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1. Full Text Integrated differential DNA methylation and gene expression of formalin-fixed paraffin-embedded uveal melanoma specimens identifies genes associated with early metastasis and poor prognosis
by Ness, Charlotte and Katta, Kirankumar and Garred, Øystein and Kumar, Theresa and Olstad, Ole Kristoffer and Petrovski, Goran and Moe, Morten C and Noer, Agate
Experimental eye research, 12/2020, pp. 108426 - 108426
Index Medicus
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2. Full Text α‐Synuclein real‐time quaking‐induced conversion in the submandibular glands of Parkinson's disease patients
by Manne, Sireesha and Kondru, Naveen and Jin, Huajun and Anantharam, Vellareddy and Huang, Xuemei and Kanthasamy, Arthi and Kanthasamy, Anumantha G
Movement disorders, ISSN 0885-3185, 02/2020, Volume 35, Issue 2, pp. 268 - 278
formalin‐fixed paraffin‐embedded (FFPE) | real‐time quaking‐induced conversion (RT‐QuIC) | pathological α‐synuclein (paS) | Parkinson's disease (PD) | submandibular gland (SMG) | pathological α-synuclein (paS) | formalin-fixed paraffin-embedded (FFPE) | real-time quaking-induced conversion (RT-QuIC) | Clinical Neurology | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Parkinson's disease | Neurodegenerative diseases | Lewy body disease | Serine | Parkinsons disease | Submandibular gland | Synuclein | Paraffin | Seeding | Formaldehyde | Movement disorders | Lewy bodies | Index Medicus
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3. Full Text Suitability of melanoma FFPE samples for NGS libraries: time and quality thresholds for downstream molecular tests
by Millán-Esteban, David and Reyes-García, Diana and García-Casado, Zaida and Bañuls, José and López-Guerrero, José Antonio and Requena, Celia and Rodríguez-Hernández, Aranzazu and Traves, Víctor and Nagore, Eduardo
BioTechniques, ISSN 0736-6205, 08/2018, Volume 65, Issue 2, pp. 79 - 85
library | FFPE | DIN | melanoma | threshold | NGS | time | quality | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology
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4. Full Text Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10000 proteins
by Wiśniewski, Jacek R and Duś, Kamila and Mann, Matthias
Proteomics. Clinical applications, ISSN 1862-8346, 04/2013, Volume 7, Issue 3-4, pp. 225 - 233
FASP | Colon cancer | Adenoma | FFPE-tissue | Microdissection | Enzymes | Development and progression | Detergents, Synthetic | Peptides | Formaldehyde
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5. Full Text MicroRNA profiling of clear cell renal cell carcinoma by whole‐genome small RNA deep sequencing of paired frozen and formalin‐fixed, paraffin‐embedded tissue specimens
by Weng, Lihong and Wu, Xiwei and Gao, Hanlin and Mu, Bing and Li, Xuejun and Wang, Jin‐Hui and Guo, Chao and Jin, Jennifer M and Chen, Zhuo and Covarrubias, Maricela and Yuan, Yate‐Ching and Weiss, Lawrence M and Wu, Huiqing
The Journal of pathology, ISSN 0022-3417, 09/2010, Volume 222, Issue 1, pp. 41 - 51
renal cell carcinoma | microarray | formalin‐fixed paraffin‐embedded (FFPE) | miRNA | small RNA deep sequencing (smRNA‐seq) | RT–PCR | next‐generation sequencing | Formalin-fixed paraffin-embedded (FFPE) | Next-generation sequencing | Renal cell carcinoma | Small RNA deep sequencing (smRNA-seq) | Microarray | RT - PCR | Pathology | Oncology | Life Sciences & Biomedicine | Science & Technology | Tumors of the urinary system | Kidneys | Investigative techniques, diagnostic techniques (general aspects) | Pathology. Cytology. Biochemistry. Spectrometry. Miscellaneous investigative techniques | Nephrology. Urinary tract diseases | Biological and medical sciences | Medical sciences | Kidney Neoplasms - genetics | Oligonucleotide Array Sequence Analysis - methods | Humans | Gene Expression Regulation, Neoplastic | Carcinoma, Renal Cell - genetics | Gene Expression Profiling - methods | Tissue Fixation - methods | Formaldehyde | Paraffin Embedding | Cryopreservation | Reverse Transcriptase Polymerase Chain Reaction - methods | RNA, Neoplasm - genetics | MicroRNAs - genetics | Cluster Analysis | Index Medicus | Polymerase chain reaction | Clear cells | non-coding RNA | Mortality | biomarkers | Benign
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6. Full Text 3'RNA Sequencing Accurately Classifies Formalin-Fixed Paraffin-Embedded Uterine Leiomyomas
by Mehine, Miika and Khamaiseh, Sara and Ahvenainen, Terhi and Heikkinen, Tuomas and Äyräväinen, Anna and Pakarinen, Päivi and Härkki, Päivi and Pasanen, Annukka and Bützow, Ralf and Vahteristo, Pia
Cancers, ISSN 2072-6694, 12/2020, Volume 12, Issue 12, p. 3839
MED12 | HMGA2 | 3′RNA sequencing | FFPE | QuantSeq | fibroids
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7. Full Text Direct Analysis and MALDI Imaging of Formalin-Fixed, Paraffin-Embedded Tissue Sections
by Lemaire, R and Desmons, A and Tabet, J. C and Day, R and Salzet, M and Fournier, I
Journal of proteome research, ISSN 1535-3893, 04/2007, Volume 6, Issue 4, pp. 1295 - 1305
