Journal of Medicinal Chemistry, ISSN 0022-2623, 11/2012, Volume 55, Issue 21, pp. 8997 - 9008
An attractive strategy to treat proteinopathies (diseases caused by malformed or misfolded proteins) is to restore protein function by inducing proper...
INCREASED TAU PHOSPHORYLATION | IN-VITRO | CHEMISTRY, MEDICINAL | E4 DOMAIN INTERACTION | TRAUMATIC BRAIN-INJURY | APOE GENOTYPE | ALZHEIMERS-DISEASE | MUTANT P53 | PHARMACOLOGICAL CHAPERONE | E EPSILON 4 | PARKINSONS-DISEASE | Proteostasis Deficiencies - metabolism | Apolipoprotein E4 - genetics | Apolipoprotein E4 - metabolism | Humans | Alzheimer Disease - drug therapy | Endoplasmic Reticulum - metabolism | Models, Molecular | Lipid Metabolism | Structure-Activity Relationship | Brain Injuries - metabolism | Molecular Targeted Therapy | Protein Transport | Animals | Protein Folding - drug effects | Alzheimer Disease - metabolism | Golgi Apparatus - metabolism | Protein Conformation | Neurons - metabolism | Proteostasis Deficiencies - drug therapy | Apolipoprotein E4 - chemistry | Index Medicus | cholesterol transport | lysosomal storage diseases | neurotoxicity | Alzheimer’s disease | neurotoxic fragments | cystic fibrosis | apoE | ER stress | mitochondrial dysfunction | proteinopathies | p53
INCREASED TAU PHOSPHORYLATION | IN-VITRO | CHEMISTRY, MEDICINAL | E4 DOMAIN INTERACTION | TRAUMATIC BRAIN-INJURY | APOE GENOTYPE | ALZHEIMERS-DISEASE | MUTANT P53 | PHARMACOLOGICAL CHAPERONE | E EPSILON 4 | PARKINSONS-DISEASE | Proteostasis Deficiencies - metabolism | Apolipoprotein E4 - genetics | Apolipoprotein E4 - metabolism | Humans | Alzheimer Disease - drug therapy | Endoplasmic Reticulum - metabolism | Models, Molecular | Lipid Metabolism | Structure-Activity Relationship | Brain Injuries - metabolism | Molecular Targeted Therapy | Protein Transport | Animals | Protein Folding - drug effects | Alzheimer Disease - metabolism | Golgi Apparatus - metabolism | Protein Conformation | Neurons - metabolism | Proteostasis Deficiencies - drug therapy | Apolipoprotein E4 - chemistry | Index Medicus | cholesterol transport | lysosomal storage diseases | neurotoxicity | Alzheimer’s disease | neurotoxic fragments | cystic fibrosis | apoE | ER stress | mitochondrial dysfunction | proteinopathies | p53
Journal Article
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Crystal Structure of a Complex between the Catalytic and Regulatory (RIα) Subunits of PKA
Science, ISSN 0036-8075, 2/2005, Volume 307, Issue 5710, pp. 690 - 696
The 2.0-angstrom structure of the cyclic adenosine monophosphate (cAMP)-dependent protein kinase (PKA) catalytic subunit bound to a deletion mutant of a...
Phosphates | Proteins | Solvents | Docks | Phosphorylation | Active sites | Drug regulation | Biochemistry | Research Articles | Binding sites | Crystal structure | PHOSPHORYLASE-KINASE | AMIDE H/H-2 EXCHANGE | MECHANISM | CAMP-BINDING DOMAINS | MULTIDISCIPLINARY SCIENCES | RESOLUTION | SITES | DEPENDENT PROTEIN-KINASE | MONOPHOSPHATE | CLASSIFICATION | MOLECULAR-BASIS | Cyclic AMP-Dependent Protein Kinases - metabolism | Protein Structure, Tertiary | Catalytic Domain | Protein Structure, Secondary | Crystallization | Cyclic AMP-Dependent Protein Kinases - chemistry | Models, Molecular | Tryptophan - chemistry | Crystallography, X-Ray | Hydrogen Bonding | Cyclic AMP-Dependent Protein Kinase RIalpha Subunit | Protein Structure, Quaternary | Hydrophobic and Hydrophilic Interactions | Protein Binding | Protein Conformation | Cyclic AMP-Dependent Protein Kinases - antagonists & inhibitors | Enzyme Activation | Binding Sites | Cyclic AMP - metabolism | Tyrosine - chemistry | Research | Structure | Cells | Crystals | Enzymes | Mutation | Catalysts
Phosphates | Proteins | Solvents | Docks | Phosphorylation | Active sites | Drug regulation | Biochemistry | Research Articles | Binding sites | Crystal structure | PHOSPHORYLASE-KINASE | AMIDE H/H-2 EXCHANGE | MECHANISM | CAMP-BINDING DOMAINS | MULTIDISCIPLINARY SCIENCES | RESOLUTION | SITES | DEPENDENT PROTEIN-KINASE | MONOPHOSPHATE | CLASSIFICATION | MOLECULAR-BASIS | Cyclic AMP-Dependent Protein Kinases - metabolism | Protein Structure, Tertiary | Catalytic Domain | Protein Structure, Secondary | Crystallization | Cyclic AMP-Dependent Protein Kinases - chemistry | Models, Molecular | Tryptophan - chemistry | Crystallography, X-Ray | Hydrogen Bonding | Cyclic AMP-Dependent Protein Kinase RIalpha Subunit | Protein Structure, Quaternary | Hydrophobic and Hydrophilic Interactions | Protein Binding | Protein Conformation | Cyclic AMP-Dependent Protein Kinases - antagonists & inhibitors | Enzyme Activation | Binding Sites | Cyclic AMP - metabolism | Tyrosine - chemistry | Research | Structure | Cells | Crystals | Enzymes | Mutation | Catalysts
Journal Article
Annals of the New York Academy of Sciences, ISSN 0077-8923, 01/2013, Volume 1277, Issue 1, pp. 91 - 104
β‐Lactam antibiotics are the most commonly used antibacterial agents and growing resistance to these drugs is a concern. Metallo‐β‐lactamases are a diverse set...
