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by Djebali, Sarah and Davis, Carrie A and Merkel, Angelika and Dobin, Alex and Lassmann, Timo and Mortazavi, Ali and Tanzer, Andrea and Lagarde, Julien and Lin, Wei and Schlesinger, Felix and Xue, Chenghai and Marinov, Georgi K and Khatun, Jainab and Williams, Brian A and Zaleski, Chris and Rozowsky, Joel and Röder, Maik and Kokocinski, Felix and Abdelhamid, Rehab F and Alioto, Tyler and Antoshechkin, Igor and Baer, Michael T and Bar, Nadav S and Batut, Philippe and Bell, Kimberly and Bell, Ian and Chakrabortty, Sudipto and Chen, Xian and Chrast, Jacqueline and Curado, Joao and Derrien, Thomas and Drenkow, Jorg and Dumais, Erica and Dumais, Jacqueline and Duttagupta, Radha and Falconnet, Emilie and Fastuca, Meagan and Fejes-Toth, Kata and Ferreira, Pedro and Foissac, Sylvain and Fullwood, Melissa J and Gao, Hui and Gonzalez, David and Gordon, Assaf and Gunawardena, Harsha and Howald, Cedric and Jha, Sonali and Johnson, Rory and Kapranov, Philipp and King, Brandon and Kingswood, Colin and Luo, Oscar J and Park, Eddie and Persaud, Kimberly and Preall, Jonathan B and Ribeca, Paolo and Risk, Brian and Robyr, Daniel and Sammeth, Michael and Schaffer, Lorian and See, Lei-Hoon and Shahab, Atif and Skancke, Jorgen and Suzuki, Ana Maria and Takahashi, Hazuki and Tilgner, Hagen and Trout, Diane and Walters, Nathalie and Wang, Huaien and Wrobel, John and Yu, Yanbao and Ruan, Xiaoan and Hayashizaki, Yoshihide and Harrow, Jennifer and Gerstein, Mark and Hubbard, Tim and Reymond, Alexandre and Antonarakis, Stylianos E and Hannon, Gregory and Giddings, Morgan C and Ruan, Yijun and Wold, Barbara and Carninci, Piero and Guig, Roderic and Gingeras, Thomas R
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 101 - 108
Journal Article
by Dunham, Ian and Kundaje, Anshul and Aldred, Shelley F and Collins, Patrick J and Davis, Carrie A and Doyle, Francis and Epstein, Charles B and Frietze, Seth and Harrow, Jennifer and Kaul, Rajinder and Khatun, Jainab and Lajoie, Bryan R and Landt, Stephen G and Lee, Bum-Kyu and Pauli, Florencia and Rosenbloom, Kate R and Sabo, Peter and Safi, Alexias and Sanyal, Amartya and Shoresh, Noam and Simon, Jeremy M and Song, Lingyun and Trinklein, Nathan D and Altshuler, Robert C and Birney, Ewan and Brown, James B and Cheng, Chao and Djebali, Sarah and Dong, Xianjun and Ernst, Jason and Furey, Terrence S and Gerstein, Mark and Giardine, Belinda and Greven, Melissa and Hardison, Ross C and Harris, Robert S and Herrero, Javier and Hoffman, Michael M and Iyer, Sowmya and Kellis, Manolis and Kheradpour, Pouya and Lassmann, Timo and Li, Qunhua and Lin, Xinying and Marinov, Georgi K and Merkel, Angelika and Mortazavi, Ali and Parker, Stephen C. J and Reddy, Timothy E and Rozowsky, Joel and Schlesinger, Felix and Thurman, Robert E and Wang, Jie and Ward, Lucas D and Whitfield, Troy W and Wilder, Steven P and Wu, Weisheng and Xi, Hualin S and Yip, Kevin Y and Zhuang, Jiali and Bernstein, Bradley E and Green, Eric D and Gunter, Chris and Snyder, Michael and Pazin, Michael J and Lowdon, Rebecca F and Dillon, Laura A. L and Adams, Leslie B and Kelly, Caroline J and Zhang, Julia and Wexler, Judith R and Good, Peter J and Feingold, Elise A and Crawford, Gregory E and Dekker, Job and Elnitski, Laura and Farnham, Peggy J and Giddings, Morgan C and Gingeras, Thomas R and Guigó, Roderic and Hubbard, Timothy J and Kent, W. James and Lieb, Jason D and Margulies, Elliott H and Myers, Richard M and Stamatoyannopoulos, John A and Tenenbaum, Scott A and Weng, Zhiping and White, Kevin P and Wold, Barbara and Yu, Yanbao and Wrobel, John and Risk, Brian A and Gunawardena, Harsha P and Kuiper, Heather C and Maier, Christopher W and Xie, Ling and Chen, Xian and Mikkelsen, Tarjei S and Gillespie, Shawn and ... and ENCODE Project Consortium and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 57 - 74
The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA... 