In situ enzymatic digestion | FFPE | Imaging | MALDI | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Paraffin Embedding | Animals | Formaldehyde - chemistry | Humans | Rats | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Brain Chemistry | Proteins - analysis | Proteomics - methods | Tissue Fixation | Microtomy | Index Medicus
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8. Full Text HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics
by Marchione, Dylan M and Ilieva, Ilyana and Devins, Kyle and Sharpe, Danielle and Pappin, Darryl J and Garcia, Benjamin A and Wilson, John P and Wojcik, John B
Journal of proteome research, ISSN 1535-3893, 02/2020, Volume 19, Issue 2, pp. 973 - 983
clinical proteomics | tissue | S-Trap | immunohistochemistry | FFPE | sample preparation | Index Medicus
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9. Full Text Reduced SMAD2/3 activation independently predicts increased depth of human cutaneous squamous cell carcinoma
by Rose, Aidan M and Spender, Lindsay C and Stephen, Christopher and Mitchell, Alastair and Rickaby, William and Bray, Susan and Evans, Alan T and Dayal, Jasbani and Purdie, Karin J and Harwood, Catherine A and Proby, Charlotte M and Leigh, Irene M and Coates, Philip J and Inman, Gareth J
Oncotarget, ISSN 1949-2553, 2018, Volume 9, Issue 18, pp. 14552 - 14566
TGF-β | Carcinoma | SMAD | FFPE | IHC
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10. Full Text Automated sample preparation with SP3 for low‐input clinical proteomics
by Müller, Torsten and Kalxdorf, Mathias and Longuespée, Rémi and Kazdal, Daniel N and Stenzinger, Albrecht and Krijgsveld, Jeroen
Molecular systems biology, ISSN 1744-4292, 01/2020, Volume 16, Issue 1, pp. e9111 - n/a
clinical proteomics | automation | FFPE | low‐input | SP3 | Index Medicus
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11. Full Text Molecular characterization of Prototheca in 11 symptomatic dogs
by Falcaro, Christian and Furlanello, Tommaso and Binanti, Diana and Fondati, Alessandra and Bonfanti, Ugo and Krockenberger, Mark and Malik, Richard and Danesi, Patrizia
Journal of veterinary diagnostic investigation, ISSN 1040-6387, 1/2021, Volume 33, Issue 1, pp. 156 - 161
cytology | real-time PCR | canine protothecosis | FFPE | 28S rRNA | cytb mtDNA | Index Medicus
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12. Making the most of pathological specimens: Molecular diagnosis in formalin-fixed, paraffin embedded tissue
by Fairley, Jennifer A and Gilmour, Katelyn and Walsh, Kathy
Current drug targets, ISSN 1389-4501, 2012, Volume 13, Issue 12, pp. 1475 - 1487
Molecular diagnostics | FFPE diagnostics | Targeted therapy | Biomarkers | FFPE tissue | Molecular pathology | BRAF | KRAS | Personalised medicine | HER2 | EGFR | Life Sciences & Biomedicine | Pharmacology & Pharmacy | Science & Technology
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13. Full Text Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples
by Xi, Yaguang and Nakajima, Go and Gavin, Elaine and Morris, Chris G and Kudo, Kenji and Hayashi, Kazuhiko and Ju, Jingfang
RNA (Cambridge), ISSN 1355-8382, 10/2007, Volume 13, Issue 10, pp. 1668 - 1674
microRNA | Microarray | Expression | FFPE | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Paraffin Embedding - methods | Animals | Formaldehyde - metabolism | MicroRNAs - analysis | Humans | Tissue Fixation - methods | Frozen Sections - methods | Index Medicus | microarray | expression
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14. Full Text Novel prognostic protein markers of resectable pancreatic cancer identified by coupled shotgun and targeted proteomics using formalin‐fixed paraffin‐embedded tissues
by Takadate, Tatsuyuki and Onogawa, Tohru and Fukuda, Tetsuya and Motoi, Fuyuhiko and Suzuki, Takashi and Fujii, Kiyonaga and Kihara, Makoto and Mikami, Sayaka and Bando, Yasuhiko and Maeda, Shimpei and Ishida, Kazuyuki and Minowa, Takashi and Hanagata, Nobutaka and Ohtsuka, Hideo and Katayose, Yu and Egawa, Shinichi and Nishimura, Toshihide and Unno, Michiaki
International journal of cancer, ISSN 0020-7136, 03/2013, Volume 132, Issue 6, pp. 1368 - 1382
liquid chromatography‐tandem mass spectrometry (LC‐MS/MS) | laser microdissection (LMD) | pancreatic cancer | scheduled selected reaction monitoring (sSRM) | formalin‐fixed paraffin‐embedded (FFPE) | formalin-fixed paraffin-embedded (FFPE) | liquid chromatography-tandem mass spectrometry (LC-MS/MS) | Life Sciences & Biomedicine | Oncology | Science & Technology | Gastroenterology. Liver. Pancreas. Abdomen | Biological and medical sciences | Medical sciences | Liver. Biliary tract. Portal circulation. Exocrine pancreas | Tumors | Immunohistochemistry | Pancreatic Neoplasms - chemistry | Prognosis | Biomarkers, Tumor - analysis | Humans | Middle Aged | Male | Formaldehyde | Carcinoma, Pancreatic Ductal - chemistry | Paraffin Embedding | Tandem Mass Spectrometry | Chromatography, Liquid | Carcinoma, Pancreatic Ductal - mortality | Female | Neoplasm Proteins - analysis | Aged | Pancreatic Neoplasms - mortality | Proteomics - methods | Proteins | Medical colleges | Pancreatic cancer | Proteomics | Liquid chromatography | Shotguns | Health aspects | Mass spectrometry | Biomarkers | Index Medicus
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