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1. Full Text Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation
by Hu, Gangqing and Tang, Qingsong and Sharma, Suveena and Yu, Fang and Escobar, Thelma M and Muljo, Stefan A and Zhu, Jinfang and Zhao, Keji
Nature Immunology, ISSN 1529-2908, 2013, Volume 14, Issue 11, pp. 1190 - 1198
Although intergenic long noncoding RNAs (lincRNAs) have been linked to gene regulation in various tissues, little is known about lincRNA transcriptomes in the... 
STEM-CELLS | INTERFERON | INTEGRATIVE ANNOTATION | GENE-EXPRESSION | POPULATIONS | IMMUNOLOGY | GENOME-WIDE IDENTIFICATION | TRANSCRIPTION FACTOR | SEQ | CUTTING EDGE | REVEALS | GATA3 Transcription Factor - genetics | GATA3 Transcription Factor - immunology | STAT4 Transcription Factor - metabolism | STAT6 Transcription Factor - genetics | T-Box Domain Proteins - immunology | Th2 Cells - immunology | Transcriptome - immunology | Genetic Loci | Th1 Cells - immunology | RNA, Long Noncoding - immunology | Th1 Cells - metabolism | Th17 Cells - metabolism | Precursor Cells, T-Lymphoid - metabolism | Precursor Cells, T-Lymphoid - cytology | Th17 Cells - cytology | Cell Differentiation | GATA3 Transcription Factor - metabolism | STAT4 Transcription Factor - immunology | Signal Transduction | Gene Expression Regulation - immunology | Mice, Inbred C57BL | Molecular Sequence Annotation | Th2 Cells - cytology | RNA, Long Noncoding - genetics | STAT6 Transcription Factor - metabolism | STAT6 Transcription Factor - immunology | T-Box Domain Proteins - genetics | Th2 Cells - metabolism | T-Box Domain Proteins - metabolism | Animals | Protein Binding | Th17 Cells - immunology | STAT4 Transcription Factor - genetics | Mice | Th1 Cells - cytology | Precursor Cells, T-Lymphoid - immunology | Cell Movement | Physiological aspects | Genetic aspects | Research | Cell differentiation | Gene expression | T cells | Index Medicus | Cell migration
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2. Full Text The Transcription Factor GATA3 Is Critical for the Development of All IL-7Rα-Expressing Innate Lymphoid Cells
by Yagi, Ryoji and Zhong, Chao and Northrup, Daniel L and Yu, Fang and Bouladoux, Nicolas and Spencer, Sean and Hu, Gangqing and Barron, Luke and Sharma, Suveena and Nakayama, Toshinori and Belkaid, Yasmine and Zhao, Keji and Zhu, Jinfang
Immunity, ISSN 1074-7613, 03/2014, Volume 40, Issue 3, pp. 378 - 388
Innate lymphoid cells (ILCs) are critical in innate immune responses to pathogens and lymphoid organ development. Similar to CD4 T helper (Th) cell subsets,... 
ROR-GAMMA-T | INFLAMMATION | RETINOIC-ACID | TYPE-2 IMMUNITY | GENERATION | DIFFERENTIATION | FETAL | IMMUNOLOGY | EXPRESSION | LINEAGE | TISSUE INDUCER CELLS | GATA3 Transcription Factor - genetics | Genetic Predisposition to Disease | Receptors, Interleukin-7 - metabolism | Citrobacter rodentium - immunology | Proto-Oncogene Proteins c-vav - genetics | Gene Expression Regulation | Immunity, Innate - genetics | Lymphocyte Subsets - immunology | Mice, Knockout | Enterobacteriaceae Infections - immunology | Lymphocyte Subsets - metabolism | Models, Immunological | Receptors, Interleukin-7 - genetics | Animals | Enterobacteriaceae Infections - genetics | Mice | GATA3 Transcription Factor - metabolism | Proto-Oncogene Proteins c-vav - metabolism | Index Medicus
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3. Full Text Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types
by Wei, Gang and Abraham, Brian J and Yagi, Ryoji and Jothi, Raja and Cui, Kairong and Sharma, Suveena and Narlikar, Leelavati and Northrup, Daniel L and Tang, Qingsong and Paul, William E and Zhu, Jinfang and Zhao, Keji
Immunity, ISSN 1074-7613, 08/2011, Volume 35, Issue 2, pp. 299 - 311
The transcription factor GATA3 plays an essential role during T cell development and T helper 2 (Th2) cell differentiation. To understand GATA3-mediated gene... 
