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Nature Chemical Biology, ISSN 1552-4450, 11/2015, Volume 11, Issue 11, pp. 840 - 846
Journal Article
Nature, ISSN 0028-0836, 02/2012, Volume 482, Issue 7386, pp. 501 - 506
Ribosome-driven protein biosynthesis is comprised of four phases: initiation, elongation, termination and recycling. In bacteria, ribosome recycling requires... 
THERMOCOCCUS-KODAKARAENSIS | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | NO-GO DECAY | X-RAY-STRUCTURE | FREE PROTEIN-SYNTHESIS | ELECTRON-MICROSCOPY | MESSENGER-RNA DECAY | TRANSLATION TERMINATION | ATP-BINDING | 80S RIBOSOME | Endoribonucleases - chemistry | Pyrococcus furiosus - chemistry | Pyrococcus furiosus - metabolism | Ribosomes - metabolism | Iron-Sulfur Proteins - chemistry | Cell Cycle Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | ATP-Binding Cassette Transporters - chemistry | ATP-Binding Cassette Transporters - metabolism | Protein Stability | Protein Structure, Tertiary | Movement | Endoribonucleases - metabolism | Cell Cycle Proteins - metabolism | Ribosomes - chemistry | Models, Molecular | Nuclear Proteins - metabolism | Nuclear Proteins - chemistry | Peptide Termination Factors - metabolism | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | Multiprotein Complexes - chemistry | Ribosomes - ultrastructure | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Iron-Sulfur Proteins - metabolism | Peptide Termination Factors - chemistry | Evolution, Molecular | Saccharomyces cerevisiae Proteins - chemistry | Eukaryotes | Ribosomes | Physiological aspects | Protein biosynthesis | Research | Structure | Archaeabacteria | Proteins | Ribonucleic acid--RNA | Transfer RNA
Journal Article
RNA, ISSN 1355-8382, 05/2017, Volume 23, Issue 5, pp. 655 - 672
Journal Article
Molecular Cell, ISSN 1097-2765, 05/2012, Volume 46, Issue 4, pp. 518 - 529
Translation arrest leads to an endonucleolytic cleavage of mRNA that is termed no-go decay (NGD). It has been reported that the Dom34:Hbs1 complex stimulates... 
YEAST | DEPENDENT TRANSLATION ARREST | TERMINATION CODON | LACKING | BIOCHEMISTRY & MOLECULAR BIOLOGY | NO-GO DECAY | EXOSOME | SURVEILLANCE | DEGRADATION | CONTROL PATHWAYS | POLY(A) TAIL | CELL BIOLOGY | Adaptor Proteins, Signal Transducing - chemistry | Endoribonucleases - chemistry | Endoribonucleases - genetics | Peptide Elongation Factors - metabolism | Peptide Chain Elongation, Translational | Saccharomyces cerevisiae - genetics | Ribosomes - metabolism | Multiprotein Complexes - genetics | RNA, Messenger - metabolism | GTP-Binding Proteins - genetics | Cell Cycle Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | Base Sequence | Cell Cycle Proteins - genetics | HSP70 Heat-Shock Proteins - chemistry | Protein Interaction Domains and Motifs | RNA, Fungal - genetics | Peptide Elongation Factors - genetics | Endoribonucleases - metabolism | GTP-Binding Proteins - chemistry | RNA, Messenger - genetics | Cell Cycle Proteins - metabolism | HSP70 Heat-Shock Proteins - genetics | Saccharomyces cerevisiae Proteins - genetics | RNA Stability | HSP70 Heat-Shock Proteins - metabolism | RNA, Fungal - metabolism | Nonsense Mediated mRNA Decay | Multiprotein Complexes - chemistry | Peptide Elongation Factors - chemistry | Adaptor Proteins, Signal Transducing - genetics | Saccharomyces cerevisiae Proteins - metabolism | Adaptor Proteins, Signal Transducing - metabolism | GTP-Binding Proteins - metabolism | Saccharomyces cerevisiae Proteins - chemistry | RNA | Genetic translation | Messenger RNA
Journal Article
Journal of Biological Chemistry, ISSN 0021-9258, 2018, Volume 293, Issue 31, pp. 12054 - 12067
Nidovirus endoribonucleases (NendoUs) include nonstructural protein 15 (nsp15) from coronaviruses and nsp11 from arteriviruses, both of which have been... 
