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1. Full Text Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae)
by Massimo Iorizzo and Douglas A. Senalik and Shelby L. Ellison and Dariusz Grzebelus and Pablo F. Cavagnaro and Charlotte Allender and Johanne Brunet and David M. Spooner and Allen Van Deynze and Philipp W. Simon
American Journal of Botany, ISSN 0002-9122, 5/2013, Volume 100, Issue 5, pp. 930 - 938
Premise of the study: Analyses of genetic structure and phylogenetic relationships illuminate the origin and domestication of modern crops. Despite being an... 
Carrots | Colors | Crop science | Biological evolution | Botany | Food crops | Plant domestication | Genetics | Genetic diversity | Evolution and Phylogeny | Hybridity | genetic diversity | Daucus carota | Apiaceae | single nucleotide polymorphism (SNP) | domestication | NUCLEOTIDE DIVERSITY | CROP DOMESTICATION | CULTIVATED RICE | AFLP ANALYSIS | MOLECULAR DIVERSITY | GENOME | PLANT SCIENCES | BARLEY HORDEUM-VULGARE | WILD CARROTS | SINGLE DOMESTICATION | POPULATION-STRUCTURE | Africa, Northern | South America | Asia | Europe | Agriculture | Polymorphism, Single Nucleotide | Genetic Markers | Phylogeny | DNA, Plant - genetics | Daucus carota - genetics | Pigments, Biological | Domestication | Genetic aspects | Research | Single nucleotide polymorphisms
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2. Full Text A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
by Iorizzo, Massimo and Ellison, Shelby and Senalik, Douglas and Zeng, Peng and Satapoomin, Pimchanok and Huang, Jiaying and Bowman, Megan and Iovene, Marina and Sanseverino, Walter and Cavagnaro, Pablo and Yildiz, Mehtap and Macko-Podgórni, Alicja and Moranska, Emilia and Grzebelus, Ewa and Grzebelus, Dariusz and Ashrafi, Hamid and Zheng, Zhijun and Cheng, Shifeng and Spooner, David and Van Deynze, Allen and Simon, Philipp
Nature Genetics, ISSN 1061-4036, 06/2016, Volume 48, Issue 6, pp. 657 - 666
We report a high-quality chromosome-scale assembly and analysis of the carrot (Daucus carota) genome, the first sequenced genome to include a comparative... 
MAXIMUM-LIKELIHOOD | GENE | GENETICS & HEREDITY | TRANSPOSABLE ELEMENTS | POPULATION-STRUCTURE | ANALYSIS TOOLKIT | SEQUENCING DATA | FLOWERING TIME | TRANSCRIPTION FACTOR | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE | DAUCUS-CAROTA | Biological Evolution | Plant Roots - metabolism | Carotenoids - metabolism | Genes, Regulator | Daucus carota - metabolism | Daucus carota - classification | Genetic Markers | Genome, Plant | Phylogeny | Daucus carota - genetics | Genetic Linkage | Genomes | Carrots | Analysis | Evolution | Carotenoids | Genes | Quality
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3. Full Text Carrot (Daucus carota L.)
by Wally, Owen S. D and Punja, Zamir K
Methods in Molecular Biology, ISSN 1064-3745, 2015, Volume 1224, pp. 59 - 66
Plants are susceptible to infection by a broad range of fungal pathogens. A range of proteins have been evaluated that can enhance tolerance to these pathogens... 
Disease resistance | Carrot | Pathogenesis-related proteins | Genetic engineering | Herbicide resistance | Genetic Engineering - methods | Transformation, Genetic | Herbicide Resistance - genetics | Arabidopsis Proteins - genetics | Daucus carota - growth & development | Sterilization | Agrobacterium tumefaciens - genetics | Acetyltransferases - genetics | Daucus carota - genetics
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4. Full Text Historical and contemporary gene dispersal in wild carrot (Daucus carota ssp. carota) populations
by Jun Rong and Stef Janson and Mikihisa Umehara and Michiyuki Ono and Klaas Vrieling
Annals of Botany, ISSN 0305-7364, 8/2010, Volume 106, Issue 2, pp. 285 - 296
• Background and Aims Wild carrot is the ancestor of cultivated carrot and is the most important gene pool for carrot breeding. Transgenic carrot may be... 