LINEAGE COMMITMENT | DNA-BINDING | CD4 | FACTOR GATA-3 | FINGER | DIFFERENTIATION | IMMUNOLOGY | TH1 | IDENTIFICATION | EXPRESSION | CHROMATIN OCCUPANCY | GATA3 Transcription Factor - genetics | T-Lymphocyte Subsets - immunology | GATA3 Transcription Factor - immunology | Lymphopoiesis - genetics | Th2 Cells - immunology | DNA Methylation | Mutant Proteins - immunology | GATA3 Transcription Factor - metabolism | Cell Lineage - genetics | Th2 Cells - pathology | Genome-Wide Association Study | Mice, Inbred C57BL | Gene Expression Regulation | Mutant Proteins - genetics | Mice, Transgenic | Mutant Proteins - metabolism | Receptor, Notch1 - metabolism | Transcription Factors - genetics | Receptors, Antigen, T-Cell, alpha-beta - genetics | Th2 Cells - metabolism | Transcription Factors - metabolism | Animals | Histones - genetics | T-Lymphocyte Subsets - pathology | T-Lymphocyte Subsets - metabolism | Genome - immunology | Protein Binding | Mice | Histones - metabolism | Receptors, Antigen, T-Cell, alpha-beta - metabolism | Receptor, Notch1 - genetics | Genetic aspects | DNA binding proteins | T cells | Genetic regulation | Genomics | Studies | Transcription factors | Rodents | Genomes | Gene expression | Experiments | Binding sites | Index Medicus
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4. Full Text Uncovering Early Response of Gene Regulatory Networks in ESCs by Systematic Induction of Transcription Factors
by Nishiyama, Akira and Xin, Li and Sharov, Alexei A and Thomas, Marshall and Mowrer, Gregory and Meyers, Emily and Piao, Yulan and Mehta, Samir and Yee, Sarah and Nakatake, Yuhki and Stagg, Carole and Sharova, Lioudmila and Correa-Cerro, Lina S and Bassey, Uwem and Hoang, Hien and Kim, Eugene and Tapnio, Richard and Qian, Yong and Dudekula, Dawood and Zalzman, Michal and Li, Manxiang and Falco, Geppino and Yang, Hsih-Te and Lee, Sung-Lim and Monti, Manuela and Stanghellini, Ilaria and Islam, Md. Nurul and Nagaraja, Ramaiah and Goldberg, Ilya and Wang, Weidong and Longo, Dan L and Schlessinger, David and Ko, Minoru S.H
Cell Stem Cell, ISSN 1934-5909, 2009, Volume 5, Issue 4, pp. 420 - 433
To examine transcription factor (TF) network(s), we created mouse ESC lines, in each of which 1 of 50 TFs tagged with a FLAG moiety is inserted into a... 
