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1. Full Text The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming
by Mansour, Abed Alfatah and Gafni, Ohad and Weinberger, Leehee and Zviran, Asaf and Ayyash, Muneef and Rais, Yoach and Krupalnik, Vladislav and Zerbib, Mirie and Amann-Zalcenstein, Daniela and Maza, Itay and Geula, Shay and Viukov, Sergey and Holtzman, Liad and Pribluda, Ariel and Canaani, Eli and Horn-Saban, Shirley and Amit, Ido and Novershtern, Noa and Hanna, Jacob H
Nature, ISSN 0028-0836, 08/2012, Volume 488, Issue 7411, pp. 409 - 413
Induced pluripotent stem cells (iPSCs) can be derived from somatic cells by ectopic expression of different transcription factors, classically Oct4 (also known... 
JMJD3 | NETWORK | PLURIPOTENT GROUND-STATE | MULTIDISCIPLINARY SCIENCES | EMBRYONIC STEM-CELLS | MOUSE | DYNAMICS | NANOG | MODEL | GENOME | Embryonic Stem Cells - metabolism | Embryonic Stem Cells - cytology | Epigenesis, Genetic | Humans | Male | Histone Demethylases - genetics | Gene Knockdown Techniques | Nuclear Proteins - deficiency | HEK293 Cells | Fibroblasts | Female | Germ Cells - metabolism | Induced Pluripotent Stem Cells - cytology | Nuclear Proteins - genetics | Cellular Reprogramming - genetics | Induced Pluripotent Stem Cells - metabolism | Biocatalysis | Induced Pluripotent Stem Cells - enzymology | Transgenes - genetics | Embryonic Stem Cells - enzymology | Nuclear Proteins - metabolism | Germ Cells - enzymology | Mice, Knockout | Cell Lineage | Histone Demethylases - metabolism | Animals | Alleles | Mice | Histone Demethylases - deficiency | Cellular Reprogramming - physiology | Chimera | Physiological aspects | Enzymes | Epigenetic inheritance | Genetic aspects | Germ cells | Research | Proteins | Epigenetics | Cell culture | Genomes | Stem cells | Index Medicus
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2. Full Text Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo
by Jennifer Nichols and Jose Silva and Mila Roode and Austin Smith
Development, ISSN 0950-1991, 10/2009, Volume 136, Issue 19, pp. 3215 - 3222
Embryonic stem (ES) cells can be derived and propagated from multiple strains of mouse and rat through application of small-molecule inhibitors of the... 
Hypoblast | Mouse | Epiblast | Pluripotency | Blastocyst | Erk | STEM-CELLS | X-CHROMOSOME | EFFICIENT DERIVATION | MAMMALIAN DEVELOPMENT | DEVELOPMENTAL BIOLOGY | RAT BLASTOCYSTS | LINES | CELL SELF-RENEWAL | DIFFERENTIATION | TRANSCRIPTION FACTOR | ES CELLS | Embryonic Stem Cells - cytology | Extracellular Signal-Regulated MAP Kinases - antagonists & inhibitors | Male | Embryo Culture Techniques | Extracellular Signal-Regulated MAP Kinases - metabolism | Mice, Inbred CBA | Female | Benzamides - pharmacology | Germ Layers - cytology | Cell Differentiation - physiology | Germ Layers - enzymology | Germ Layers - drug effects | Pluripotent Stem Cells - cytology | Mice, Inbred C57BL | Blastocyst Inner Cell Mass - drug effects | Embryonic Development - physiology | Rats | Embryonic Stem Cells - enzymology | Pluripotent Stem Cells - enzymology | Blastocyst Inner Cell Mass - cytology | Blastocyst Inner Cell Mass - enzymology | Leukemia Inhibitory Factor - pharmacology | Pregnancy | Pyrroles - pharmacology | Animals | MAP Kinase Signaling System - drug effects | Embryonic Stem Cells - drug effects | Cell Differentiation - drug effects | Pluripotent Stem Cells - drug effects | Mice | Protein Kinase Inhibitors - pharmacology | Embryonic Development - drug effects | Index Medicus
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3. Full Text Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells
by Liao, Jing and Karnik, Rahul and Gu, Hongcang and Ziller, Michael J and Clement, Kendell and Tsankov, Alexander M and Akopian, Veronika and Gifford, Casey A and Donaghey, Julie and Galonska, Christina and Pop, Ramona and Reyon, Deepak and Tsai, Shengdar Q and Mallard, William and Joung, J Keith and Rinn, John L and Gnirke, Andreas and Meissner, Alexander
Nature Genetics, ISSN 1061-4036, 05/2015, Volume 47, Issue 5, pp. 469 - 478
DNA methylation is a key epigenetic modification involved in regulating gene expression and maintaining genomic integrity. Here we inactivated all three... 
