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1. Full Text New Insights into Myosin Evolution and Classification
by Bernardo J. Fothau and Marc C. Goedecke and Dominique Soldati
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2006, Volume 103, Issue 10, pp. 3681 - 3686
Myosins are eukaryotic actin-dependent molecular motors important for a broad range of functions like muscle contraction, vision, hearing, cell motility, and... 
Datasets | Cell motility | Head | Motor ability | Phylogenetics | Amino acids | Genomes | Phylogeny | Parasites | Diatoms | Chromalveolata | Apicomplexa | ACTIN | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | TETRAHYMENA-THERMOPHILA | FAMILY TREE | EUKARYOTES | INVASION | GENE | MOTOR | TOXOPLASMA-GONDII | UNCONVENTIONAL MYOSIN | Kinetoplastida - chemistry | Chordata | Plasmodium - genetics | Molecular Sequence Data | Myosins - classification | Ciliophora - chemistry | Insecta - genetics | Myosins - chemistry | Myosins - genetics | Apicomplexa - genetics | Apicomplexa - chemistry | Animals | Insecta - chemistry | Plasmodium - chemistry | Microsporidia - chemistry | Ciliophora - genetics | Kinetoplastida - genetics | Microsporidia - genetics | Models, Genetic | Evolution, Molecular | Myosin | Research | Proteins | Evolution | Cells | Classification | Index Medicus | Biological Sciences
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2. Full Text Gene Regulation of Carbon Fixation, Storage, and Utilization in the Diatom Phaeodactylum tricornutum Acclimated to Light/Dark Cycles
by Matilde Skogen Chauton and Per Winge and Tore Brembu and Olav Vadstein and Atle M. Bones
Plant Physiology, ISSN 0032-0889, 2/2013, Volume 161, Issue 2, pp. 1034 - 1048
The regulation of carbon metabolism in the diatom Phaeodactylum tricornutum at the cell, metabolite, and gene expression levels in exponential fed-batch... 
Enzymes | Scotophase | Photophase | Genes | SYSTEMES AND SYNTHETIC BIOLOGY | Lipids | Gene expression regulation | Biosynthesis | Diatoms | Gene expression | Fatty acids | FATTY-ACID COMPOSITION | MARINE DIATOM | GLYCOLYTIC PATHWAY | MICROALGAE | MITOTIC CHROMOSOME | DARK CYCLE | CELL-CYCLE | NUTRIENT LIMITATION | CARBOHYDRATE-METABOLISM | PHYTOPLANKTON | PLANT SCIENCES | Oligonucleotide Array Sequence Analysis | Diatoms - genetics | Carbohydrate Metabolism - genetics | Gene Expression Profiling | Phylogeny | Pyruvate Dehydrogenase Complex - genetics | Mitosis - genetics | Acclimatization - radiation effects | Diatoms - metabolism | Glycolysis - genetics | Diatoms - radiation effects | Mitochondria - genetics | Membrane Transport Proteins - genetics | Mitochondria - radiation effects | Plastids - genetics | Lipid Metabolism - genetics | Plastids - metabolism | Carbon - metabolism | Mitosis - radiation effects | Carbon Cycle - genetics | Lipid Metabolism - radiation effects | Mitochondria - metabolism | Photoperiod | Pyruvate Dehydrogenase Complex - classification | Carbohydrate Metabolism - radiation effects | Gluconeogenesis - genetics | Gluconeogenesis - radiation effects | Membrane Transport Proteins - classification | Glycolysis - radiation effects | Gene Expression Regulation - radiation effects | Acclimatization - genetics | Plastids - radiation effects | Circadian rhythms | Physiological aspects | Acclimatization | Genetic aspects | Genetic regulation | Carbon | Index Medicus
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3. Full Text Establishment of Genetic Transformation in the Sexually Reproducing Diatoms Pseudo-nitzschia multistriata and Pseudo-nitzschia arenysensis and Inheritance of the Transgene
by Sabatino, Valeria and Russo, Monia Teresa and Patil, Shrikant and d’Ippolito, Giuliana and Fontana, Angelo and Ferrante, Maria Immacolata
Marine Biotechnology, ISSN 1436-2228, 8/2015, Volume 17, Issue 4, pp. 452 - 462
We report the genetic transformation of the planktonic diatoms Pseudo-nitzschia arenysensis and Pseudo-nitzschia multistriata, members of the widely... 
