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Molecular cell, ISSN 1097-2765, 2009, Volume 36, Issue 1, pp. 39 - 50
In the largest E3 ligase subfamily, Cul3 binds a BTB domain, and an associated protein-interaction domain such as MATH recruits substrates for ubiquitination... 
PROTEINS | ACTIVATION | PROTEIN | NRF2 | BIOCHEMISTRY & MOLECULAR BIOLOGY | SCF | ADAPTER | DEGRADATION | KEAP1 | DIMERIZATION | BTB DOMAIN | HEDGEHOG | CELL BIOLOGY | Transcription Factors - chemistry | Humans | Crystallography, X-Ray | Drosophila Proteins - metabolism | Mutation - physiology | Protein Multimerization - physiology | Protein Structure, Quaternary - physiology | Ubiquitination - physiology | Peptide Fragments - genetics | Repressor Proteins - metabolism | Amino Acid Sequence | Ubiquitin-Protein Ligases - metabolism | Models, Molecular | Repressor Proteins - genetics | Recombinant Fusion Proteins - chemistry | Nuclear Proteins - chemistry | Ubiquitin-Protein Ligases - chemistry | DNA-Binding Proteins - chemistry | Cullin Proteins - chemistry | Peptide Fragments - chemistry | Phosphoprotein Phosphatases - genetics | Consensus Sequence - physiology | Recombinant Fusion Proteins - genetics | Histones - metabolism | Ubiquitin-Protein Ligases - genetics | Drosophila melanogaster | Phosphoprotein Phosphatases - chemistry | Protein Binding - physiology | Adaptor Proteins, Signal Transducing - chemistry | Histones - chemistry | Protein Interaction Domains and Motifs - physiology | Phosphoprotein Phosphatases - metabolism | Recombinant Fusion Proteins - metabolism | DNA-Binding Proteins - metabolism | Cullin Proteins - metabolism | Nuclear Proteins - genetics | Peptide Fragments - metabolism | Repressor Proteins - chemistry | Nuclear Proteins - metabolism | Drosophila Proteins - chemistry | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Cullin Proteins - genetics | Transcription Factors - metabolism | Animals | Histones - genetics | Adaptor Proteins, Signal Transducing - genetics | Drosophila Proteins - genetics | Adaptor Proteins, Signal Transducing - metabolism | Ubiquitin | Chromatin | Phosphatases | Ligases | CHROMATIN | BASIC BIOLOGICAL SCIENCES | SUBSTRATES | FLEXIBILITY | GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE | LIGASES | DIMERS | PHOSPHATASES
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 2011, Volume 108, Issue 19, pp. 8003 - 8008
.... By combining cryoelectron microscopy analysis with a characterization of NS1 amphipathic properties, we show that the secreted NS1 hexamer forms a lipoprotein particle with an open-barrel protein... 
Molecules | Lipoproteins | Secretion | Dengue | HDL lipoproteins | Lipids | Triglycerides | Dengue virus | Detergents | Fatty acids | Amphiphilic proteins | Dengue hemorrhagic fever | Arbovirus | amphiphilic proteins | CELLS | RNA | FORM | GLYCOPROTEIN NS1 | MULTIDISCIPLINARY SCIENCES | arbovirus | PATHOGENESIS | dengue hemorrhagic fever | secretion | LIPID PROFILE | ENCEPHALITIS | WEST-NILE | FEVER | REVEALS | Cell Line | Protein Subunits | Recombinant Proteins - ultrastructure | Drosophila | Humans | Protein Multimerization | Dengue Virus - ultrastructure | Cercopithecus aethiops | Models, Molecular | Recombinant Proteins - chemistry | Dengue Virus - chemistry | Cryoelectron Microscopy | Lipoproteins, HDL - ultrastructure | Viral Nonstructural Proteins - chemistry | Animals | Computer Simulation | HEK293 Cells | Protein Structure, Quaternary | Lipoproteins, HDL - chemistry | Nuclear Magnetic Resonance, Biomolecular | Imaging, Three-Dimensional | Viral Nonstructural Proteins - ultrastructure | Vero Cells | Dengue viruses | Genetic aspects | Lipid metabolism | Viral Nonstructural Proteins/ultrastructure | Lipoproteins, HDL/ultrastructure | Life Sciences | Recombinant Proteins/chemistry | Lipoproteins, HDL/chemistry | Viral Nonstructural Proteins/chemistry | Dengue Virus/ultrastructure | Dengue Virus/chemistry | Recombinant Proteins/ultrastructure | Microbiology and Parasitology | Biological Sciences
Journal Article
PLoS computational biology, ISSN 1553-7358, 2006, Volume 2, Issue 8, pp. e100 - 0901
Recent proteome-wide screening approaches have provided a wealth of information about interacting proteins in various organisms... 