TRANSCRIPTION FACTOR-BINDING | CHROMATIN | MAPS | DETERMINANTS | HUMAN-CELLS | MULTIDISCIPLINARY SCIENCES | IN-VIVO | REGIONS | MOUSE | WIDE | CHROMOSOME CONFORMATION CAPTURE | Chromatin | Exons | Genomics | Genes | Humans | Regulatory Sequences, Nucleic Acid | Neoplasms | Encyclopedias as Topic | Proteins | Genetic Variation | Deoxyribonuclease I | Chromatin Immunoprecipitation | DNA methylation | Histones | Genetics | Transcription, Genetic | Chromosomes, Human | Binding Sites | Deoxyribonucleic acid--DNA | DNA-Binding Proteins | Promoter Regions, Genetic | Genetic Predisposition to Disease | Genome-Wide Association Study | Molecular Sequence Annotation | Mammals | Studies | DNA Footprinting | Animals | Sequence Analysis, RNA | DNA | Alleles | Polymorphism, Single Nucleotide | Transcription Factors | Genome, Human | Transcription factors | Transcription | Gene regulation | Data processing | Genomes | Regulatory sequences | Statistics | Mammals - genetics | Chromatin - metabolism | Histones - chemistry | Promoter Regions, Genetic - genetics | DNA-Binding Proteins - metabolism | Neoplasms - genetics | Genetic Predisposition to Disease - genetics | Chromosomes, Human - genetics | Exons - genetics | DNA Methylation - genetics | Binding Sites - genetics | Chromosomes, Human - metabolism | Genome, Human - genetics | Regulatory Sequences, Nucleic Acid - genetics | DNA - genetics | Proteins - genetics | Transcription Factors - metabolism | Deoxyribonuclease I - metabolism | Polymorphism, Single Nucleotide - genetics | Genetic Variation - genetics | Histones - metabolism | Transcription, Genetic - genetics | Chromatin - genetics | Genetic research | Genetic transcription | Research | Human genome | Index Medicus | Life Sciences
Journal Article
Nature, ISSN 0028-0836, 03/2011, Volume 471, Issue 7339, pp. 467 - 472
Multiple myeloma is an incurable malignancy of plasma cells, and its pathogenesis is poorly understood. Here we report the massively parallel sequencing of 38... 
PATHOGENESIS | B-CELL LYMPHOMA | BLIMP-1 | GENE | MULTIDISCIPLINARY SCIENCES | STRESS-RESPONSE | EXOSOME | CLASSIFICATION | DIFFERENTIATION | HUMAN CANCER | SOMATIC MUTATIONS | Blood coagulation | Translation | Multiple myeloma | Clinical trials | Data processing | Genomes | Malignancy | Signal transduction | NF- Kappa B protein | Histones | DNA methylation | Plasma cells | Mutation | Methylation | Cancer | Protein Biosynthesis | Pathogenesis | Exons | Genomics | Humans | Open Reading Frames | Homeostasis | Molecular Sequence Data | Kinases | DIS3 protein, human | Proteins | NF-kappa B | DNA Mutational Analysis | Blood Coagulation | Genetics | Transcription, Genetic | Proto-Oncogene Proteins B-raf | Oncogenes | Multiple Myeloma | Amino Acid Sequence | RNA Processing, Post-Transcriptional | Signal Transduction | homeobox protein HOXA9 | Models, Molecular | Ribonucleases | BRAF protein, human | Homeodomain Proteins | DNA Repair | CpG Islands | Protein Conformation | Exosome Multienzyme Ribonuclease Complex | Genome, Human | Mass spectrometry | Ribonucleases - genetics | Ribonucleases - chemistry | NF-kappa B - metabolism | DNA Repair - genetics | Multiple Myeloma - drug therapy | Protein Biosynthesis - genetics | Multiple Myeloma - enzymology | Proto-Oncogene Proteins B-raf - metabolism | Oncogenes - genetics | Exons - genetics | Signal Transduction - genetics | Multiple Myeloma - metabolism | Mutation - genetics | Open Reading Frames - genetics | Genome, Human - genetics | Homeodomain Proteins - genetics | Proto-Oncogene Proteins B-raf - antagonists & inhibitors | RNA Processing, Post-Transcriptional - genetics | Proto-Oncogene Proteins B-raf - genetics | CpG Islands - genetics | Blood Coagulation - genetics | Histones - metabolism | Transcription, Genetic - genetics | Homeostasis - genetics | Multiple Myeloma - genetics | Usage | Development and progression | Genetic aspects | Research | Nucleotide sequencing | Methods | Index Medicus
Journal Article
Nature, ISSN 0028-0836, 05/2012, Volume 484, Issue 7397, pp. 246 - 250
It is well established that autism spectrum disorders (ASD) have a strong genetic component; however, for at least 70% of cases, the underlying genetic cause... 
NIMH | INTEGRATION | CHD8 | MULTIDISCIPLINARY SCIENCES | GENES | CNVS | SPECTRUM DISORDERS | GENOME-WIDE ASSOCIATION | COPY-NUMBER VARIATION | STRATEGIES | REGION | Exons | Genes | Humans | GPI-Linked Proteins | Parents | Protein Interaction Maps | Exome | Laminin | Stochastic Processes | NR2B NMDA receptor | Genetics | DNA-Binding Proteins | Siblings | Genetic Predisposition to Disease | Reproducibility of Results | Signal Transduction | beta Catenin | Autistic Disorder | Sodium Channels | SCN1A protein, human | Receptors, N-Methyl-D-Aspartate | Nerve Tissue Proteins | Autism | NAV1.1 Voltage-Gated Sodium Channel | Point Mutation | Tumor Suppressor Protein p53 | NTNG1 protein, human | Transcription Factors | Mutation | CHD8 protein, human | LAMC3 protein, human | Autistic Disorder - genetics | Genetic Predisposition to Disease - genetics | Tumor Suppressor Protein p53 - metabolism | Exons - genetics | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Nerve Tissue Proteins - genetics | beta Catenin - metabolism | Netrins | Receptors, N-Methyl-D-Aspartate - genetics | Laminin - genetics | Point Mutation - genetics | Exome - genetics | Protein Interaction Maps - genetics | Sodium Channels - genetics | GPI-Linked Proteins - genetics | Care and treatment | Gene mutations | Genetic variation | Pervasive developmental disorders | Genetic aspects | Research | Health aspects | Risk factors | Index Medicus
Journal Article