STEMCELL | SIGNALING PATHWAYS | DEVELOPMENTAL REGULATORS | CHROMATIN | EMBRYONIC STEM-CELLS | MOUSE EMBRYOS | GENOME-WIDE | SELF-RENEWAL | PLURIPOTENCY | DIFFERENTIATION | EXPRESSION | CELL & TISSUE ENGINEERING | CELL BIOLOGY | GATA3 Transcription Factor - genetics | Embryonic Stem Cells - metabolism | Embryonic Stem Cells - cytology | Immunoprecipitation | Oligonucleotide Array Sequence Analysis | Homeodomain Proteins - metabolism | GATA3 Transcription Factor - physiology | Gene Regulatory Networks - physiology | SOX9 Transcription Factor - physiology | Cell Differentiation - genetics | Basic Helix-Loop-Helix Transcription Factors - metabolism | Chromatin Immunoprecipitation | Kruppel-Like Transcription Factors - metabolism | Cell Differentiation - physiology | GATA3 Transcription Factor - metabolism | Proto-Oncogene Proteins - metabolism | SOX9 Transcription Factor - metabolism | Cell Line | Basic Helix-Loop-Helix Transcription Factors - physiology | Transcription Factors - physiology | Basic Helix-Loop-Helix Transcription Factors - genetics | Gene Regulatory Networks - genetics | Kruppel-Like Transcription Factors - physiology | Proto-Oncogene Proteins - genetics | Transcription Factors - genetics | Homeodomain Proteins - genetics | Transcription Factors - metabolism | Animals | Proto-Oncogene Proteins - physiology | Mice | CDX2 Transcription Factor | Homeodomain Proteins - physiology | Kruppel-Like Transcription Factors - genetics | SOX9 Transcription Factor - genetics | Index Medicus
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5. Full Text IL-4 inhibits TGF-β-induced Foxp3 + T cells and, together with TGF-β, generates IL-9 + IL-10 + Foxp3 − effector T cells
by Oukka, Mohamed and Mitsdoerffer, Meike and Strom, Terry B and Kuchroo, Vijay K and Elyaman, Wassim and Dardalhon, Valérie and Galileos, George and Awasthi, Amit and Sobel, Raymond A and Ho, I-Cheng and Kwon, Hyoung and Gao, Wenda and Khoury, Samia
Nature Immunology, ISSN 1529-2908, 12/2008, Volume 9, Issue 12, pp. 1347 - 1355
Transcription factor Foxp3 is critical for generating regulatory T cells (T-reg cells). Transforming growth factor-beta (TGF-beta) induces Foxp3 and... 
SCHISTOSOMIASIS | TRANSCRIPTION FACTOR FOXP3 | CONTROL INTESTINAL INFLAMMATION | PROLIFERATION | INTERLEUKIN-10 | DIFFERENTIATION | INDUCTION | IMMUNOLOGY | EXPRESSION | HYPERRESPONSIVENESS | TRANSGENIC MICE | Forkhead Transcription Factors - immunology | T-Lymphocyte Subsets - immunology | Transforming Growth Factor beta - immunology | T-Lymphocyte Subsets - cytology | GATA3 Transcription Factor - immunology | Interleukin-4 - metabolism | Mice, Transgenic | Adoptive Transfer | STAT6 Transcription Factor - metabolism | STAT6 Transcription Factor - immunology | T-Lymphocytes, Regulatory - immunology | Cell Differentiation - immunology | Interleukin-4 - immunology | Lymphocyte Activation - immunology | Animals | Forkhead Transcription Factors - metabolism | T-Lymphocytes, Regulatory - cytology | Interleukin-10 - metabolism | Interleukin-9 - metabolism | Mice | GATA3 Transcription Factor - metabolism | Interleukin-10 - immunology | Interleukin-9 - immunology | Transforming Growth Factor beta - metabolism | Index Medicus
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6. Full Text The transcription factor Bcl11b is specifically expressed in group 2 innate lymphoid cells and is essential for their development
by Yu, Yong and Wang, Cui and Clare, Simon and Wang, Juexuan and Lee, Song-Choon and Brandt, Cordelia and Burke, Shannon and Lu, Liming and He, Daqian and Jenkins, Nancy A and Copeland, Neal G and Dougan, Gordon and Liu, Pentao
Journal of Experimental Medicine, ISSN 0022-1007, 2015, Volume 212, Issue 6, pp. 865 - 874
Group 2 innate lymphoid cells (ILCs), or ILC2s, are a subset of recently identified ILCs, which play important roles in innate immunity by producing type 2... 