Life Sciences | Promoter | Transformation | Microbiology | Zoology | Pseudo-nitzschia | Freshwater & Marine Ecology | Genetic crosses | Engineering, general | Diatoms | SYSTEM | STABLE NUCLEAR TRANSFORMATION | MARKER | GENOME | P. ARENYSENSIS | PHAEODACTYLUM-TRICORNUTUM | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MARINE & FRESHWATER BIOLOGY | PLANTS | THALASSIOSIRA-PSEUDONANA | BACILLARIOPHYCEAE | MORPHOLOGY | Blotting, Southern | Diatoms - physiology | Species Specificity | Diatoms - genetics | Transgenes - genetics | Reproduction - genetics | Reproduction - physiology | DNA Primers - genetics | Green Fluorescent Proteins - genetics | Drug Resistance, Microbial - genetics | Promoter Regions, Genetic - genetics | Transformation, Genetic - genetics | Bleomycin | Histones - genetics | Biolistics - methods | Plasmids - genetics | Polymerase Chain Reaction | Inheritance Patterns - genetics | Transformation, Genetic - physiology | Microscopy, Fluorescence | Crosses, Genetic | Genetic research | Fluorescence | Analysis | Studies | Biotechnology | Mutagenesis | Biomass energy | Algae | Index Medicus
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4. Full Text A semi-synthetic organism that stores and retrieves increased genetic information
by Zhang, Yorke and Ptacin, Jerod L and Fischer, Emil C and Aerni, Hans R and Caffaro, Carolina E and San Jose, Kristine and Feldman, Aaron W and Turner, Court R and Romesberg, Floyd E
Nature, ISSN 0028-0836, 11/2017, Volume 551, Issue 7682, pp. 644 - 647
Since at least the last common ancestor of all life on Earth, genetic information has been stored in a four-letter alphabet that is propagated and retrieved by... 
PLATFORM | GREEN FLUORESCENT PROTEIN | CODE | MUTAGENESIS | CLICK CHEMISTRY | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | PURIFICATION | EXPANSION | PEPTIDE | PROTEOMICS | Anticodon - genetics | Diatoms - genetics | RNA, Messenger - genetics | Nucleoside Transport Proteins - genetics | Amino Acids - chemistry | Ribosomes - metabolism | Genes, Reporter - genetics | Green Fluorescent Proteins - genetics | Nucleoside Transport Proteins - metabolism | Amino Acids - genetics | Amino Acids - metabolism | Genetic Engineering | Base Pairing | Hydrogen Bonding | Escherichia coli - genetics | Synthetic Biology - methods | Escherichia coli - metabolism | Plasmids - genetics | RNA, Transfer - genetics | RNA, Messenger - chemistry | Green Fluorescent Proteins - chemistry | RNA, Transfer - chemistry | Biological research | Research | Genetically modified organisms | Biology, Experimental | Anticodons | Aminoacylation | Transcription | Hydrogen | Escherichia coli | Fluorescence | Amino acids | Organisms | Hydrogen bonding | Proteins | Cell growth | E coli | Synthetic biology | Bonding | Deoxyribonucleic acid--DNA | Hydrogen storage | Life on Earth | tRNA | Base pairs | Decoding | Chromatography | Plasmids | Green fluorescent protein | Proteomics | Scientific imaging | Codons | Mass spectrometry | Transporter | Index Medicus
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5. Full Text Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
by Hanno Teeling and Bernhard M. Fuchs and Dörte Becher and Christine Klockow and Antje Gardebrecht and Christin M. Bennke and Mariette Kassabgy and Sixing Huang and Alexander ]. Mann and Jost Waldmann and Marc Weber and Anna Klindworth and Andreas Otto and Jana Lange and Jörg Bernhardt and Christine Reinsch and Michael Hecker and Jörg Peplies and Frank D. Bockelmann and Ulrich Callies and Gunnar Gerdts and Antje Wichels and Karen H. Wiltshire and Frank Oliver Glöckner and Thomas Schweder and Rudolf Amann
Science, ISSN 0036-8075, 5/2012, Volume 336, Issue 6081, pp. 608 - 611
Phytoplankton blooms characterize temperate ocean margin zones in spring. We investigated the bacterioplankton response to a diatom bloom in the North Sea and... 