UNSTRUCTURED PROTEINS | DATABASE | RECOGNITION | PROTEOME | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | INTERACTION MAP | PREDICTIONS | INTERACTION NETWORKS | GENE ONTOLOGY | SACCHAROMYCES-CEREVISIAE | BINDING | Caenorhabditis elegans - chemistry | ELAV-Like Protein 2 | Drosophila Proteins - classification | Saccharomyces cerevisiae - genetics | Caenorhabditis elegans Proteins - chemistry | Humans | Ligases - genetics | Amino Acids - chemistry | Caenorhabditis elegans Proteins - metabolism | ELAV Proteins - classification | Ligases - chemistry | Drosophila Proteins - metabolism | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | Saccharomyces cerevisiae - metabolism | Ligases - classification | Carrier Proteins - chemistry | ELAV Proteins - chemistry | Carrier Proteins - classification | Protein Structure, Tertiary | Saccharomyces cerevisiae Proteins - classification | Caenorhabditis elegans - metabolism | Caenorhabditis elegans - genetics | Computational Biology | ELAV Proteins - metabolism | Ligases - metabolism | Models, Molecular | Drosophila Proteins - chemistry | Saccharomyces cerevisiae Proteins - genetics | Saccharomyces cerevisiae - chemistry | Carrier Proteins - genetics | Caenorhabditis elegans Proteins - classification | Animals | Carrier Proteins - metabolism | Drosophila melanogaster - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Drosophila Proteins - genetics | Caenorhabditis elegans Proteins - genetics | ELAV Proteins - genetics | Saccharomyces cerevisiae Proteins - chemistry | Eukaryotes | Genetic aspects | Brewer's yeast | Analysis | Drosophila | Proteins | Confidence intervals | Genetics | Hypotheses | Organisms | Network hubs | Caenorhabditis | Bioinformatics - Computational Biology | Saccharomyces | Homo (Human) | Molecular Biology - Structural Biology
Journal Article
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2004, Volume 303, Issue 5657, pp. 495 - 499
.... From this, we predict that BAR domains are in many protein families, including sorting nexins, centaurins, and oligophrenins... 
Proteins | String theory | Drosophila | Liver | Lipids | Cell membranes | Dimers | Liposomes | Curvature | Research Article | P branes | CLATHRIN-MEDIATED ENDOCYTOSIS | ADP-RIBOSYLATION FACTORS | LYSOPHOSPHATIDIC ACID | TERMINAL DOMAIN | DROSOPHILA AMPHIPHYSIN | SYNAPTIC VESICLE ENDOCYTOSIS | MULTIDISCIPLINARY SCIENCES | ACTIN CYTOSKELETON | GTPASE-ACTIVATING PROTEIN | BINDING | SH3 DOMAIN | Cytoskeletal Proteins | Coated Vesicles - metabolism | Drosophila - chemistry | Molecular Sequence Data | Crystallography, X-Ray | GTPase-Activating Proteins - metabolism | Drosophila Proteins - metabolism | Phosphoproteins - metabolism | Clathrin-Coated Vesicles - metabolism | Phosphoproteins - chemistry | Cell Membrane - chemistry | Coated Vesicles - chemistry | Nerve Tissue Proteins - chemistry | Carrier Proteins - chemistry | Cell Membrane - metabolism | ADP-Ribosylation Factors - metabolism | ADP-Ribosylation Factors - genetics | Dimerization | Protein Structure, Tertiary | Amino Acid Sequence | Protein Structure, Secondary | COP-Coated Vesicles - metabolism | Models, Molecular | Nuclear Proteins - metabolism | Drosophila Proteins - chemistry | GTPase-Activating Proteins - chemistry | Nuclear Proteins - chemistry | Nerve Tissue Proteins - genetics | Clathrin - metabolism | Nerve Tissue Proteins - metabolism | Carrier Proteins - genetics | ADP-Ribosylation Factors - chemistry | Adaptor Proteins, Signal Transducing | Liposomes - chemistry | Animals | Carrier Proteins - metabolism | Protein Binding | Liposomes - metabolism | Mutation | Synapses | Chemical properties | Membranes | Yeast | Cellular biology | Cells
Journal Article
Nature (London), ISSN 1476-4687, 2004, Volume 431, Issue 7010, pp. 873 - 878
.... The complex, termed hPRC1L (human Polycomb repressive complex 1-like), is composed of several Polycomb-group proteins including Ring1, Ring2, Bmi1 and HPH2... 