MEDICINE, RESEARCH & EXPERIMENTAL | CYTOKINES | FACTOR GATA3 | INFLAMMATION | TYPE-2 IMMUNITY | ALPHA | CHECKPOINT | DIFFERENTIATION | IMMUNOLOGY | LINEAGE | T-CELLS | LYMPHOCYTES | Interleukin-1 Receptor-Like 1 Protein | Male | Gene Expression Profiling | Receptors, Interleukin - metabolism | Flow Cytometry | Chromatin Immunoprecipitation | Gene Deletion | Female | GATA3 Transcription Factor - metabolism | Genes, Reporter | Repressor Proteins - metabolism | Lymphocytes - metabolism | Tumor Suppressor Proteins - metabolism | Zinc Fingers | Cell Separation | Mice, Inbred C57BL | Gene Expression Regulation | Mice, Transgenic | Lymphocytes - cytology | Immunity, Innate | Cell Lineage | Animals | Hematopoietic Stem Cells - cytology | Mice | Inducible T-Cell Co-Stimulator Protein - metabolism | Index Medicus | Brief Definitive Report
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7. Full Text Enhancer Activation Requires trans-Recruitment of a Mega Transcription Factor Complex
by Liu, Zhijie and Merkurjev, Daria and Yang, Feng and Li, Wenbo and Oh, Soohwan and Friedman, Meyer J and Song, Xiaoyuan and Zhang, Feng and Ma, Qi and Ohgi, Kenneth A and Krones, Anna and Rosenfeld, Michael G
Cell, ISSN 0092-8674, 10/2014, Volume 159, Issue 2, pp. 358 - 373
Enhancers provide critical information directing cell-type-specific transcriptional programs, regulated by binding of signal-dependent transcription factors... 
BREAST-CANCER | DNA-BINDING | RETINOIC ACID | SUPER-ENHANCERS | PHOSPHORYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESTROGEN-RECEPTOR-ALPHA | CELL IDENTITY | GENOME-WIDE ANALYSIS | GENE-EXPRESSION | REGULATORS | CELL BIOLOGY | Transcription Factors - metabolism | Multiprotein Complexes - metabolism | Enhancer Elements, Genetic | Humans | Gene Expression Regulation | Estrogen Receptor alpha - metabolism | Estrogens - metabolism | GATA3 Transcription Factor - metabolism | Hepatocyte Nuclear Factor 3-alpha - metabolism | Employee recruitment | Enzymes | RNA | Estrogen | Index Medicus
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8. Full Text Maternal warmth buffers the effects of low early-life socioeconomic status on pro-inflammatory signaling in adulthood
by Chen, E and Miller, G.E and Kobor, M.S and Cole, S.W
Molecular Psychiatry, ISSN 1359-4184, 07/2011, Volume 16, Issue 7, pp. 729 - 737
The notion that family support may buffer individuals under adversity from poor outcomes has been theorized to have important implications for mental and... 
