Order | Daphnia | Physiological aspects | Genetic aspects | Research | Genes | Sex determination, Genetic | Genotype & phenotype | Crustaceans | Colleges & universities | Phylogenetics | Nematodes | Genetics | Life sciences | Males | Females | Experiments | Bioinformatics | Population density
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2. Full Text Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres
by Yin, Mingbo and Wang, Xiaoyu and Ma, Xiaolin and Gießler, Sabine and Petrusek, Adam and Griebel, Johanna and Hu, Wei and Wolinska, Justyna
BMC Evolutionary Biology, ISSN 1471-2148, 09/2018, Volume 18, Issue 1, pp. 130 - 12
Background: The zooplanktonic cladocerans Daphnia, present in a wide range of water bodies, are an important component of freshwater ecosystems. In contrast to... 
Population structure | 12S rRNA | Microsatellites | Cyclical parthenogenesis | Genetic variation | Cladocera | COMPLEX CRUSTACEA | HYBRIDIZING DAPHNIA | DNA VARIATION | LAKES | GENE FLOW | EUROPEAN DAPHNIA | SOFTWARE | EVOLUTIONARY BIOLOGY | LONGISPINA COMPLEX | GENETICS & HEREDITY | DIFFERENTIATION | Geography | Genetics, Population | Europe | Phylogeny | Genes, Mitochondrial | Microsatellite Repeats - genetics | DNA - genetics | Genetic Variation | Zooplankton - genetics | Haplotypes - genetics | Animals | DNA, Mitochondrial - genetics | Cell Nucleus - genetics | Mitochondria - genetics | China | Alleles | Bayes Theorem | Daphnia - genetics | Haplotypes | Daphnia | Genetic aspects | Identification and classification | Analysis | Biological diversity | RNA | Statistics | Genes | Divergence | Populations | rRNA 12S | Biogeography | Mitochondrial DNA | Genetic distance | Population genetics | Eggs | Plankton | Dispersal | Phylogenetics | Evolution | Population | Bioinformatics | Deoxyribonucleic acid--DNA | Integrated software | Genealogy | Waterfowl | Genetic structure | Markers | Genetic diversity | Freshwater ecosystems | Clustering | Cosmopolitanism | Genetic markers | Morphology | Lakes | Differentiation | Bayesian analysis | Aquatic ecosystems
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3. Full Text Population genetics of duplicated alternatively spliced exons of the Dscam gene in Daphnia and Drosophila
by Brites, Daniela and Encinas-Viso, Francisco and Ebert, Dieter and Du Pasquier, Louis and Haag, Christoph R
PLoS ONE, ISSN 1932-6203, 12/2011, Volume 6, Issue 12, p. e27947
In insects and crustaceans, the Down syndrome cell adhesion molecule (Dscam) occurs in many different isoforms. These are produced by mutually exclusive... 
TESTS | CODON-SUBSTITUTION MODELS | OVERDOMINANT | NUCLEOTIDE SUBSTITUTION | MULTIDISCIPLINARY SCIENCES | MOLECULAR EVOLUTION | DETECTING POSITIVE SELECTION | BALANCING SELECTION | POLYMORPHISM | LOCUS | SOFTWARE | Geography | Gene Conversion - genetics | Gene Dosage - genetics | Genetics, Population | Cell Adhesion Molecules - genetics | Genes, Insect - genetics | Alternative Splicing - genetics | Selection, Genetic | Models, Molecular | Nucleotides - genetics | Exons - genetics | Drosophila melanogaster - genetics | Polymorphism, Genetic | Likelihood Functions | Animals | Drosophila melanogaster - chemistry | Gene Duplication - genetics | Epitopes - chemistry | Drosophila Proteins - genetics | Daphnia - genetics | Analysis | Genes | Drosophila | Genetic engineering | Genetic aspects | Down syndrome | Population genetics | Antigenic determinants | Protein binding | Alternative splicing | Divergence | Exons | Biological evolution | Positive selection | Nervous system | Genomes | Cell adhesion molecules | Proteins | Crustaceans | Adhesive strength | Down's syndrome | Reproduction (copying) | DSCAM protein | Cell adhesion | Genetics | Trends | Species | Immune system | Binding | Pathogens | Immunoglobulins | Neural cell adhesion molecule | Splicing | Epitopes | Natural selection | Molecular evolution | Insects | Isoforms | Alleles | Molecular biology | Females | Arrays | Gene conversion | Evolution & development | Structural analysis
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4. Full Text RELAX: Detecting relaxed selection in a phylogenetic framework
by Wertheim, Joel O and Murrell, Ben and Smith, Martin D and Pond, Sergei L. Kosakovsky and Scheffler, Konrad
Molecular Biology and Evolution, ISSN 0737-4038, 2015, Volume 32, Issue 3, pp. 820 - 832
Relaxation of selective strength, manifested as a reduction in the efficiency or intensity of natural selection, can drive evolutionary innovation and presage... 