HUMAN GENOME | DNA METHYLATION | EPIGENETIC MEMORY | GENETICS & HEREDITY | SELF-RENEWAL | MAMMALIAN DEVELOPMENT | SOMATIC TISSUE | HUMAN CANCER-CELLS | CPG METHYLATION | DE-NOVO METHYLATION | REGULATORY REGIONS | Catalytic Domain | Gene Expression | Cell Proliferation | Cell Survival | DNA (Cytosine-5-)-Methyltransferase 1 | Coculture Techniques | Epigenesis, Genetic | Humans | Cells, Cultured | Embryonic Stem Cells - enzymology | Gene Knockout Techniques | Embryonic Stem Cells - physiology | DNA (Cytosine-5-)-Methyltransferases - genetics | DNA Methylation | Animals | Base Sequence | CpG Islands | Cell Differentiation | Mice | Apoptosis | Genetic aspects | Methyltransferases | Embryonic stem cells | Gene expression | Properties | Health aspects | Studies | DNA methylation | Mutation | Stem cells | Index Medicus
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4. Full Text Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation
by Mayle, A and Yang, LB and Rodriguez, B and Zhou, T and Chang, E and Curry, CV and Challen, GA and Li, W and Wheeler, D and Rebel, VI and Goodell, MA
BLOOD, ISSN 0006-4971, 01/2015, Volume 125, Issue 4, pp. 629 - 638
DNA methyltransferase 3A (DNMT3A) is mutated in hematologic malignancies affecting myeloid, mixed, and lymphoid lineages, and these mutations are associated... 
PATHOGENESIS | NEOPLASMS | DNA HYPERMETHYLATION | GENES | CLASSIFICATION | CLONAL EVOLUTION | CHROMATIN PATTERN | MUTATIONS | HEMATOLOGY | GENOME | BETHESDA PROPOSALS | Promoter Regions, Genetic | DNA, Neoplasm - metabolism | Hematologic Neoplasms - enzymology | Hematologic Neoplasms - pathology | Cell Transformation, Neoplastic - metabolism | DNA (Cytosine-5-)-Methyltransferases | Mice, Knockout | DNA Methylation | Animals | Cell Transformation, Neoplastic - genetics | Hematologic Neoplasms - genetics | Mice | DNA, Neoplasm - genetics | Cell Transformation, Neoplastic - pathology | Hematopoietic Stem Cells - enzymology | Index Medicus | Abridged Index Medicus | Hematopoiesis and Stem Cells
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5. Full Text The Histone Demethylase KDM1A Sustains the Oncogenic Potential of MLL-AF9 Leukemia Stem Cells
by Harris, William J and Huang, Xu and Lynch, James T and Spencer, Gary J and Hitchin, James R and Li, Yaoyong and Ciceri, Filippo and Blaser, Julian G and Greystoke, Brigit F and Jordan, Allan M and Miller, Crispin J and Ogilvie, Donald J and Somervaille, Tim C.P
Cancer Cell, ISSN 1535-6108, 04/2012, Volume 21, Issue 4, pp. 473 - 487
Using a mouse model of human MLL-AF9 leukemia, we identified the lysine-specific demethylase KDM1A (LSD1 or AOF2) as an essential regulator of leukemia stem... 