Genetic structures | Mating systems | Gene flow | Carrots | Ecological genetics | Microsatellites | Genetic loci | Pollen | Plants | Population genetics | gene flow | isolation by distance | Daucus carota | transgene escape | outcrossing rate | microsatellite | neighbourhood size | pollen dispersal | FLOW | INTROGRESSION | PLANT SCIENCES | CONSERVATION | CULTIVATED CARROTS | PLANTS | ORYZA-RUFIPOGON POACEAE | DIFFERENTIATION | MATING SYSTEMS | HYBRIDS | Gene Flow - genetics | Genotype | Daucus carota - genetics | Microsatellite Repeats - genetics | Original
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5. Full Text Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States
by Mandel, Jennifer R and Ramsey, Adam J and Iorizzo, Massimo and Simon, Philipp W
PLoS ONE, ISSN 1932-6203, 09/2016, Volume 11, Issue 9, p. e0161971
Studies of gene flow between crops and their wild relatives have implications for both management practices for cultivation and understanding the risk of... 
Genetic Variation | Genetics, Population | Gene Flow | Seeds - genetics | United States | Gene Frequency | Plants, Genetically Modified | DNA, Chloroplast - genetics | Crops, Agricultural - genetics | Daucus carota - genetics | Microsatellite Repeats - genetics | Genetic markers | Genes | Genomics | Genomes | Comparative analysis | Population genetics | Biological diversity | Populations | Seeds | Biological evolution | Mitochondrial DNA | Endangered & extinct species | Chloroplasts | Evolution | Population | Pollen | Bioinformatics | Deoxyribonucleic acid--DNA | Crop fields | Cultivation | Genetic structure | Diversity indices | Crops | Markers | Chloroplast DNA | Genetic diversity | Heredity | Flow | Studies | Gene flow | Carrots | Gene frequency | Genetic engineering | Risk management | Differentiation | Deoxyribonucleic acid | DNA
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6. Full Text Pervasive mitochondrial sequence heteroplasmy in natural populations of wild carrot, Daucus carota spp. carota L
by Mandel, Jennifer R and McCauley, David E
PLoS ONE, ISSN 1932-6203, 08/2015, Volume 10, Issue 8, p. e0136303
Exceptions to the generally accepted rules that plant mitochondrial genomes are strictly maternally inherited and that within-individual sequence diversity in... 
RECOMBINATION | ATP9 GENES | GENOMES | MULTIDISCIPLINARY SCIENCES | PATERNAL LEAKAGE | MALE-STERILITY | PLANT SILENE-VULGARIS | GYNODIOECIOUS PLANT | FERTILE CARROTS | SSP CAROTA | INHERITANCE | Genotype | Daucus carota - classification | Electron Transport Complex IV - genetics | Genome, Plant | Linkage Disequilibrium | Biological Evolution | Inheritance Patterns | Proton-Translocating ATPases - genetics | Mitochondria - genetics | Recombination, Genetic | Polymorphism, Single Nucleotide | Genome, Mitochondrial | Daucus carota - genetics | Physiological aspects | Genetic aspects | Mitochondrial DNA | Carrots | Research | Plant genetics | Plant mitochondria | Recombination | Populations | Nucleotide sequence | Natural populations | Genes | Linkage disequilibrium | Genomes | Single-nucleotide polymorphism | Studies | Mitochondria | Heteroplasmy | Evolution | Genetics | Deoxyribonucleic acid--DNA | Genotypes | Deoxyribonucleic acid | DNA
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7. Full Text Levels of Lycopene β-Cyclase 1 Modulate Carotenoid Gene Expression and Accumulation in Daucus carota
by Moreno, Juan Camilo and Pizarro, Lorena and Fuentes, Paulina and Handford, Michael and Cifuentes, Victor and Stange, Claudia
PLoS ONE, ISSN 1932-6203, 03/2013, Volume 8, Issue 3, p. e58144
Plant carotenoids are synthesized and accumulated in plastids through a highly regulated pathway. Lycopene beta-cyclase (LCYB) is a key enzyme involved... 