CORE | RECRUITMENT | TRANSCRIPTIONAL ACTIVATION | COMPLEX | LIGASE ACTIVITY | MULTIDISCIPLINARY SCIENCES | RAD6 | H3 LYSINE-27 METHYLATION | UBIQUITYLATION | RING FINGER PROTEINS | DROSOPHILA | Nuclear Proteins - isolation & purification | Nucleosomes - chemistry | Humans | Multiprotein Complexes | Ubiquitin - metabolism | Molecular Sequence Data | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | Protein Subunits - metabolism | DNA-Binding Proteins - metabolism | Protein Subunits - isolation & purification | Repressor Proteins - isolation & purification | Response Elements - genetics | Nuclear Proteins - genetics | Proto-Oncogene Proteins - isolation & purification | Repressor Proteins - metabolism | Protein Subunits - genetics | Proto-Oncogene Proteins - metabolism | Amino Acid Sequence | Cell Line | Catalytic Domain | Repressor Proteins - chemistry | Gene Silencing | Ubiquitin-Protein Ligases - metabolism | Nucleosomes - metabolism | Repressor Proteins - genetics | Nuclear Proteins - metabolism | Proto-Oncogene Proteins - genetics | Polycomb-Group Proteins | Transcription Factors - genetics | DNA-Binding Proteins - genetics | DNA-Binding Proteins - isolation & purification | Ubiquitin-Protein Ligases - chemistry | DNA-Binding Proteins - chemistry | Homeodomain Proteins - genetics | Transcription Factors - metabolism | Polycomb Repressive Complex 2 | Animals | Polycomb Repressive Complex 1 | Transcription Factors - isolation & purification | Ubiquitin-Protein Ligases - isolation & purification | Protein Subunits - chemistry | Drosophila Proteins - genetics | HeLa Cells | Histones - metabolism | Ubiquitin-Protein Ligases - genetics | Proteins | Enzymes | Cell culture | Chromatin | Biochemistry
Journal Article
BMC evolutionary biology, ISSN 1471-2148, 2007, Volume 7, Issue 1, pp. 103 - 103
Background: Septins are cytoskeletal GTPase proteins first discovered in the fungus Saccharomyces cerevisiae where they organize the septum and link nuclear division with cell division... 
P-LOOP | ORGANIZATION | PHYLOGENY | EVOLUTIONARY BIOLOGY | YEAST SEPTINS | GENE | SEQUENCE | GENETICS & HEREDITY | IDENTIFICATION | SACCHAROMYCES-CEREVISIAE | BINDING | COILED COILS | Consensus Sequence | Fungal Proteins - chemistry | Gene Duplication | Multigene Family | Species Specificity | Cytoskeletal Proteins - genetics | Caenorhabditis elegans Proteins - chemistry | Humans | Cell Cycle Proteins - classification | Phylogeny | Protozoan Proteins - genetics | Fungi - genetics | Cell Cycle Proteins - chemistry | GTP Phosphohydrolases - chemistry | Profilins - genetics | Protein Isoforms - chemistry | Cell Cycle Proteins - genetics | Conserved Sequence | Microsporidia - genetics | Protozoan Proteins - chemistry | Microsporidia - enzymology | Protein Structure, Tertiary | Zebrafish Proteins - chemistry | Fungi - enzymology | Insect Proteins - genetics | Rats | Terminology as Topic | Cytoskeletal Proteins - chemistry | Cytoskeletal Proteins - classification | Drosophila Proteins - chemistry | Fungal Proteins - genetics | Saccharomyces cerevisiae Proteins - genetics | Fungal Proteins - classification | Sequence Homology, Amino Acid | Sequence Alignment | Animals | GTP Phosphohydrolases - genetics | Profilins - chemistry | GTP Phosphohydrolases - classification | Insect Proteins - chemistry | Mice | Drosophila Proteins - genetics | Zebrafish Proteins - genetics | Amino Acid Motifs - genetics | Caenorhabditis elegans Proteins - genetics | Evolution, Molecular | Protein Isoforms - genetics | Saccharomyces cerevisiae Proteins - chemistry | Amino acid sequence | Genetic aspects | Yeast fungi | Guanosine triphosphatase | Analysis
Journal Article
Molecular cell, ISSN 1097-2765, 2017, Volume 67, Issue 5, pp. 837 - 852.e7
.... Architectural proteins insulate compartmental domains by reducing interaction frequencies between neighboring regions in Drosophila, but CTCF loops do not play a distinct role in this organism... 