Phosphates | Metagenomics | Bacterioplankton | REPORTS | Gammaproteobacteria | Ecological succession | Bacteria | Phytoplankton | Bacteroidetes | Diatoms | Roseobacter | BACTERIAL COMMUNITY | TRANSPORT | CARBON | OCEAN | MULTIDISCIPLINARY SCIENCES | ORGANIC-MATTER | DYNAMICS | DEGRADATION | GAMMAPROTEOBACTERIUM | DIVERSITY | SP NOV | Sulfatases - genetics | Gammaproteobacteria - metabolism | Glycoside Hydrolases - genetics | North Sea | Bacteroidetes - enzymology | Alphaproteobacteria - growth & development | Diatoms - metabolism | Eutrophication | Alphaproteobacteria - enzymology | Phytoplankton - growth & development | Membrane Transport Proteins - genetics | Ecosystem | Phytoplankton - metabolism | Sulfatases - metabolism | Gammaproteobacteria - genetics | Membrane Transport Proteins - metabolism | Membrane Proteins - metabolism | Microbial Interactions | Gammaproteobacteria - enzymology | Seawater - microbiology | Membrane Proteins - genetics | Alphaproteobacteria - metabolism | Bacterial Proteins - genetics | Gammaproteobacteria - growth & development | Diatoms - growth & development | Phosphates - metabolism | Alphaproteobacteria - genetics | Bacteroidetes - metabolism | Bacterial Proteins - metabolism | Bacteroidetes - growth & development | Glycoside Hydrolases - metabolism | Bacteroidetes - genetics | Metagenome | Plankton | Phenetics | Physiological aspects | Environmental aspects | Genetic aspects | Biology | Research | Gene expression | Identification and classification | Marine biology | Microscopy | Algae | Index Medicus | Cycles | Uptakes | Scavengers | Marine | Coastal | Carbon | Transporter
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6. Full Text Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
by Hwan Su Yoon and Dana C. Price and Ramunas Stepanauskas and Veeran D. Rajah and Michael E. Sieracki and William H. Wilson and Eun Chan Yang and Siobain Duffy and Debashish Bhattacharya
Science, ISSN 0036-8075, 5/2011, Volume 332, Issue 6030, pp. 714 - 717
Whole-genome shotgun sequence data from three individual cells isolated from seawater, followed by analysis of ribosomal DNA, indicated that the cells... 