ARABIDOPSIS-THALIANA | ENZYME | DESATURASE | CLONING | MULTIDISCIPLINARY SCIENCES | BIOSYNTHETIC-PATHWAY | EPSILON-CYCLASE | FUNCTIONAL-CHARACTERIZATION | TOMATO REVEALS | STRUCTURAL GENES | PHYTOENE SYNTHASE | beta Carotene - genetics | Plant Roots - genetics | Gene Expression Regulation, Enzymologic - physiology | Daucus carota - enzymology | Plant Proteins - genetics | Intramolecular Lyases - genetics | Plant Leaves - genetics | Gene Expression Regulation, Plant - physiology | Intramolecular Lyases - biosynthesis | Plant Roots - enzymology | beta Carotene - biosynthesis | Plant Proteins - biosynthesis | Plant Leaves - enzymology | Daucus carota - genetics | Genes | Genomics | Roots | Biosynthesis | Transgenic plants | Accumulation | Fruits | Leaves | Carotenoids | E coli | Bacteria | Physiology | Complementation | Flowers & plants | Plastids | Chlorophyll | Enzymes | Metabolism | Gene expression | Lycopene | β-Carotene | Gene silencing | Storage | Isoforms | Binding sites
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8. Full Text Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)
by Arbizu, Carlos I and Ellison, Shelby L and Senalik, Douglas and Simon, Philipp W and Spooner, David M
BMC Evolutionary Biology, ISSN 1471-2148, 10/2016, Volume 16, Issue 1, pp. 1 - 16
Background: The majority of the subspecies of Daucus carota have not yet been discriminated clearly by various molecular or morphological methods and hence... 
Genotyping-by-sequencing (GBS) | Single nucleotide polymorphisms (SNPs) | Carrot | Phylogeny | Daucus carota | PHYLOGENETIC ANALYSIS | TOOL SET | MISSING DATA | MOLECULAR PHYLOGENY | SNP MARKERS | INFERRING PHYLOGENY | GENETIC-STRUCTURE | EVOLUTIONARY BIOLOGY | GENETICS & HEREDITY | POPULATION-STRUCTURE | Genetic Variation | Likelihood Functions | Species Specificity | Daucus carota - anatomy & histology | Polymorphism, Single Nucleotide - genetics | Genotype | Ecotype | Genotyping Techniques - methods | Sequence Analysis, DNA - methods | Daucus carota - genetics | Queen Anne's lace | Usage | Physiological aspects | Genetic aspects | Research | Single nucleotide polymorphisms | Nucleotide sequencing | DNA sequencing
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9. Full Text Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants
by Li, Meng-Yao and Xu, Zhi-Sheng and Tian, Chang and Huang, Ying and Wang, Feng and Xiong, Ai-Sheng
Scientific Reports, ISSN 2045-2322, 03/2016, Volume 6, Issue 1, p. 23101
WRKY transcription factors belong to one of the largest transcription factor families. These factors possess functions in plant growth and development, signal... 
DNA-BINDING | TRANSGENIC ARABIDOPSIS PLANTS | DEFENSE RESPONSE | REGULATORY NETWORKS | ABIOTIC STRESSES | MULTIDISCIPLINARY SCIENCES | GENES | HIGH-SALINITY | EXPRESSION PROFILES | ABSCISIC-ACID | DROUGHT TOLERANCE | Transcriptome | Genome, Plant | Phylogeny | Transcription Factors - genetics | Arabidopsis - genetics | Biological Evolution | Sequence Homology, Amino Acid | Transcription Factors - metabolism | Plant Proteins - genetics | Two-Hybrid System Techniques | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Daucus carota - genetics | Proteins | Signal transduction | Transcription factors | Genes | Phylogenetics | Evolution | Genomes | Stress response
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10. Full Text Expression of carotenoid biosynthesis genes during carrot root development
by Jérémy Clotault and Didier Peltier and Romain Berruyer and Mathieu Thomas and Mathilde Briard and Emmanuel Geoffriau
Journal of Experimental Botany, ISSN 0022-0957, 1/2008, Volume 59, Issue 13, pp. 3563 - 3573
Carotenogenesis has been extensively studied in fruits and flower petals. Transcriptional regulation is thought to be the major factor in carotenoid... 