Bornavirus | Molecular evolution | Endosymbionts | Daphnia pulex | Relaxed selection | Phylogenetics | Opsin | Codon models | Echolocation | EVOLUTIONARY ORIGIN | echolocation | CODON-SUBSTITUTION MODELS | endosymbionts | NUCLEOTIDE SUBSTITUTION | BIOCHEMISTRY & MOLECULAR BIOLOGY | opsin | INDIVIDUAL SITES | TASTE RECEPTOR GENES | FACULTATIVE SYMBIONTS | PURIFYING SELECTION | molecular evolution | COLOR-VISION | EVOLUTIONARY BIOLOGY | relaxed selection | BACTERIAL ENDOSYMBIONTS | bornavirus | SEQUENCE ALIGNMENT | GENETICS & HEREDITY | phylogenetics | codon models | Computational Biology - methods | Opsins - genetics | Bornaviridae - genetics | Phylogeny | Sequence Analysis, DNA | Selection, Genetic - genetics | Animals | Computer Simulation | Gammaproteobacteria - genetics | Models, Genetic | Codon - genetics | Chiroptera - genetics | Daphnia - genetics | Evolution, Molecular | Methods
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5. Full Text Spatial population genetic structure of a bacterial parasite in close coevolution with its host
by Andras, Jason P and Fields, Peter D and Ebert, Dieter
Molecular Ecology, ISSN 0962-1083, 03/2018, Volume 27, Issue 6, pp. 1371 - 1384
Knowledge of a species’ population genetic structure can provide insight into fundamental ecological and evolutionary processes including gene flow, genetic... 
Pasteuria ramosa | isolation by distance | parasite | bacteria | population genetic structure | coevolution | LOCAL ADAPTATION | GENOTYPE | BIOCHEMISTRY & MOLECULAR BIOLOGY | DISPERSAL | EVOLUTIONARY BIOLOGY | PASTEURIA-RAMOSA | EVOLUTION | DAPHNIA-MAGNA | CONSEQUENCES | RESISTANCE | DYNAMICS | ECOLOGY | SCALE | Genetics, Population | Host-Parasite Interactions - genetics | Animals | Ecosystem | Daphnia - microbiology | Minisatellite Repeats - genetics | Genotype | Genetic Variation - genetics | Pasteuria - genetics | Daphnia - parasitology | Evolution, Molecular | Genetic research | Genetic aspects | Bacterial genetics | Ponds | Epidemiology | Analysis | Geography | Genetic drift | Recombination | Genetic structure | Biological evolution | Phenotypic variations | Principal components analysis | Population structure | Genetic diversity | Parasites | Coevolution | Sediments | Population genetics | Loci | Crustaceans | Gene flow | Population | Evolution | Evolution & development | Genotypes
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6. Full Text The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model
by Bento, Gilberto and Routtu, Jarkko and Fields, Peter D and Bourgeois, Yann and Du Pasquier, Louis and Ebert, Dieter
PLoS Genetics, ISSN 1553-7390, 02/2017, Volume 13, Issue 2, p. e1006596
Negative frequency-dependent selection (NFDS) is an evolutionary mechanism suggested to govern host-parasite coevolution and the maintenance of genetic... 
