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Nucleic Acids Research, ISSN 0305-1048, 01/2017, Volume 45, Issue 1, pp. D658 - D662
Chromatin immunoprecipitation, DNase I hypersensitivity and transposase-accessibility assays combined with high-throughput sequencing enable the genome-wide... 
CELLS | PROFILES | HUMAN GENOME | LANDSCAPE | ARCHIVE | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENE-EXPRESSION | UPDATE | QUALITY-CONTROL | TRANSCRIPTIONAL REGULATION | ENCODE | Index Medicus | Database Issue
Journal Article
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2014, Volume 42, Issue D1, pp. D1063 - D1069
textabstractHbVar (http://globin.bx.psu.edu/hbvar) is one of the oldest and most appreciated locus-specific databases launched in 2001 by a multi-center... 
MICROATTRIBUTION | DOMAIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | ENCODE DATA | Genetic Variation | Phenotype | Thalassemia - ethnology | Humans | Genotype | Hemoglobins - genetics | Internet | Mutation | Thalassemia - genetics | Databases, Nucleic Acid | Index Medicus | VI. Genomic variation, diseases and drugs
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2019, Volume 47, Issue D1, pp. D853 - D858
Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has... 
INTEGRATIVE ANALYSIS | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | ENCODE DATA | Database Issue
Journal Article
FEBS Journal, ISSN 1742-464X, 02/2008, Volume 275, Issue 3, pp. 527 - 535
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2019, Volume 47, Issue D1, pp. D729 - D735
Abstract The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin... 
CHIP-SEQ | ATLAS | ENCYCLOPEDIA | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | DNA ELEMENTS | ENHANCERS | CANCER | EXPRESSION | ENCODE | Database Issue
Journal Article
F1000Research, ISSN 2046-1402, 2015, Volume 4, pp. 121 - 121
Recently, the Mouse ENCODE Consortium reported that comparative gene expression data from human and mouse tend to cluster more by species rather than by... 
Evolutionary/Comparative Genetics | Developmental Molecular Mechanisms | Bioinformatics | Animal Genetics | Genomics
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1720, pp. 111 - 129
During the last decade, the study of mRNA decay has largely benefited from an increasing number of high-throughput assays that emerged from developments in... 
bash | eCLIP | Bioinformatics | RNAseq | ENCODE | mRNA decay | Python | Index Medicus
Journal Article
Frontiers in Genetics, ISSN 1664-8021, 2014, Volume 5, pp. 75 - 75
With the advent of ChIP-seq multiplexing technologies and the subsequent increase in ChIP-seq throughput, the development of working standards for the quality... 
ChIP-seq | QC | Duplicates | Blacklist | ChIP-exo | DESIGN | BINDING | GENOME | GENETICS & HEREDITY | ENCODE | duplicates
Journal Article
FEBS Letters, ISSN 0014-5793, 12/2015, Volume 589, Issue 24, pp. 3866 - 3870
Genome-wide data is accumulating in an unprecedented way in the public domain. Re-mining this data shows great potential to generate novel hypotheses. However... 
Chromatin immunoprecipitation sequencing | Transcription factor | Data integration | Encyclopaedia of DNA element | functional annotation of animal genomes | TFBS | University of California, Santa Cruz | Fraction of Reads in Peaks | FAANG | transcription factor binding site | ChIP | FPKM | chromatin immunoprecipitation | FRiP | TSS | ultraviolet | ChIP-seq | transcriptional start site | encyclopaedia of DNA elements | UCSC | ChIP followed by massively parallel sequencing | Fragments per Kilo base per Million | ENCODE | Chromatin immunoprecipitation | TRANSCRIPTION FACTORS | BIOPHYSICS | BIOCHEMISTRY & MOLECULAR BIOLOGY | BINDING | sequencing | FEATURES | CELL BIOLOGY | Transcription Factors - metabolism | Histone Deacetylase 2 - genetics | Reproducibility of Results | Chromatin Immunoprecipitation | Epigenesis, Genetic | Humans | K562 Cells | Databases, Genetic | Proto-Oncogene Proteins c-myc - genetics | Genomics - methods | Sequence Analysis, DNA | Case studies | Genomics | Analysis | Animal genetics | Epigenetic inheritance | Chromatin | Multiprocessing | Information management | Genetic transcription | Index Medicus | Life Sciences | ENCODE, encyclopaedia of DNA elements | UV, ultraviolet | FAANG, functional annotation of animal genomes | UCSC, University of California, Santa Cruz | ChIP-seq, ChIP followed by massively parallel sequencing | ChIP, chromatin immunoprecipitation | FRiP, Fraction of Reads in Peaks | TSS, transcriptional start site | FPKM, Fragments per Kilo base per Million | TFBS, transcription factor binding site
Journal Article
Journal Article