Sowing | Research Papers | Carotenoids | Carrots | Bolero dance | Developmental biology | Genes | Plant roots | Biosynthesis | Gene expression regulation | Plants | Daucus carota | Carotenoid accumulation | Gene expression | Root development | ETHYLENE REGULATION | PLANT SCIENCES | root development | FRUIT | CLONING | PATHWAY | LYCOPENE BETA-CYCLASE | PLANTS | TOMATO REVEALS | ACCUMULATION | YELLOW | gene expression | DAUCUS-CAROTA | Plant Roots - metabolism | Daucus carota - growth & development | Oxidoreductases - metabolism | Intramolecular Lyases - metabolism | Oxidoreductases - genetics | Alkyl and Aryl Transferases - metabolism | Plant Roots - genetics | Biosynthetic Pathways | Daucus carota - enzymology | Plant Proteins - genetics | Intramolecular Lyases - genetics | Alkyl and Aryl Transferases - genetics | Carotenoids - metabolism | Gene Expression Regulation, Plant | Plant Roots - enzymology | Geranylgeranyl-Diphosphate Geranylgeranyltransferase | Daucus carota - metabolism | Transcription, Genetic | Plant Proteins - metabolism | Plant Roots - growth & development | Daucus carota - genetics | Plants genetics | Life Sciences | Intramolecular Lyases | Plant Roots | Alkyl and Aryl Transferases | Genetics | Plant Proteins | Oxidoreductases
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11. Full Text Assessment and accessibility of phenotypic and genotypic diversity of carrot (Daucus carota L var. Sativus) cultivars commercially available in the United States
by Luby, Claire H and Dawson, Julie C and Goldman, Irwin L
PLoS ONE, ISSN 1932-6203, 12/2016, Volume 11, Issue 12, p. e0167865
Increased use of intellectual property rights over plant germplasm has led to a complicated landscape for exchange among plant breeders. Our goal was to... 
GENETIC-STRUCTURE | RIGHTS | MULTIDISCIPLINARY SCIENCES | INTELLECTUAL PROPERTY | POPULATIONS | R-PACKAGE | MULTIVARIATE-ANALYSIS | Genetic Variation | Vegetables - genetics | Phenotype | Vegetables - economics | United States | Daucus carota - economics | Genotype | Intellectual Property | Plant Breeding - economics | Plant Breeding - legislation & jurisprudence | Daucus carota - genetics | Carrots | Analysis | Physiological aspects | Genetic aspects | Nucleotide sequencing | Research | DNA sequencing | Biological diversity | Patents | Horticulture | Breeding | Property rights | Ribosomal DNA | Markets | Principal components analysis | Genomes | Genetic diversity | Proprietary | Multivariate analysis | Variance analysis | Gene sequencing | Germplasm | Plant breeding | Genotyping | Inventors | Intellectual property | Bioinformatics | Cultivars
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12. Full Text Nitrogen transfer in the arbuscular mycorrhizal symbiosis
by Govindarajulu, Manjula and Pfeffer, Philip E and Jin, Hairu and Abubaker, Jehad and Douds, David D and Allen, James W and Bücking, Heike and Lammers, Peter J and Shachar-Hill, Yair
Nature, ISSN 0028-0836, 06/2005, Volume 435, Issue 7043, pp. 819 - 823
Most land plants are symbiotic with arbuscular mycorrhizal fungi (AMF), which take up mineral nutrients from the soil and exchange them with plants for... 
TRANSLOCATION | FUNGUS GLOMUS-INTRARADICES | IN-VITRO | TRANSPORT | CARBON | METABOLISM | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | ROOTS | CARBOHYDRATE | ASSIMILATION | Nitrogen - metabolism | Acetates - metabolism | Gene Expression Regulation | Molecular Sequence Data | Daucus carota - microbiology | Amino Acids | Symbiosis - genetics | Nitrates - metabolism | Mycelium - metabolism | DNA, Bacterial - genetics | Mycorrhizae - genetics | Genes, Plant - genetics | Mycorrhizae - metabolism | Daucus carota - metabolism | Genes, Fungal - genetics | Arginine - metabolism | Daucus carota - genetics | Symbiosis | Fungi |