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Nucleic acids research, ISSN 0305-1048, 2015, Volume 43, Issue 1, pp. W306 - W313
Protein aggregation underlies an increasing number of disorders and constitutes a major bottleneck in the development of therapeutic proteins. Our present... 
PROPENSITIES | SEQUENCE-BASED PREDICTION | FLUCTUATIONS | BIOCHEMISTRY & MOLECULAR BIOLOGY | FLEXIBILITY | REGIONS | FORCE-FIELD | MECHANISMS | ALZHEIMERS | SOLUBILITY | Algorithms | Protein Aggregates - genetics | Protein Conformation | Protein Subunits - chemistry | Software | Internet | Mutation | Molecular Dynamics Simulation | Protein Folding | Web Server issue
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2016, Volume 44, Issue 1, pp. W430 - W435
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2017, Volume 45, Issue 1, pp. W388 - W392
Large biomolecules-proteins and nucleic acids-are composed of building blocks which define their identity, properties and binding capabilities. In order to... 
QUANTUM-CHEMICAL CALCULATIONS | PEPTIDES | RESIDUES | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROTEIN FORCE-FIELD | MOLECULES | Web Server Issue
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2016, Volume 44, Issue 1, pp. W557 - W561
Journal Article
Nucleic acids research, ISSN 0305-1048, 2013, Volume 41, Issue W1, pp. W427 - 431
The CABS-flex server (http://biocomp.chem.uw.edu.pl/CABSflex) implements CABS-model-based protocol for the fast simulations of near-native dynamics of globular... 
REFINEMENT | MACROMOLECULAR STRUCTURES | MOLECULAR-DYNAMICS | RECOGNITION | MODELS | BIOCHEMISTRY & MOLECULAR BIOLOGY | FORCE-FIELD | RELEVANT CONFORMATIONAL TRANSITIONS | WEB SERVER | STRUCTURE PREDICTION | FEATURES | Protein Conformation | Software | Internet | Computer Simulation | Databases, Protein | Molecular Dynamics Simulation
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2017, Volume 45, Issue 1, pp. W331 - W336
The accurate calculation of protein/nucleic acid-ligand interactions or condensed phase properties by force field-based methods require a precise description... 
SOLVATION FREE-ENERGIES | MOLECULAR-DYNAMICS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ATOMIC CHARGES | ENERGETICS | FORCE-FIELD | POTENTIAL FUNCTIONS | MODEL | CHARMM | SIMULATION | PARTIAL CHARGES | Web Server Issue
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2017, Volume 45, Issue 1, pp. W350 - W355
AMMOS2 is an interactive web server for efficient computational refinement of protein-small organic molecule complexes. The AMMOS2 protocol employs... 
QUALITY | DOCKING | DIVERSE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BINDING SITES | DRUG DESIGN | FORCE-FIELD | SCORING FUNCTIONS | SIMULATIONS | AFFINITIES | DISCOVERY | Molecular Docking Simulation - methods | Proteins - metabolism | Water - chemistry | Ligands | Software | Internet | Proteins - chemistry | Binding Sites | Web Server Issue
Journal Article
Journal of Construction Engineering and Management, ISSN 0733-9364, 07/2013, Volume 139, Issue 7, pp. 785 - 794
Journal Article
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 07/2019, Volume 47, Issue W1, pp. W456 - W461
Atomistic molecular dynamics simulations of membrane proteins have been shown to be extremely useful for characterizing the molecular features underlying their... 
FORCE-FIELD | MOLECULAR-DYNAMICS | SIMULATIONS | STRUCTURE REFINEMENT | BIOCHEMISTRY & MOLECULAR BIOLOGY | Web Server Issue
Journal Article
Nucleic acids research, ISSN 0305-1048, 2013, Volume 41, Issue W1, pp. W422 - 426
Post-translational modifications (PTMs) play a key role in numerous cellular processes by directly affecting structure, dynamics and interaction networks of... 
CARBONYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | CHARGES | CHEMISTRY | FORCE-FIELD | AUTOMATION | PARAMETERS | MOLECULAR-DYNAMICS SIMULATIONS | Protein Conformation | Protein Processing, Post-Translational | Software | Internet | Databases, Protein | Molecular Dynamics Simulation
Journal Article
Nucleic acids research, ISSN 0305-1048, 2013, Volume 41, Issue W1, pp. W406 - 411
The CABS-fold web server provides tools for protein structure prediction from sequence only (de novo modeling) and also using alternative templates (consensus... 
DOMAIN | MODELS | RECOGNITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | HOMOLOGY DETECTION | DYNAMICS | FORCE-FIELD | Protein Conformation | Software | Algorithms | Internet
Journal Article