PROTEIN | protein evolution | MOUSE HEPATITIS-VIRUS | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | protein purification | viral protein | evolution | REPLICATIVE ENDORIBONUCLEASE | INDUCTION | DISCOVERY | MURINE | endoribonuclease | XENDOU | oligomerization | PDCoV nsp15 | nidovirus | CORONAVIRUS ENDORIBONUCLEASE | Endoribonucleases - chemistry | Coronavirus - classification | Endoribonucleases - genetics | Virus Replication - genetics | Protein Multimerization | Nidovirales - genetics | Crystallography, X-Ray | SARS Virus - metabolism | Protein Subunits - metabolism | SARS Virus - classification | Nidovirales - chemistry | Viral Nonstructural Proteins - chemistry | SARS Virus - genetics | Coronavirus - metabolism | Arterivirus - metabolism | Cloning, Molecular | Escherichia coli - metabolism | Arterivirus - chemistry | Protein Interaction Domains and Motifs | Arterivirus - classification | Binding Sites | Protein Subunits - genetics | Recombinant Proteins - metabolism | Amino Acid Sequence | Protein Conformation, alpha-Helical | Gene Expression | Endoribonucleases - metabolism | Genetic Vectors - chemistry | Genetic Vectors - metabolism | Models, Molecular | Recombinant Proteins - chemistry | Viral Nonstructural Proteins - genetics | Recombinant Proteins - genetics | SARS Virus - chemistry | Arterivirus - genetics | Sequence Homology, Amino Acid | Nidovirales - classification | Sequence Alignment | Coronavirus - chemistry | Protein Conformation, beta-Strand | Escherichia coli - genetics | Coronavirus - genetics | Protein Binding | Viral Nonstructural Proteins - metabolism | Nidovirales - metabolism | Protein Subunits - chemistry | Evolution, Molecular | Microbiology
Journal Article
Nature Structural & Molecular Biology, ISSN 1545-9993, 06/2011, Volume 18, Issue 6, pp. 715 - 720
No-go decay (NGD) is a mRNA quality-control mechanism in eukaryotic cells that leads to degradation of mRNAs stalled during translational elongation. The key... 
EF-TU | CRYSTAL-STRUCTURE | EUKARYOTIC RIBOSOME | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | ELECTRON-MICROSCOPY | CRYO-EM | STOP CODON RECOGNITION | RELEASE FACTOR ERF3 | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | TERMINATION FACTOR ERF1 | BIOPHYSICS | Endoribonucleases - chemistry | Peptide Elongation Factors - metabolism | Cell Cycle Proteins - ultrastructure | Ribosomes - metabolism | RNA, Messenger - metabolism | Cell Cycle Proteins - chemistry | Saccharomyces cerevisiae - metabolism | HSP70 Heat-Shock Proteins - chemistry | Saccharomyces cerevisiae Proteins - ultrastructure | Endoribonucleases - ultrastructure | Endoribonucleases - metabolism | GTP-Binding Proteins - chemistry | HSP70 Heat-Shock Proteins - ultrastructure | Cell Cycle Proteins - metabolism | Ribosomes - chemistry | Models, Molecular | GTP-Binding Proteins - ultrastructure | RNA Stability | HSP70 Heat-Shock Proteins - metabolism | Cryoelectron Microscopy | Peptide Elongation Factors - chemistry | Ribosomes - ultrastructure | Peptide Elongation Factors - ultrastructure | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | RNA, Messenger - chemistry | GTP-Binding Proteins - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Peptides | Cellular biology | Ribonucleic acid--RNA | Molecular biology | Crystal structure
Journal Article
Molecular Cell, ISSN 1097-2765, 01/2017, Volume 65, Issue 1, pp. 39 - 51
Understanding RNA processing and turnover requires knowledge of cleavages by major endoribonucleases within a living cell. We have employed TIER-seq... 
Hfq | non-coding RNA | sRNA maturation | 3′ UTR | uridine ruler | TIER-seq | RNA degradome | ArcZ | RNase E | RprA | TARGET MESSENGER-RNA | REGULATORY SMALL RNAS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | STRESS-RESPONSE | GENE-EXPRESSION | RIBONUCLEASE-E | GLOBAL ANALYSIS | RIBOSOMAL-RNA | ENDONUCLEOLYTIC CLEAVAGE | DNA MICROARRAYS | CELL BIOLOGY | RNA Precursors - chemistry | Endoribonucleases - chemistry | Endoribonucleases - genetics | Bacterial Proteins - chemistry | Transcriptome | Databases, Genetic | Salmonella enterica - genetics | Structure-Activity Relationship | RNA, Messenger - metabolism | Host Factor 1 Protein - metabolism | RNA, Small Untranslated - chemistry | Salmonella enterica - enzymology | RNA, Bacterial - genetics | RNA, Small Untranslated - genetics | RNA Precursors - metabolism | Catalysis | 3' Untranslated Regions | Nucleic Acid Conformation | Host Factor 1 Protein - genetics | RNA, Bacterial - metabolism | RNA, Small Untranslated - metabolism | Endoribonucleases - metabolism | RNA, Messenger - genetics | Bacterial Proteins - genetics | Computational Biology | RNA Precursors - genetics | Molecular Dynamics Simulation | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | RNA, Messenger - chemistry | Uridine - metabolism | Gene Expression Regulation, Bacterial | Nucleases | Messenger RNA | Nucleotides | Ribonuclease | Research institutes
Journal Article
RNA, ISSN 1355-8382, 07/2013, Volume 19, Issue 7, pp. 1003 - 1014
Affinity purification of RNA using the ARiBo tag technology currently provides an ideal approach to quickly prepare RNA with 3' homogeneity. Here, we explored... 