socioeconomic status | immune | maternal warmth | C-REACTIVE PROTEIN | PSYCHIATRY | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESILIENCE | SOCIAL-ENVIRONMENT | MALTREATED CHILDREN | ACUTE CORONARY SYNDROMES | MAJOR DEPRESSION | NEUROSCIENCES | STRESS RESPONSES | CREB-PHOSPHORYLATION | PSYCHIATRIC-DISORDERS | HEALTH | Oligonucleotide Array Sequence Analysis | Transcription Factor AP-1 - genetics | Humans | Male | ets-Domain Protein Elk-1 - genetics | Gene Expression Profiling | Transcription Factor AP-1 - metabolism | Socioeconomic Factors | CREB-Binding Protein - genetics | CREB-Binding Protein - metabolism | C-Reactive Protein - metabolism | Octamer Transcription Factors - genetics | ets-Domain Protein Elk-1 - metabolism | Adult | Female | GATA3 Transcription Factor | Interleukin-6 - metabolism | Octamer Transcription Factors - metabolism | Interleukin-6 - genetics | Signal Transduction | Gene Expression Regulation - immunology | Computational Biology | Transcription Factors - genetics | Mother-Child Relations | Social Class | Transcription Factors - metabolism | NF-kappa B - genetics | Family | Social classes | Inflammation | Research | Social aspects | Health aspects | Mental illness | Risk factors | Index Medicus
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9. Full Text MicroRNA-155 Modulates Treg and Th17 Cells Differentiation and Th17 Cell Function by Targeting SOCS1
by Yao, Rui and Ma, Yu-Lan and Liang, Wei and Li, Huan-Huan and Ma, Zhi-Jun and Yu, Xian and Liao, Yu-Hua
PLoS ONE, ISSN 1932-6203, 10/2012, Volume 7, Issue 10, pp. e46082 - e46082
MicroRNA (miR)-155 is a critical player in both innate and adaptive immune responses. It can influence CD4(+) T cell lineage choice. To clarify the role of... 
PREVENTS DEVELOPMENT | SUPPRESSOR | ACTIVATION | MULTIDISCIPLINARY SCIENCES | STAT3 | T(H)17 | CD4(+) T-CELLS | RECEPTOR | ABSENCE | INDUCTION | EXPRESSION | GATA3 Transcription Factor - genetics | T-Lymphocytes, Regulatory - metabolism | Transforming Growth Factor beta1 - metabolism | STAT Transcription Factors - metabolism | Suppressor of Cytokine Signaling 1 Protein | Janus Kinases - metabolism | Interferon-gamma - metabolism | Cell Differentiation - genetics | Th17 Cells - metabolism | Base Sequence | T-Lymphocytes, Regulatory - cytology | Interleukin-10 - metabolism | Th17 Cells - cytology | Interferon-gamma - genetics | Interleukin-4 - genetics | GATA3 Transcription Factor - metabolism | Nuclear Receptor Subfamily 1, Group F, Member 3 - genetics | Signal Transduction | Interleukin-4 - metabolism | Gene Expression Regulation | Suppressor of Cytokine Signaling Proteins - genetics | Forkhead Transcription Factors - genetics | T-Box Domain Proteins - genetics | T-Box Domain Proteins - metabolism | Interleukin-17 - metabolism | Animals | Mice | MicroRNAs - genetics | Smad Proteins - metabolism | Physiological aspects | Genetic aspects | MicroRNA | Research | Cell differentiation | T cells | Smad5 protein | Smad protein | Transcription factors | Transcription | Laboratories | Interleukin | Differentiation (biology) | Helper cells | Science | Homology | Lymphocytes T | Inflammatory diseases | Signal transduction | Immunology | Transfection | Lymphocytes | Smad2 protein | Atherosclerosis | CD25 antigen | Janus kinase | Cardiology | Growth factors | Immune system | Function analysis | Lupus | Immune response | Cytokines | MiRNA | Cell lineage | T cell receptors | Gene expression | Ribonucleic acid--RNA | Suppressors | CD4 antigen | Signaling | MicroRNAs | Interleukin 10 | Index Medicus | RNA | Ribonucleic acid
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10. Full Text Nuclear factor of activated t cells regulates the expression of interleukin-4 in Th2 cells in an All-or-none fashion
by Köck, Juliana and Kreher, Stephan and Lehmann, Katrin and Riedel, René and Bardua, Markus and Lischke, Timo and Jargosch, Manja and Haftmann, Claudia and Bendfeldt, Hanna and Hatam, Farahnaz and Mashreghi, Mir-Farzin and Baumgrass, Ria and Radbruch, Andreas and Chang, Hyun-Dong
Journal of Biological Chemistry, ISSN 0021-9258, 09/2014, Volume 289, Issue 39, pp. 26752 - 26761
Th2 memory lymphocytes have imprinted their Il4 genes epigenetically for expression in dependence of T cell receptor restimulation. However, in a given... 