transcription | Hi-C | TAD | loop | compartment | CTCF | insulator | epigenetics | TOPOLOGY | SYSTEM | PROMOTERS | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | ARCHITECTURE | PROVIDES | DOMAINS | GENOME | CTCF SITES | REVEALS | CELL BIOLOGY | Chromatin - metabolism | Histones - chemistry | Caenorhabditis elegans Proteins - chemistry | Humans | Caenorhabditis elegans Proteins - metabolism | Structure-Activity Relationship | Drosophila Proteins - metabolism | Drosophila melanogaster - genetics | Arabidopsis Proteins - metabolism | Drosophila melanogaster - metabolism | DNA, Plant - chemistry | Computer Simulation | Transcription, Genetic | Nucleic Acid Conformation | DNA, Plant - genetics | Chromatin - chemistry | Arabidopsis Proteins - genetics | Caenorhabditis elegans - metabolism | Chromosomal Proteins, Non-Histone - metabolism | Caenorhabditis elegans - genetics | Chromatin Assembly and Disassembly | DNA - metabolism | Drosophila Proteins - chemistry | DNA, Plant - metabolism | Arabidopsis - metabolism | Chromosomal Proteins, Non-Histone - genetics | Arabidopsis - genetics | DNA - genetics | DNA - chemistry | Animals | Histones - genetics | Arabidopsis Proteins - chemistry | Models, Biological | Protein Conformation | Drosophila Proteins - genetics | Histones - metabolism | Caenorhabditis elegans Proteins - genetics | Chromatin - genetics | Chromosomal Proteins, Non-Histone - chemistry | Arabidopsis thaliana | Chromatin | Epigenetic inheritance
Journal Article
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2007, Volume 317, Issue 5843, pp. 1390 - 1393
Tricyclic antidepressants exert their pharmacological effect--inhibiting the reuptake of serotonin, norepinephrine, and dopamine--by directly blocking... 
Molecules | Salts | Neurotransmitters | Antidepressants | Reuptake | Serotonin plasma membrane transport proteins | Neurotransmitter transport proteins | Reports | Pharmacology | Inhibitory concentration 50 | Crystal structure | SENSITIVE DOPAMINE TRANSPORTER | NOREPINEPHRINE TRANSPORTERS | MULTIDISCIPLINARY SCIENCES | ION-BINDING | MONOAMINE TRANSPORTERS | SEROTONIN | INHIBITORS | Dopamine - chemistry | Antidepressive Agents, Tricyclic - metabolism | Caenorhabditis elegans Proteins - chemistry | Humans | Bacterial Proteins - chemistry | Caenorhabditis elegans Proteins - metabolism | Molecular Sequence Data | Crystallography, X-Ray | Serotonin - chemistry | Dopamine Uptake Inhibitors - metabolism | Drosophila Proteins - metabolism | Antidepressive Agents, Tricyclic - chemistry | Neurotransmitter Uptake Inhibitors - metabolism | Desipramine - metabolism | Conserved Sequence | Binding Sites | Dopamine - metabolism | Serotonin Uptake Inhibitors - metabolism | Amino Acid Sequence | Cell Line | Leucine - metabolism | Norepinephrine Plasma Membrane Transport Proteins - antagonists & inhibitors | Models, Molecular | Serotonin Uptake Inhibitors - chemistry | Drosophila Proteins - chemistry | Plasma Membrane Neurotransmitter Transport Proteins - metabolism | Leucine - chemistry | Sequence Homology, Amino Acid | Animals | Norepinephrine - metabolism | Desipramine - chemistry | Neurotransmitter Uptake Inhibitors - chemistry | Norepinephrine - chemistry | Serotonin - metabolism | Dopamine Uptake Inhibitors - chemistry | Protein Binding | Bacterial Proteins - metabolism | Plasma Membrane Neurotransmitter Transport Proteins - chemistry | Protein Conformation | Norepinephrine Plasma Membrane Transport Proteins - metabolism | Norepinephrine Plasma Membrane Transport Proteins - chemistry | Leucine | Structure | Desipramine | Health aspects | Antidepressants, Tricyclic | Inhibitor drugs | Psychiatry | Binding sites
Journal Article
PLoS genetics, ISSN 1553-7404, 2018, Volume 14, Issue 4, p. e1007339
.... Combining biochemistry, genetic tools to manipulate Axin and APC2... 