DNA | REPORTS | Ribosomal DNA | Viruses | Genomes | Eukaryotic cells | Diatoms | Bacteroidetes | Plastids | Cells | Plant cells | PHYLOGENY | EUKARYOTES | TIME | OCEAN | MULTIDISCIPLINARY SCIENCES | Plankton - classification | Eukaryota - classification | Molecular Sequence Data | DNA, Viral - analysis | Heterotrophic Processes | Aquatic Organisms - physiology | Phylogeny | DNA Viruses - genetics | DNA Viruses - isolation & purification | Likelihood Functions | Bacteria - classification | Plankton - genetics | Plastids - genetics | DNA, Bacterial - analysis | Plastids - metabolism | Aquatic Organisms - virology | DNA, Single-Stranded | Single-Cell Analysis | Eukaryota - virology | DNA, Ribosomal - genetics | Seawater | Plankton - physiology | Aquatic Organisms - genetics | Eukaryota - physiology | Cell Separation | Cell Communication | Plankton - virology | Bacteria - genetics | Aquatic Organisms - classification | Proteins - genetics | Bacteria - isolation & purification | Animals | DNA, Bacterial - genetics | Eukaryota - genetics | DNA Viruses - classification | Proteins - chemistry | DNA, Viral - genetics | Genome | Cell interaction | Genomics | Physiological aspects | Research | Observations | Properties | Protista | DNA viruses | Marine biology | Bacteria | Cellular biology | Deoxyribonucleic acid--DNA | Index Medicus
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7. Full Text PlantRNA, a database for tRNAs of photosynthetic eukaryotes
by Cognat, Valérie and Pawlak, Gaël and Duchêne, Anne-Marie and Daujat, Magali and Gigant, Anaïs and Salinas, Thalia and Michaud, Morgane and Gutmann, Bernard and Giegé, Philippe and Gobert, Anthony and Maréchal-Drouard, Laurence
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D273 - D279
PlantRNA database (http://plantrna.ibmp.cnrs.fr/) compiles transfer RNA (tRNA) gene sequences retrieved from fully annotated plant nuclear, plastidial and... 
IMPORT | ARABIDOPSIS-THALIANA | ORIGIN | GENOME SEQUENCE | SYNTHETASES | EVOLUTION | ENZYMES | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENES | COMPILATION | LIFE | User-Computer Interface | Diatoms - genetics | RNA, Transfer - metabolism | Magnoliopsida - genetics | Genome, Plant | RNA, Plant - genetics | RNA, Plant - metabolism | Genome, Plastid | Phaeophyta - genetics | Bryopsida - genetics | Chlorophyta - genetics | Photosynthesis - genetics | Plants - genetics | Enzymes - genetics | RNA, Plant - chemistry | RNA, Transfer - genetics | Cyanophora - genetics | Genome, Mitochondrial | Internet | RNA, Transfer - chemistry | Stramenopiles - genetics | Databases, Nucleic Acid | Enzymes - metabolism | Index Medicus
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8. Full Text Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species
by Chong, Jasmine and Jackson, Christopher and Kim, Jong Im and Yoon, Hwan Su and Reyes-Prieto, Adrian
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 07/2014, Volume 76, Issue 1, pp. 181 - 188
Glaucophytes are the least studied of the three major Archaeplastida (Plantae ) lineages. It has been largely recognized that comprehensive investigations of... 
Cryptic species diversity | Glaucophyta | Glaucocystis | Archaeplastida | Cyanophora | MAXIMUM-LIKELIHOOD | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLASTIDS | CLASSIFICATION | SINGLE ORIGIN | EVOLUTIONARY BIOLOGY | EVOLUTION | RIBOSOMAL-RNA SEQUENCES | PHOTOSYNTHETIC EUKARYOTES | ALGAE | GENETICS & HEREDITY | HAPTOPHYTES | CRYPTOPHYTES | Diatoms - genetics | Genomics | Genome - genetics | Glaucophyta - genetics | Phylogeny | DNA Barcoding, Taxonomic | North America | Sequence Analysis, DNA | Chlorophyta - genetics | Cell Nucleus - genetics | Mitochondria - genetics | Genetic Markers - genetics | Cyanophora - cytology | Plastids - genetics | Cyanophora - genetics | Genetic Variation - genetics | Glaucophyta - cytology | Korea | Index Medicus
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9. Full Text Thylakoid luminal θ-carbonic anhydrase critical for growth and photosynthesis in the marine diatom Phaeodactylum tricornutum
by Sae Kikutani and Kensuke Nakajima and Chikako Nagasato and Yoshinori Tsuji and Ai Miyatake and Yusuke Mat
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2016, Volume 113, Issue 35, pp. 9828 - 9833
The algal pyrenoid is a large plastid body, where the majority of the CO₂-fixing enzyme, ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) resides, and... 
