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Nature Protocols, ISSN 1754-2189, 09/2011, Volume 6, Issue 9, pp. 1290 - 1307
Over the past decade, a growing community of researchers has emerged around the use of constraint-based reconstruction and analysis (COBRA) methods to... 
NETWORK | GENOME-SCALE RECONSTRUCTION | HIGH-THROUGHPUT | 2-DIMENSIONAL ANNOTATION | TUBERCULOSIS | ALTERNATE OPTIMAL-SOLUTIONS | ESCHERICHIA-COLI | GENES | BIOCHEMICAL RESEARCH METHODS | OPTIMIZATION | IDENTIFICATION | Computational Biology - methods | Software | Algorithms | Metabolic Networks and Pathways | Index Medicus
Journal Article
Nature Communications, ISSN 2041-1723, 10/2016, Volume 7, Issue 1, pp. 13091 - 13091
Rapid growth in size and complexity of biological data sets has led to the 'Big Data to Knowledge' challenge. We develop advanced data integration methods for... 
EXIT TUNNEL | YEAST | GENOME-SCALE MODELS | RECONSTRUCTION | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | PROTEOME QUANTIFICATION | TRANSLATION | EXPRESSION | SYSTEMS BIOLOGY | RIBOSOME | Index Medicus
Journal Article
New Phytologist, ISSN 0028-646X, 2019
Photoacclimation consists of short- and long-term strategies used by photosynthetic organisms to adapt to dynamic light environments. Observable... 
photorespiration | genome-scale modeling | flux balance | Phaeodactylum tricornutum | analysis | diatom | energy metabolism
Journal Article
New Biotechnology, ISSN 1871-6784, 05/2019, Volume 50, pp. 52 - 59
Metabolic flux analysis based on C-derived constraints has proved to be a powerful method for quantitative physiological characterisation of one of the most... 
Glycerol | Pichia pastorisKomagataella spp | C-based metabolic flux analysis | Genome-Scale metabolic model
Journal Article
Molecular Systems Biology, ISSN 1744-4292, 01/2016, Volume 12, Issue 1, pp. 855 - n/a
The relative importance of regulation at the mRNA versus protein level is subject to ongoing debate. To address this question in a dynamic system, we mapped... 
ER stress | mammalian proteomics | mass spectrometry | Central Dogma | PECA | Protein expression | Ribonucleic acid--RNA | Molecular biology | Gene expression | Protein folding | Index Medicus
Journal Article
Nucleic acids research, ISSN 0305-1048, 06/2019, Volume 47, Issue 10, pp. 5155 - 5169
Eukaryotic genomes are replicated under the control of a highly sophisticated program during the restricted time period corresponding to S phase. The most... 
ORIGINS | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | EUKARYOTIC DNA-REPLICATION | REPLICONS | ARCHITECTURE | LINKS | WIDE | ASSOCIATION | DOMAINS | GENOME-SCALE ANALYSIS | Life Sciences | Genetics | Computer Science | Genome Integrity, Repair and
Journal Article
CURRENT OPINION IN BIOTECHNOLOGY, ISSN 0958-1669, 12/2015, Volume 36, pp. 91 - 97
Metabolic pathway models provide the foundation for quantitative studies of cellular physiology through the measurement of intracellular metabolic fluxes. For... 
DISTRIBUTIONS | GENOME-SCALE MODELS | ISOTOPIC TRACERS | NETWORK RECONSTRUCTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ESCHERICHIA-COLI | BIOCHEMICAL RESEARCH METHODS | CARBON METABOLISM | CLOSTRIDIUM-ACETOBUTYLICUM | MAMMALIAN-CELLS | MASS-SPECTROMETRY | UNITS EMU
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