MAINTENANCE | DEVELOPMENTAL REGULATORS | CHROMATIN | ONCOLOGY | LSD1 | TRANSCRIPTION | COMPLEXES | EMBRYONIC STEM | ACUTE MYELOID-LEUKEMIA | GENE ACTIVATION | MIXED-LINEAGE LEUKEMIA | CELL BIOLOGY | Oxidoreductases, N-Demethylating - genetics | Leukemia - pathology | Epigenesis, Genetic | Humans | Leukemia - enzymology | Gene Expression Regulation, Neoplastic | Histone Demethylases - physiology | Apoptosis - genetics | Oxidoreductases, N-Demethylating - physiology | Histone Demethylases - genetics | Gene Knockdown Techniques | Cell Differentiation - genetics | Animals | Myeloid-Lymphoid Leukemia Protein - genetics | Oncogene Proteins, Fusion - genetics | Neoplastic Stem Cells - pathology | Mice | Neoplastic Stem Cells - enzymology | Leukemia - genetics | Care and treatment | Leukemia | Analysis | Oncology, Experimental | Stem cells | Research | Hematopoietic stem cells | Cancer | Index Medicus
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6. Full Text Expression of angiotensin-converting enzyme (CD143) identifies and regulates primitive hemangioblasts derived from human pluripotent stem cells
by Zambidis, Elias T and Park, Tea Soon and Yu, Wayne and Tam, Ada and Levine, Michal and Yuan, Xuan and Pryzhkova, Marina and Péault, Bruno
Blood, ISSN 0006-4971, 11/2008, Volume 112, Issue 9, pp. 3601 - 3614
We report that angiotensin-converting enzyme ( ACE), a critical physiologic regulator of blood pressure, angiogenesis, and inflammation, is a novel marker for... 
DEFINITIVE HEMATOPOIESIS | II TYPE-1 RECEPTOR | YOLK-SAC | DIFFERENTIATION CULTURES | ENDOTHELIAL-CELLS | HUMAN EMBRYO | STROMAL CELLS | HEMATOLOGY | COMMON PRECURSOR | COLONY-FORMING CELLS | HEMATOPOIETIC STEM | Embryonic Stem Cells - cytology | Humans | Thrombopoietin - administration & dosage | Yolk Sac - cytology | Yolk Sac - enzymology | Hematopoiesis - drug effects | Hematopoietic Stem Cells - immunology | Renin-Angiotensin System | Peptidyl-Dipeptidase A - metabolism | Colony-Forming Units Assay | Embryonic Stem Cells - immunology | Yolk Sac - immunology | Biomarkers - metabolism | Growth Substances - administration & dosage | Cell Line | Pluripotent Stem Cells - cytology | Pluripotent Stem Cells - immunology | Embryonic Stem Cells - enzymology | Pluripotent Stem Cells - enzymology | Drug Synergism | Endothelial Cells - immunology | Cell Differentiation - drug effects | Endothelial Cells - cytology | Hematopoietic Stem Cells - cytology | Endothelial Cells - enzymology | Hematopoietic Stem Cells - enzymology | Index Medicus | Abridged Index Medicus | Hematopoiesis and Stem Cells
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7. Full Text Genome-wide Regulation of 5hmC, 5mC, and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells
by Xu, Guoliang and Xu, Yufei and Wu, Feizhen and Tan, Li and Kong, Lingchun and Xiong, Lijun and Deng, Jie and Barbera, Andrew J and Zheng, Lijuan and Zhang, Kun and Zhang, Haikuo and Huang, Stephen and Min, Jinrong and Nicholson, Thomas and Chen, Taiping and Shi, Yang and Shi, Yujiang Geno
Molecular Cell, ISSN 1097-2765, 2011, Volume 42, Issue 4, pp. 451 - 464
DNA methylation at the 5 position of cytosine (5mC) in the mammalian genome is a key epigenetic event critical for various cellular processes. The ten-eleven... 