T7 RNA polymerase | CRISPR tag | 5′ heterogeneity | ARiBo tag | Cse3 endoribonuclease | Affinity purification of RNA | CRYSTALLIZATION | BACTERIA | IN-VITRO TRANSCRIPTS | RECOGNITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | 5 ' heterogeneity | POLYMERASE | CLEAVAGE | RIBOZYME | ARCHAEA | affinity purification of RNA | DNA | PROMOTER | RNA, Spliced Leader - isolation & purification | RNA, Spliced Leader - genetics | Thermus thermophilus - genetics | RNA, Viral - genetics | Cloning, Molecular | Plasmids - genetics | Neurospora - genetics | Transcription, Genetic | DNA-Directed RNA Polymerases - chemistry | RNA, Fungal - genetics | RNA, Fungal - isolation & purification | Nucleic Acid Conformation | RNA, Catalytic - chemistry | RNA, Viral - isolation & purification | Bacteriophage T7 - chemistry | Chromatography, Affinity - methods | Inverted Repeat Sequences | Neurospora - chemistry | Promoter Regions, Genetic | Thermus thermophilus - chemistry | Bacteriophage T7 - genetics | Affinity Labels - chemistry | Viral Proteins - chemistry | RNA, Fungal - chemistry | Viral Proteins - genetics | RNA Cleavage | DNA-Directed RNA Polymerases - genetics | Recombinant Fusion Proteins - chemistry | RNA Stability | Genetic Heterogeneity | RNA, Viral - chemistry | Plasmids - chemistry | Recombinant Fusion Proteins - genetics | RNA, Spliced Leader - chemistry | RNA, Catalytic - genetics | Method
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 97 - 12
Nuclease and helicase activities play pivotal roles in various aspects of RNA processing and degradation. These two activities are often present in... 
YEAST | COMPLEX | DOMAIN | RECOGNITION | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | SEQUENCE | DEGRADATION | QUATERNARY STRUCTURE | SCATTERING | FEATURES | Endoribonucleases - chemistry | RNA Helicases - metabolism | Endoribonucleases - genetics | Exoribonucleases - genetics | Saccharomyces cerevisiae - genetics | Exoribonucleases - chemistry | Multienzyme Complexes - metabolism | Crystallography, X-Ray | Mitochondrial Proteins - genetics | RNA Helicases - chemistry | RNA - genetics | Saccharomyces cerevisiae - metabolism | Mitochondrial Proteins - metabolism | Base Sequence | RNA Helicases - genetics | DEAD-box RNA Helicases - metabolism | Nucleic Acid Conformation | DEAD-box RNA Helicases - chemistry | RNA - metabolism | Amino Acid Sequence | Polyribonucleotide Nucleotidyltransferase - metabolism | Endoribonucleases - metabolism | Polyribonucleotide Nucleotidyltransferase - genetics | Multienzyme Complexes - genetics | Saccharomyces cerevisiae Proteins - genetics | RNA - chemistry | Candida glabrata - metabolism | Multienzyme Complexes - chemistry | Sequence Homology, Amino Acid | DEAD-box RNA Helicases - genetics | RNA, Mitochondrial | Mitochondrial Proteins - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Saccharomyces cerevisiae - enzymology | Protein Conformation | Candida glabrata - genetics | Candida glabrata - enzymology | Exoribonucleases - metabolism | Polyribonucleotide Nucleotidyltransferase - chemistry | Saccharomyces cerevisiae Proteins - chemistry | Biodegradation | Yeast | Nucleic acids | Gene expression | Metabolism | Ribonucleic acid--RNA | DNA helicase | Mitochondria | Enzymatic activity | Nuclease | RNA processing | Crystal structure | Structural analysis
Journal Article
Journal Article