carbapenem | antibiotic resistance | β‐lactamase | zinc metallo‐enzyme | Carbapenem | Zinc metallo-enzyme | β-lactamase | Antibiotic resistance | ACTIVE-SITE | zinc metallo-enzyme | CRYSTAL-STRUCTURE | ANTIBIOTIC-RESISTANCE | SITE-DIRECTED MUTAGENESIS | BACTEROIDES-FRAGILIS | PSEUDOMONAS-AERUGINOSA | PENICILLIN-BINDING PROTEINS | PHARMACOLOGY & PHARMACY | beta-lactamase | BACILLUS-CEREUS | STANDARD NUMBERING SCHEME | BACTERIAL-CELL WALL | beta-Lactamases - chemistry | Catalytic Domain | beta-Lactamases - classification | Mutagenesis | Metalloendopeptidases - chemistry | Protein Binding | Substrate Specificity | Metalloendopeptidases - metabolism | Catalysis | Metalloendopeptidases - classification | beta-Lactamases - metabolism | Drugs | Enzymes | Inhibitors | Genes | Blocking | Bacteria | Antiinfectives and antibacterials | Zinc
carbapenem | antibiotic resistance | β‐lactamase | zinc metallo‐enzyme | Carbapenem | Zinc metallo-enzyme | β-lactamase | Antibiotic resistance | ACTIVE-SITE | zinc metallo-enzyme | CRYSTAL-STRUCTURE | ANTIBIOTIC-RESISTANCE | SITE-DIRECTED MUTAGENESIS | BACTEROIDES-FRAGILIS | PSEUDOMONAS-AERUGINOSA | PENICILLIN-BINDING PROTEINS | PHARMACOLOGY & PHARMACY | beta-lactamase | BACILLUS-CEREUS | STANDARD NUMBERING SCHEME | BACTERIAL-CELL WALL | beta-Lactamases - chemistry | Catalytic Domain | beta-Lactamases - classification | Mutagenesis | Metalloendopeptidases - chemistry | Protein Binding | Substrate Specificity | Metalloendopeptidases - metabolism | Catalysis | Metalloendopeptidases - classification | beta-Lactamases - metabolism | Drugs | Enzymes | Inhibitors | Genes | Blocking | Bacteria | Antiinfectives and antibacterials | Zinc
Journal Article
The FEBS Journal, ISSN 1742-464X, 01/2013, Volume 280, Issue 1, pp. 302 - 318
Angiogenin (Ang) is a potent inducer of neovascularization. Point mutations in human Ang have been linked to cancer progression and two neurodegenerative...