DNA METHYLATION | 5-METHYLCYTOSINE | RNA-SEQ | QUANTIFICATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | SELF-RENEWAL | 5-HYDROXYMETHYLCYTOSINE | DIFFERENTIATION | SPECIFICATION | BINDING | CELL BIOLOGY | Protein Structure, Tertiary | Proto-Oncogene Proteins - metabolism | Cytosine - analogs & derivatives | Genome-Wide Association Study | DNA (Cytosine-5-)-Methyltransferase 1 | Embryonic Stem Cells - enzymology | Mixed Function Oxygenases - metabolism | DNA (Cytosine-5-)-Methyltransferases - antagonists & inhibitors | DNA-Binding Proteins - metabolism | Animals | 5-Methylcytosine - metabolism | Cytosine - metabolism | Gene Expression Regulation, Developmental | Protein Binding | Mice | Animal genetics | Hypertension | Medical colleges | Transferases | Genes | Genomics | Genomes | Embryonic stem cells | Gene expression | Pyrimidines | DNA | Diabetes | Methylation | Index Medicus | Translocation | Hydroxylase | Embryo cells | Data processing | epigenetics | Antagonism | Embryogenesis | Stem cells | DNA methylation | DNA methyltransferase | Cytosine | Differentiation | Gene mapping | CpG islands
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8. Full Text Increased proteasome activity in human embryonic stem cells is regulated by PSMD11
by Vilchez, David and Boyer, Leah and Morantte, Ianessa and Lutz, Margaret and Merkwirth, Carsten and Joyce, Derek and Spencer, Brian and Page, Lesley and Masliah, Eliezer and Travis Berggren, W and Gage, Fred H and Dillin, Andrew
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7415, pp. 304 - 308
Embryonic stem cells can replicate continuously in the absence of senescence and, therefore, are immortal in culture(1,2). Although genome stability is... 
CORE | MUTANT | PROTEIN-KINASE-B | RPN6P | MULTIDISCIPLINARY SCIENCES | 26S PROTEASOMES | DIFFERENTIATION | SACCHAROMYCES-CEREVISIAE | LINES | PROTEOSTASIS | SUBUNIT | Cell Line | Embryonic Stem Cells - metabolism | Up-Regulation | Pluripotent Stem Cells - cytology | Humans | Embryonic Stem Cells - enzymology | Protein Subunits - metabolism | Pluripotent Stem Cells - metabolism | Transcription Factors - metabolism | Embryonic Stem Cells - drug effects | HEK293 Cells | Cell Differentiation | Proteasome Endopeptidase Complex - metabolism | Proteasome Inhibitors | Physiological aspects | Research | Embryonic stem cells | Properties | Ubiquitin-proteasome system | Proteins | Gene expression | Stem cells | Index Medicus
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9. Full Text Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
by Gomez-Lopez, Sandra and Kemler, Rolf and Kalkan, Tüzer and Eckardt, Dominik and Cook, Andrew and Wray, Jason and Smith, Austin
Nature Cell Biology, ISSN 1465-7392, 07/2011, Volume 13, Issue 7, pp. 838 - 845
Self-renewal of rodent embryonic stem cells is enhanced by partial inhibition of glycogen synthase kinase-3 (Gsk3; refs , ). This effect has variously been... 
ACTIVATION | GROUND-STATE | GENE | TRANSCRIPTION | SELF-RENEWAL | AXIS FORMATION | BETA-CATENIN | WNT | EXPRESSION | REQUIREMENT | CELL BIOLOGY | Cell Line | Basic Helix-Loop-Helix Transcription Factors - genetics | Glycogen Synthase Kinase 3 - antagonists & inhibitors | Gene Expression Regulation, Developmental - drug effects | Embryonic Stem Cells - enzymology | Glycogen Synthase Kinase 3 beta | Pluripotent Stem Cells - enzymology | Gene Regulatory Networks - drug effects | Glycogen Synthase Kinase 3 - metabolism | Recombinant Fusion Proteins - metabolism | beta Catenin - metabolism | beta Catenin - genetics | Dose-Response Relationship, Drug | Animals | Transfection | Basic Helix-Loop-Helix Transcription Factors - metabolism | Embryonic Stem Cells - drug effects | Glycogen Synthase Kinase 3 - genetics | RNA Interference | Cell Differentiation - drug effects | Pluripotent Stem Cells - drug effects | Cell Proliferation - drug effects | Mice | Protein Kinase Inhibitors - pharmacology | Physiological aspects | Cellular signal transduction | Research | Embryonic stem cells | Wnt proteins | Phosphotransferases | Index Medicus
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10. Full Text Novel histone demethylase LSD1 inhibitors selectively target cancer cells with pluripotent stem cell properties
by Wang, Jing and Lu, Fei and Ren, Qi and Sun, Hong and Xu, Zhengshuang and Lan, Rongfeng and Liu, Yuqing and Ward, David and Quan, Junmin and Ye, Tao and Zhang, Hui
Cancer Research, ISSN 0008-5472, 12/2011, Volume 71, Issue 23, pp. 7238 - 7249
Histone modification determines epigenetic patterns of gene expression with methylation of histone H3 at lysine 4 (H3K4) often associated with active... 