DYNAMICS | COEVOLUTION | EVOLUTION | INFECTION PROCESS | SELECTION | GENETICS & HEREDITY | Daphnia - microbiology | Genotype | Polymorphism, Genetic | Selection, Genetic - genetics | Genetic Variation | Haplotypes - genetics | Host-Parasite Interactions - genetics | Animals | Pasteuria - pathogenicity | Alleles | Pasteuria - genetics | Daphnia - genetics | Evolution, Molecular | Gram-positive bacteria | Research | Analysis | Biological diversity | Haplotypes | Medical research | Funding | Genes | Zoology | Cloning | Genomes | Genetic diversity | Parasites
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7. Full Text Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools
by Dufresne, France and Stift, Marc and Vergilino, Roland and Mable, Barbara K
Molecular Ecology, ISSN 0962-1083, 01/2014, Volume 23, Issue 1, pp. 40 - 69
Despite the importance of polyploidy and the increasing availability of new genomic data, there remain important gaps in our knowledge of polyploid population... 
mixed modes of reproduction | polyploidy | hybridization | next‐generation sequencing | next-generation sequencing | MULTILOCUS GENOTYPE DATA | DAPHNIA-PULEX COMPLEX | BIOCHEMISTRY & MOLECULAR BIOLOGY | MULTIPLE ORIGINS | MICROSATELLITE NULL ALLELES | POLYMORPHISM SNP DISCOVERY | GENOME DUPLICATION | EVOLUTIONARY BIOLOGY | CAPSELLA-BURSA-PASTORIS | AFRICAN CLAWED FROGS | ECOLOGY | DNA-SEQUENCING DATA | MULTIVARIATE-ANALYSIS | Polyploidy | Gene Frequency | Gene Dosage | Genetic Markers | Statistics as Topic - methods | DNA Copy Number Variations | Amplified Fragment Length Polymorphism Analysis - methods | Inheritance Patterns | Genetics, Population - methods | Alleles | Models, Genetic | Polymorphism, Single Nucleotide | Sequence Analysis, DNA - methods | Microsatellite Repeats | Population genetics | Genetic aspects | Organisms | Statistical analysis | Molecular biology
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8. Full Text The Red Queen lives: Epistasis between linked resistance loci
by César M. J. A. Metzger and Pepijn Luijckx and Gilberto Bento and Mahendra Mariadassou and Dieter Ebert
Evolution, ISSN 0014-3820, 2/2016, Volume 70, Issue 2, pp. 480 - 487
A popular theory explaining the maintenance of genetic recombination (sex) is the Red Queen Theory. This theory revolves around the idea that time-lagged... 
BRIEF COMMUNICATIONS | Red Queen Theory | negative frequency‐dependent selection | Pasteuria ramosa | Coevolution | matching allele mode | Daphnia magna | Matching allele mode | Negative frequency-dependent selection | negative frequency-dependent selection | INFECTION GENETICS | DROSOPHILA-MELANOGASTER | SEX | BACTERIAL PARASITE | GENETIC ARCHITECTURE | DAPHNIA | HOST-PARASITE COEVOLUTION | RECOMBINATION RATE VARIATION | EVOLUTIONARY BIOLOGY | PASTEURIA-RAMOSA | SPECIES INTERACTIONS | GENETICS & HEREDITY | ECOLOGY | Daphnia - immunology | Daphnia - microbiology | Genetic Loci | Phenotype | Animals | Host-Pathogen Interactions - genetics | Pasteuria - pathogenicity | Epistasis, Genetic | Models, Genetic | Pasteuria - genetics | Daphnia - genetics | Disease Resistance - genetics | Genetic Linkage | Daphnia | Host-parasite relationships | Genetic aspects | Research | Genetic epistasis | Evolution | Gene loci | Parasites
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