crystal structure | angiogenin | enzyme mechanism | metal‐ion binding | ribonuclease A | metal-ion binding | PROTEIN | VARIANTS | RECOGNITION | ACTIVE-SITE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TUMOR | IDENTIFICATION | REFINEMENT | TARGETING SIGNAL | PLACENTAL RIBONUCLEASE INHIBITOR | BINDING | Amino Acid Sequence | Catalytic Domain | Protein Structure, Secondary | Ribonucleases - chemistry | Humans | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | RNA Cleavage | Nuclear Localization Signals | Ribonuclease, Pancreatic - chemistry | Zinc - chemistry | Hydrogen Bonding | Sulfates - chemistry | Protein Binding | Protein Interaction Domains and Motifs | Structural Homology, Protein | RNA, Transfer - chemistry | Nervous system diseases | Parkinson's disease | Crystals | Development and progression | Ribonuclease | Sulfates | Structure | Investigations | Mutagenesis | Neurodegeneration | Crystal structure | Cancer | Original
crystal structure | angiogenin | enzyme mechanism | metal‐ion binding | ribonuclease A | metal-ion binding | PROTEIN | VARIANTS | RECOGNITION | ACTIVE-SITE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TUMOR | IDENTIFICATION | REFINEMENT | TARGETING SIGNAL | PLACENTAL RIBONUCLEASE INHIBITOR | BINDING | Amino Acid Sequence | Catalytic Domain | Protein Structure, Secondary | Ribonucleases - chemistry | Humans | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | RNA Cleavage | Nuclear Localization Signals | Ribonuclease, Pancreatic - chemistry | Zinc - chemistry | Hydrogen Bonding | Sulfates - chemistry | Protein Binding | Protein Interaction Domains and Motifs | Structural Homology, Protein | RNA, Transfer - chemistry | Nervous system diseases | Parkinson's disease | Crystals | Development and progression | Ribonuclease | Sulfates | Structure | Investigations | Mutagenesis | Neurodegeneration | Crystal structure | Cancer | Original
Journal Article
Plant Physiology, ISSN 0032-0889, 7/2010, Volume 153, Issue 3, pp. 895 - 905
Lignin | Transcription factors | Cell walls | Genes | Biosynthesis | Update on Lignin Biosynthesis and Structure | Plants | Polymers | Monomers | Alcohols | Plant cells | DOMAIN TRANSCRIPTION FACTOR | ARABIDOPSIS-THALIANA | SECONDARY METABOLISM | O-METHYLTRANSFERASE ACTIVITY | CINNAMYL-ALCOHOL-DEHYDROGENASE | PHENYLPROPANOID METABOLISM | CELL-WALL FORMATION | DOWN-REGULATION | FERULATE 5-HYDROXYLASE | CAD-DEFICIENT | PLANT SCIENCES | Lignin - chemistry | Lignin - biosynthesis | Biological Transport | Metabolic Networks and Pathways | Gene Expression Regulation, Plant | Evolution, Molecular | Research | Properties | Phytochemistry
Journal Article
Cold Spring Harbor Perspectives in Biology, ISSN 1943-0264, 07/2011, Volume 3, Issue 7, pp. 1 - 2
Pre-mRNA splicing is catalyzed by the spliceosome, a multimegadalton ribonucleoprotein (RNP) complex comprised of five snRNPs and numerous proteins. Intricate...
GROUP-II INTRON | SMALL NUCLEAR-RNA | CRYSTAL-STRUCTURE | DEXD/H-BOX ATPASE | ELECTRON-MICROSCOPY | SPLICING SIGNAL INTERACTIONS | TRI-SNRNP | U2 SNRNA | CATALYTIC STEPS | PRE-MESSENGER-RNA | CELL BIOLOGY | Protein Structure, Tertiary | Spliceosomes - chemistry | Catalytic Domain | Humans | Spliceosomes - physiology | Ribonucleoproteins - physiology | Models, Molecular | Crystallography, X-Ray | Spliceosomes - ultrastructure | RNA Splicing - physiology | Ribonucleoproteins, Small Nuclear - physiology | Nuclear Magnetic Resonance, Biomolecular | RNA Precursors - metabolism | Models, Genetic | Protein Processing, Post-Translational | Ribonucleoproteins, Small Nuclear - chemistry | Ribonucleoproteins - chemistry | Nucleic Acid Conformation | Concepts | 052
GROUP-II INTRON | SMALL NUCLEAR-RNA | CRYSTAL-STRUCTURE | DEXD/H-BOX ATPASE | ELECTRON-MICROSCOPY | SPLICING SIGNAL INTERACTIONS | TRI-SNRNP | U2 SNRNA | CATALYTIC STEPS | PRE-MESSENGER-RNA | CELL BIOLOGY | Protein Structure, Tertiary | Spliceosomes - chemistry | Catalytic Domain | Humans | Spliceosomes - physiology | Ribonucleoproteins - physiology | Models, Molecular | Crystallography, X-Ray | Spliceosomes - ultrastructure | RNA Splicing - physiology | Ribonucleoproteins, Small Nuclear - physiology | Nuclear Magnetic Resonance, Biomolecular | RNA Precursors - metabolism | Models, Genetic | Protein Processing, Post-Translational | Ribonucleoproteins, Small Nuclear - chemistry | Ribonucleoproteins - chemistry | Nucleic Acid Conformation | Concepts | 052
Journal Article
Annual Review of Biophysics, ISSN 1936-122X, 6/2011, Volume 40, Issue 1, pp. 169 - 186
Actin is the most abundant protein in most eukaryotic cells. It is highly conserved and participates in more protein-protein interactions than any known...