DISHEVELLED PROTEIN | PATHWAY ACTIVATION | AXIN | ADENOMATOUS POLYPOSIS-COLI | TUMOR-SUPPRESSOR APC | OVERLAPPING ROLES | DEP DOMAIN | NEGATIVE REGULATION | GENETICS & HEREDITY | DROSOPHILA APC2 | DIX DOMAIN | Wnt1 Protein - genetics | Drosophila melanogaster - embryology | Transcription Factors - chemistry | Axin Protein - genetics | Axin Protein - chemistry | Multiprotein Complexes - genetics | Wnt1 Protein - metabolism | Armadillo Domain Proteins - genetics | Drosophila Proteins - metabolism | RNA, Messenger - metabolism | Drosophila melanogaster - genetics | Recombinant Fusion Proteins - metabolism | Axin Protein - metabolism | Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome - metabolism | Drosophila melanogaster - metabolism | Multiprotein Complexes - metabolism | Proteolysis | Tumor Suppressor Proteins - chemistry | Tumor Suppressor Proteins - genetics | Transcription, Genetic | Wnt Signaling Pathway | Axin Signaling Complex - chemistry | Cell Line | Tumor Suppressor Proteins - metabolism | Animals, Genetically Modified | RNA, Messenger - genetics | Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome - genetics | Armadillo Domain Proteins - chemistry | Drosophila Proteins - chemistry | Recombinant Fusion Proteins - chemistry | Transcription Factors - genetics | Glycogen Synthase Kinase 3 - metabolism | Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome - chemistry | Transcription Factors - metabolism | Multiprotein Complexes - chemistry | Animals | Axin Signaling Complex - metabolism | Glycogen Synthase Kinase 3 - genetics | Axin Signaling Complex - genetics | Armadillo Domain Proteins - metabolism | Recombinant Fusion Proteins - genetics | Drosophila Proteins - genetics | Binding proteins | Wnt proteins | Health aspects | Stoichiometry | Phosphorylation | Wnt protein | Funding | Glycogen synthase | Genes | Homeostasis | Kinases | Proteins | β-catenin | Embryogenesis | Ubiquitination | Localization | Dishevelled protein | Glycogen | Polymerization | Curricula | Embryos | Adenomatous polyposis coli | Microscopy | Insects | Stem cells | Regulation | Genetic engineering | Molecular biology | Cancer
Journal Article
The EMBO journal, ISSN 0261-4189, 2011, Volume 30, Issue 12, pp. 2325 - 2335
.... Here, we report that induction of extra F‐actin formation, by loss of Capping proteins A or B, or caused by overexpression of an activated version of the formin Diaphanous, induced strong overgrowth in Drosophila imaginal discs... 
hippo signalling | F‐actin | growth regulation | F-actin | TISSUE-GROWTH | BIOCHEMISTRY & MOLECULAR BIOLOGY | YORKIE PHOSPHORYLATION | TEAD/TEF FAMILY | CELL BIOLOGY | REGULATE CELL-PROLIFERATION | SIGNALING PATHWAY | GENE-EXPRESSION | CONTACT INHIBITION | SIZE-CONTROL | TUMOR-SUPPRESSOR PATHWAY | PROMOTES APOPTOSIS | Wings, Animal - cytology | Cell Proliferation | Humans | Drosophila melanogaster - genetics | Actins - genetics | Drosophila Proteins - biosynthesis | Organ Specificity - genetics | Wings, Animal - growth & development | Tumor Suppressor Proteins - chemistry | Tumor Suppressor Proteins - genetics | Actins - chemistry | RNA Caps - antagonists & inhibitors | RNA Caps - chemistry | Intracellular Signaling Peptides and Proteins - genetics | Cytoskeleton - chemistry | RNA Caps - genetics | Actins - biosynthesis | Carrier Proteins - biosynthesis | Cells, Cultured | Cytoskeleton - genetics | Drosophila melanogaster - cytology | Protein-Serine-Threonine Kinases - genetics | Signal Transduction - genetics | Drosophila Proteins - chemistry | Carrier Proteins - genetics | Phenotype | Animals | Drosophila melanogaster - chemistry | Intracellular Signaling Peptides and Proteins - chemistry | Wings, Animal - chemistry | Protein-Serine-Threonine Kinases - chemistry | Drosophila Proteins - genetics | HeLa Cells | Proteins | Signal transduction | Tumors
Journal Article