Cghr domain | Pyrenoid | concentrating mechanism | Marine diatom | Luminal carbonic anhydrase | CO2-concentrating mechanism | LOCALIZATION | luminal carbonic anhydrase | marine diatom | CGHR domain | MULTIDISCIPLINARY SCIENCES | BICARBONATE | FUNCTIONAL-CHARACTERIZATION | INDUCTION | CO2 CONCENTRATING MECHANISMS | INHIBITION | EVOLUTION | CHLAMYDOMONAS-REINHARDTII | pyrenoid | THALASSIOSIRA-PSEUDONANA | Diatoms - genetics | Carbonic Anhydrases - genetics | Ribulose-Bisphosphate Carboxylase - genetics | Recombinant Fusion Proteins - metabolism | Carbonic Anhydrases - metabolism | Thylakoids - ultrastructure | Cloning, Molecular | Escherichia coli - metabolism | Photosynthesis - physiology | Thylakoids - genetics | Algal Proteins - genetics | Carbon Cycle - physiology | Amino Acid Sequence | Gene Expression | Carbon Dioxide - metabolism | Genetic Vectors - chemistry | Diatoms - ultrastructure | Genetic Vectors - metabolism | Recombinant Fusion Proteins - chemistry | Diatoms - growth & development | Ribulose-Bisphosphate Carboxylase - metabolism | Sequence Alignment | Thylakoids - enzymology | Escherichia coli - genetics | Recombinant Fusion Proteins - genetics | Diatoms - enzymology | Kinetics | Algal Proteins - metabolism | Index Medicus | Biological Sciences
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10. Full Text Evolutionary genomics of the cold-Adapted diatom Fragilariopsis cylindrus
by Mock, Thomas and Otillar, Robert P and Strauss, Jan and McMullan, Mark and Paajanen, Pirita and Schmutz, Jeremy and Salamov, Asaf and Sanges, Remo and Toseland, Andrew and Ward, Ben J and Allen, Andrew E and Dupont, Christopher L and Frickenhaus, Stephan and Maumus, Florian and Veluchamy, Alaguraj and Wu, Taoyang and Barry, Kerrie W and Falciatore, Angela and Ferrante, Maria I and Fortunato, Antonio E and Glöckner, Gernot and Gruber, Ansgar and Hipkin, Rachel and Janech, Michael G and Kroth, Peter G and Leese, Florian and Lindquist, Erika A and Lyon, Barbara R and Martin, Joel and Mayer, Christoph and Parker, Micaela and Quesneville, Hadi and Raymond, James A and Uhlig, Christiane and Valas, Ruben E and Valentin, Klaus U and Worden, Alexandra Z and Armbrust, E. Virginia and Clark, Matthew D and Bowler, Chris and Green, Beverley R and Moulton, Vincent and Van Oosterhout, Cock and Grigoriev, Igor V and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Nature, ISSN 0028-0836, 01/2017, Volume 541, Issue 7638, pp. 536 - 540
The Southern Ocean houses a diverse and productive community of organisms(1,2). Unicellular eukaryotic diatoms are the main primary producers in this... 
ANTARCTIC SEA-ICE | MARKOV-MODELS | MAXIMUM-LIKELIHOOD | SOUTHERN-OCEAN | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | CLASSIFICATION | THALASSIOSIRA-PSEUDONANA | DIFFERENTIAL EXPRESSION ANALYSIS | PROTEIN DOMAINS | PHYTOPLANKTON | Darkness | Cold Temperature | Genetic Drift | Oceans and Seas | Carbon Dioxide - metabolism | Diatoms - genetics | Genomics | Genome - genetics | Mutation Rate | Gene Expression Profiling | Transcriptome - genetics | Phylogeny | Iron - metabolism | Freezing | Ice Cover | Diatoms - metabolism | Recombination, Genetic | Alleles | Acclimatization - genetics | Evolution, Molecular | Genetic aspects | Gene expression | Observations | Diatoms | Proteins | Haplotypes | Evolution | Genomes | Mutation | Metabolism | Zinc | Adaptation | Index Medicus | Life Sciences | BASIC BIOLOGICAL SCIENCES
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11. Full Text High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp
by Oliver Kilian and Christina S. E. Benemann and Krishna K. Niyogi and Bertrand Vick
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2011, Volume 108, Issue 52, pp. 21265 - 21269
Algae have reemerged as potential next-generation feedstocks for biofuels, but strain improvement and progress in algal biology research have been limited by... 