X-ray crystallography | electron microscopy | fiber diffraction | actin-binding-proteins | F-ACTIN | FILAMENT ELONGATION | I COMPLEX | CRYSTAL-STRUCTURE | ARP2/3 COMPLEX | DYNAMIC INSTABILITY | ELECTRON CRYOMICROSCOPY | BIOPHYSICS | BINDING PROTEINS | FORMIN HOMOLOGY-2 DOMAIN | WH2 DOMAIN | Models, Chemical | Models, Biological | Computer Simulation | Actins - chemistry | Actins - ultrastructure | Models, Molecular | Protein Binding | Protein Conformation | Structure-Activity Relationship | Actins - physiology | Binding Sites | Physiological aspects | Eukaryotes | Research | Actin | Protein-protein interactions
X-ray crystallography | electron microscopy | fiber diffraction | actin-binding-proteins | F-ACTIN | FILAMENT ELONGATION | I COMPLEX | CRYSTAL-STRUCTURE | ARP2/3 COMPLEX | DYNAMIC INSTABILITY | ELECTRON CRYOMICROSCOPY | BIOPHYSICS | BINDING PROTEINS | FORMIN HOMOLOGY-2 DOMAIN | WH2 DOMAIN | Models, Chemical | Models, Biological | Computer Simulation | Actins - chemistry | Actins - ultrastructure | Models, Molecular | Protein Binding | Protein Conformation | Structure-Activity Relationship | Actins - physiology | Binding Sites | Physiological aspects | Eukaryotes | Research | Actin | Protein-protein interactions
Journal Article
Acta Crystallographica Section D, ISSN 1399-0047, 05/2014, Volume 70, Issue 5, pp. 1366 - 1374
Geobacillus thermoglucosidasius is a thermophilic bacterium that is able to ferment both C6 and C5 sugars to produce ethanol. During growth on hemicellulose...
β‐xylosidase | GH family 52 | Geobacillus thermoglucosidasius | fold conservation | retaining mechanism | thermophile | β-xylosidase | CRYSTALLOGRAPHY | BIOPHYSICS | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | Catalytic Domain | Disaccharides - metabolism | Escherichia coli - genetics | Xylosidases - metabolism | Cloning, Molecular | Xylosidases - chemistry | Xylosidases - genetics | Models, Molecular | Crystallography, X-Ray | Protein Conformation | Geobacillus - enzymology | Disaccharides - chemistry | Enzymes | Addition polymerization | Similarity | Glycosides | Ethyl alcohol | Biomass | Crystal structure | Recombinant
β‐xylosidase | GH family 52 | Geobacillus thermoglucosidasius | fold conservation | retaining mechanism | thermophile | β-xylosidase | CRYSTALLOGRAPHY | BIOPHYSICS | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | Catalytic Domain | Disaccharides - metabolism | Escherichia coli - genetics | Xylosidases - metabolism | Cloning, Molecular | Xylosidases - chemistry | Xylosidases - genetics | Models, Molecular | Crystallography, X-Ray | Protein Conformation | Geobacillus - enzymology | Disaccharides - chemistry | Enzymes | Addition polymerization | Similarity | Glycosides | Ethyl alcohol | Biomass | Crystal structure | Recombinant
Journal Article
Science, ISSN 0036-8075, 08/2016, Volume 353, Issue 6302, pp. 904 - 912
Pre-messenger RNA (pre-mRNA) splicing is carried out by the spliceosome, which undergoes an intricate assembly and activation process. Here, we report an...
RNA Precursors - chemistry | Spliceosomes - chemistry | Catalytic Domain | Exons | Introns | RNA-Binding Proteins - chemistry | RNA Splicing Factors - chemistry | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | RNA Splicing | RNA, Small Nuclear - chemistry | Ribonucleoprotein, U5 Small Nuclear - chemistry | Saccharomyces cerevisiae Proteins - chemistry | Genetic aspects | Spliceosomes | Brewer's yeast | Methods | RNA splicing | Proteins | Eukaryotes | Yeast | Catalysis | Microscopy | Ribonucleic acid--RNA
RNA Precursors - chemistry | Spliceosomes - chemistry | Catalytic Domain | Exons | Introns | RNA-Binding Proteins - chemistry | RNA Splicing Factors - chemistry | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | RNA Splicing | RNA, Small Nuclear - chemistry | Ribonucleoprotein, U5 Small Nuclear - chemistry | Saccharomyces cerevisiae Proteins - chemistry | Genetic aspects | Spliceosomes | Brewer's yeast | Methods | RNA splicing | Proteins | Eukaryotes | Yeast | Catalysis | Microscopy | Ribonucleic acid--RNA
Journal Article