OCT4 | ONCOLOGY | STRUCTURAL BASIS | MARKER | ROLES | NEOPLASIA | H3K4 METHYLATION | CHEMISTRY | INDUCTION | INACTIVATOR | Neoplasms - metabolism | Embryonic Stem Cells - metabolism | NIH 3T3 Cells | Histone Demethylases - antagonists & inhibitors | Histone Demethylases - biosynthesis | Humans | Octamer Transcription Factor-3 - biosynthesis | Histone Demethylases - genetics | Octamer Transcription Factor-3 - genetics | Pluripotent Stem Cells - pathology | Epigenomics - methods | RNA Interference | SOXB1 Transcription Factors - genetics | Sensitivity and Specificity | HEK293 Cells | Antineoplastic Agents - pharmacology | Neoplasms - enzymology | Embryonic Stem Cells - enzymology | Pluripotent Stem Cells - enzymology | SOXB1 Transcription Factors - biosynthesis | Neoplasms - drug therapy | Pluripotent Stem Cells - metabolism | Animals | Methylation - drug effects | Pluripotent Stem Cells - drug effects | Cell Line, Tumor | Cell Proliferation - drug effects | Mice | HeLa Cells | Histones - metabolism | Neoplasms - pathology | Index Medicus | Histone H3 Methylation at K4 (H3K4) | Cancer Stem Cell | Pluripotent Cancer Cell | KDM1 | LSD1 | Histone Demethylase
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11. Full Text Reprogramming towards pluripotency requires AID-dependent DNA demethylation
by Blau, Helen M and Brady, Jennifer J and Bhutani, Nidhi and Corbel, Stéphane Y and Damian, Mara and Sacco, Alessandra
Nature, ISSN 0028-0836, 02/2010, Volume 463, Issue 7284, pp. 1042 - 1047
Reprogramming of somatic cell nuclei to yield induced pluripotent stem (iPS) cells makes possible derivation of patient-specific stem cells for regenerative... 
GLYCOSYLASE | DEFINED FACTORS | ACTIVATION | TRANSIENT HETEROKARYONS | MULTIDISCIPLINARY SCIENCES | EMBRYONIC STEM-CELLS | GENE-EXPRESSION | CLASS-SWITCH RECOMBINATION | DIFFERENTIATION | HUMAN SOMATIC-CELLS | FIBROBLASTS | Embryonic Stem Cells - metabolism | Embryonic Stem Cells - cytology | Humans | Lung - cytology | Promoter Regions, Genetic - genetics | Gene Knockdown Techniques | Octamer Transcription Factor-3 - genetics | Cell Fusion | DNA Methylation | Chromatin Immunoprecipitation | Time Factors | Cell Division | Induced Pluripotent Stem Cells - cytology | Cellular Reprogramming - genetics | Fibroblasts - metabolism | Induced Pluripotent Stem Cells - metabolism | Cell Line | Induced Pluripotent Stem Cells - enzymology | Nanog Homeobox Protein | Cytidine Deaminase - genetics | Cells, Cultured | Gene Expression Regulation | DNA Replication | DNA - metabolism | Homeodomain Proteins - genetics | DNA - genetics | DNA - chemistry | Animals | Models, Biological | Cytidine Deaminase - metabolism | Cytidine Deaminase - deficiency | Lung - embryology | Fibroblasts - cytology | Mice | Cellular Reprogramming - physiology | Physiological aspects | Genetic aspects | Research | Regeneration (Biology) | Embryonic stem cells | Methylation | Gene expression | Studies | Cell division | Labeling | Research & development--R&D | Efficiency | Index Medicus
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