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Journal of Proteome Research, ISSN 1535-3893, 09/2008, Volume 7, Issue 9, pp. 3661 - 3667
Journal Article
Molecular and Cellular Proteomics, ISSN 1535-9476, 12/2010, Volume 9, Issue 12, pp. 2840 - 2852
Journal Article
Journal of the American Statistical Association, ISSN 0162-1459, 07/2018, Volume 113, Issue 523, pp. 973 - 982
We consider the problem of controlling the false discovery rate (FDR) among discoveries from searching an incomplete database. This problem differs from the... 
False discovery rate | Tandem mass spectrometry | Multiple hypothesis testing | RATES | TANDEM MASS-SPECTRA | DECOY SEARCH STRATEGY | SHOTGUN PROTEOMICS | STATISTICS & PROBABILITY | SPECTROMETRY | false discovery rate | tandem mass spectrometry | multiple hypothesis testing
Journal Article
by Feng, XD and Ma, J and Chang, C and Bai, MZ and Zhu, YP and Shu, KX
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, ISSN 1000-3282, 07/2016, Volume 43, Issue 7, pp. 661 - 672
With the advance of mass spectrometry and experimental techniques, a huge amount of mass spectrometry (MS) data has been accumulated rapidly in the past few... 
SENSITIVE PEPTIDE IDENTIFICATION | quality control | STATISTICAL SIGNIFICANCE | BAYESIAN NONPARAMETRIC MODEL | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | MS/MS SPECTRA | VALIDATION | FALSE DISCOVERY RATES | tandem mass spectrum | SEQUENCE DATABASES | MASCOT PERCOLATOR | BIOPHYSICS | target-decoy | protein identification
Journal Article
Journal of Medical Imaging and Health Informatics, ISSN 2156-7018, 09/2015, Volume 5, Issue 5, pp. 1104 - 1107
This paper describes a machine-learning method for docking score calculation with the Database of Useful Decoys: Enhanced (DUD-E). This database includes both... 
In Silico Screening | SVM | Drug Discovery | Machine Learning | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Decoys | Enzymes | Databases | Inhibitors | Mathematical analysis | Docking | Ligands | Software | Computer programs
Journal Article
Proceedings of the 2013 ACM SIGSAC conference on computer & communications security, ISSN 1543-7221, 11/2013, pp. 187 - 198
Password-based authentication is the dominant form of access control in web services. Unfortunately, it proves to be more and more inadequate every year. Even... 
synergy | decoys | password leak | authentication
Conference Proceeding
CHINESE JOURNAL OF ANALYTICAL CHEMISTRY, ISSN 0253-3820, 10/2009, Volume 37, Issue 10, pp. 1473 - 1478
Mascot and SEQUEST are two of the most popular protein database search tools for proteomics research currently. In this study, we try to compare Mascot search... 
CHEMISTRY, ANALYTICAL | protein database search | Mascot database search tool | ALGORITHM | SENSITIVITY | partial least squares-linear discriminant analysis | IDENTIFICATION | PEPTIDE | SEQUEST database search tool tandem mass spectrometry | decoy | SPECTRA | SELECTION | PROTEOMICS
Journal Article
Analytical Chemistry, ISSN 0003-2700, 04/2017, Volume 89, Issue 7, pp. 3829 - 3833
Cross-linking/mass spectrometry is an increasingly popular approach to obtain structural information on proteins and their complexes in solution. However,... 
RNA-POLYMERASE-II | CHEMISTRY, ANALYTICAL | DATABASE | DECOY SEARCH STRATEGY | COMPLEXES | MASS-SPECTROMETRY | PROTEOMICS | Technical Note
Journal Article
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