Polymerase chain reaction | Algae | Genomics | Nitrites | Homologous recombination | Nitrates | Genomes | Plants | Nitrogen | Biofuels | EUSTIGMATOPHYCEAE | GENE | CHLAMYDOMONAS-REINHARDTII | BIOFUEL PRODUCTION | DIATOM PHAEODACTYLUM-TRICORNUTUM | MULTIDISCIPLINARY SCIENCES | MICROALGAL BIOFUELS | EUKARYOTES | RED ALGA | GENOME | NUCLEAR TRANSFORMATION | Genetic Engineering - methods | Nitrite Reductases - genetics | Gene Transfer Techniques | Nitrate Reductases - genetics | Molecular Sequence Data | DNA Primers - genetics | Electroporation - methods | Gene Knockout Techniques | Sequence Analysis, DNA | Transformation, Genetic - genetics | Base Sequence | Homologous Recombination - genetics | Microalgae - genetics | Industrial Microbiology - methods | Stramenopiles - genetics | Physiological aspects | Research | Biomass energy | Plant biology | Biotechnology | Eukaryotes | Biodiesel fuels | Index Medicus | Transformation | Nitrate | Oil | homologous recombination | Nitrate reductase | Nitrite reductase | genomics | Nitrite | Biological Sciences
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12. Full Text The Genome of the Diatom Thalassiosira pseudonana: Ecology, Evolution, and Metabolism
by E. Virginia Armbrust and John A. Berges and Chris Bowler and Beverley R. Green and Diego Martinez and Nicholas H. Putnam and Shiguo Zhou and Andrew E. Allen and Kirk E. Apt and Michael Bechner and Mark A. Brzezinski and Balbir K. Chaal and Anthony Chiovitti and Aubrey K. Davis and Mark S. Demarest and J. Chris Detter and Tijana Glavina and David Goodstein and Masood Z. Hadi and Uffe Hellsten and Mark Hildebrand and Bethany D. Jenkins and Jerzy Jurka and Vladimir V. Kapitonov and Nils Kröger and Winnie W. Y. Lau and Todd W. Lane and Frank W. Larimer and J. Casey Lippmeier and Susan Lucas and Mónica Medina and Anton Montsant and Miroslav Obornik and Micaela Schnitzler Parker and Brian Palenik and Gregory J. Pazour and Paul M. Richardson and Tatiana A. Rynearson and Mak A. Saito and David C. Schwartz and Kimberlee Thamatrakoln and Klaus Valentin and Assaf Vardi and Frances P. Wilkerson and Daniel S. Rokhsar and Joint Genome Institute (JGI)
Science, ISSN 0036-8075, 10/2004, Volume 306, Issue 5693, pp. 79 - 86
Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for ~20% of global carbon fixation. We report the 34... 
Proteins | Electrodes | Enzymes | Genes | Genomes | Plants | Diatoms | Eukaryotic cells | Plastids | Chromosomes | Research Article | WORLD OCEAN | POLYAMINES | PLASMODIUM-FALCIPARUM | NUCLEUS | MULTIDISCIPLINARY SCIENCES | MARINE DIATOMS | GENE-TRANSFER | SILICA | PROTEINS | PHYTOPLANKTON | FAMILY | Adaptation, Physiological | Light-Harvesting Protein Complexes - genetics | Silicic Acid - metabolism | Diatoms - genetics | Light-Harvesting Protein Complexes - metabolism | Algal Proteins - physiology | Molecular Sequence Data | Restriction Mapping | Diatoms - metabolism | Mitochondria - genetics | Ecosystem | Light | Algal Proteins - genetics | Plastids - genetics | Urea - metabolism | Diatoms - chemistry | Light-Harvesting Protein C