LOCUS-CONTROL REGION | PROBABILISTIC REGULATION | MEMORY | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION FACTOR NFAT1 | HELPER-CELLS | DEPHOSPHORYLATION | GENE-EXPRESSION | IL-4 EXPRESSION | GATA-3 | LYMPHOCYTES | Cell Nucleus - immunology | GATA3 Transcription Factor - genetics | Phosphorylation - physiology | Active Transport, Cell Nucleus - physiology | E1A-Associated p300 Protein - immunology | GATA3 Transcription Factor - immunology | E1A-Associated p300 Protein - genetics | E1A-Associated p300 Protein - metabolism | STAT6 Transcription Factor - genetics | Th2 Cells - immunology | DNA Helicases - immunology | Transcription Factor RelA - genetics | Interleukin-4 - biosynthesis | Cell Nucleus - metabolism | NFATC Transcription Factors - immunology | Adaptor Proteins, Signal Transducing - immunology | Transcription Factor RelA - immunology | Receptors, Antigen, T-Cell - immunology | Interleukin-4 - genetics | Nuclear Proteins - genetics | Response Elements - physiology | Transcription Factors - immunology | DNA Helicases - genetics | GATA3 Transcription Factor - metabolism | Receptors, Antigen, T-Cell - metabolism | NFATC Transcription Factors - metabolism | Gene Expression Regulation - physiology | Mice, Transgenic | Nuclear Proteins - metabolism | Th2 Cells - cytology | STAT6 Transcription Factor - metabolism | Transcription Factors - genetics | Nuclear Proteins - immunology | STAT6 Transcription Factor - immunology | Th2 Cells - metabolism | Transcription Factors - metabolism | DNA Helicases - metabolism | Interleukin-4 - immunology | Animals | Cell Nucleus - genetics | Transcription Factor RelA - metabolism | Adaptor Proteins, Signal Transducing - genetics | Mice | Mice, Inbred BALB C | Receptors, Antigen, T-Cell - genetics | Adaptor Proteins, Signal Transducing - metabolism | NFATC Transcription Factors - genetics | Index Medicus | NFAT Transcription Factor | Immunology | T-cell | T-cell Receptor (TCR) | Calcineurin | Cytokine
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11. Full Text Dynamic expression of transcription factors T-bet and GATA-3 by regulatory T cells maintains immunotolerance
by Yu, Fang and Sharma, Suveena and Edwards, Julie and Feigenbaum, Lionel and Zhu, Jinfang
Nature Immunology, ISSN 1529-2908, 01/2015, Volume 16, Issue 2, pp. 197 - 206
Regulatory T cells (T-reg cells) can express the transcription factors T-bet and GATA-3, but the function of this expression and whether such cells represent... 
RESPONSES | ACTIVATION | ROR-GAMMA-T | INFLAMMATION | HELPER-CELLS | IN-VIVO | FACTOR FOXP3 | DIFFERENTIATION | IMMUNOLOGY | SUPPRESSION | PROGRAM | Autoimmunity | GATA3 Transcription Factor - genetics | Enzyme-Linked Immunosorbent Assay | Cells, Cultured | Gene Expression Regulation | T-Box Domain Proteins - genetics | T-Box Domain Proteins - metabolism | T-Lymphocytes, Regulatory - immunology | Animals | Flow Cytometry | Immune Tolerance - genetics | Mice | Colitis - immunology | GATA3 Transcription Factor - metabolism | Disease Models, Animal | Transcription factors | Immune response | Genetic research | Genetic aspects | Research | Properties | T cells | Genetic regulation | Index Medicus
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