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1. Full Text Network Integration of Parallel Metabolic and Transcriptional Data Reveals Metabolic Modules that Regulate Macrophage Polarization
by Jha, Abhishek K and Huang, Stanley Ching-Cheng and Sergushichev, Alexey and Lampropoulou, Vicky and Ivanova, Yulia and Loginicheva, Ekaterina and Chmielewski, Karina and Stewart, Kelly M and Ashall, Juliet and Everts, Bart and Pearce, Edward J and Driggers, Edward M and Artyomov, Maxim N
Immunity, ISSN 1074-7613, 03/2015, Volume 42, Issue 3, pp. 419 - 430
Macrophage polarization involves a coordinated metabolic and transcriptional rewiring that is only partially understood. By using an integrated high-throughput... 
IMMUNITY | CELLS | ACTIVATION | INFLAMMATION | NITRIC-OXIDE | INNATE | GLYCOSYLATION | IMMUNOLOGY | Glutamine - deficiency | Aspartic Acid - immunology | Argininosuccinic Acid - immunology | Mitochondria - immunology | Chemokine CCL22 - immunology | Metabolic Networks and Pathways - immunology | Mitochondria - genetics | Argininosuccinic Acid - metabolism | Gene Regulatory Networks - immunology | Isocitrate Dehydrogenase - immunology | Macrophages - immunology | Uridine Diphosphate N-Acetylglucosamine - metabolism | Nitric Oxide - immunology | Macrophages - classification | Aspartate Aminotransferase, Mitochondrial - immunology | Interleukin-6 - genetics | Signal Transduction | Gene Expression Regulation | Isocitrate Dehydrogenase - genetics | Glycosylation | Mitochondria - metabolism | Macrophages - cytology | Immunity, Innate | Citric Acid Cycle | Uridine Diphosphate N-Acetylglucosamine - immunology | Chemokine CCL22 - genetics | Macrophages - metabolism | Metabolic Networks and Pathways - genetics | Animals | Interleukin-6 - immunology | Transcription, Genetic - immunology | Aspartic Acid - metabolism | Mice | Aspartate Aminotransferase, Mitochondrial - genetics | Nitric Oxide - metabolism | Enzymes | Tracers (Biology) | Analysis | Nitric oxide | Physiological aspects | Aspartate | Genetic aspects | Genetic transcription | Macrophages | Glutamine | Metabolites | Rodents | Scientific imaging | Metabolism | Labeling | Mass spectrometry
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2. Full Text Metabolic Regulation of T Lymphocytes
by MacIver, Nancie J and Michalek, Ryan D and Rathmell, Jeffrey C
Annual Review of Immunology, ISSN 0732-0582, 3/2013, Volume 31, Issue 1, pp. 259 - 283
T cell activation leads to dramatic shifts in cell metabolism to protect against pathogens and to orchestrate the action of other immune cells. Quiescent T... 
glucose | aerobic glycolysis | T cell | Glut1 | oxidative phosphorylation | Aerobic glycolysis | Glucose | Oxidative phosphorylation | C-MYC-GENE | ACTIVATED PROTEIN-KINASE | MITOCHONDRIAL MUTAGENESIS | ERR-ALPHA | PHOSPHATIDYLINOSITOL 3-KINASE | NECROSIS-FACTOR-ALPHA | IMMUNOLOGY | OXIDATIVE-METABOLISM | BLOOD MONONUCLEAR-CELLS | ESTROGEN-RELATED RECEPTOR | INSULIN-RESISTANCE | Neoplasms - metabolism | T-Lymphocyte Subsets - immunology | Gene Regulatory Networks - genetics | T-Lymphocyte Subsets - cytology | Humans | Glycolysis - genetics | Phosphorylation - genetics | Animals | Neoplasms - genetics | Neoplasms - immunology | T-Lymphocyte Subsets - metabolism | Phosphorylation - immunology | Gene Regulatory Networks - immunology | Glycolysis - immunology | Cell proliferation | Physiological aspects | Cell metabolism | Research | T cells
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3. Full Text Peripheral CD4+ T-cell differentiation regulated by networks of cytokines and transcription factors
by Zhu, Jinfang and Paul, William E
Immunological Reviews, ISSN 0105-2896, 11/2010, Volume 238, Issue 1, pp. 247 - 262
CD4+ T cells, also known as T-helper (Th) cells, play an important role in orchestrating adaptive immune responses to various infectious agents. They are also... 
Transcription factors | T-cell differentiation | T-helper cells | Cytokines | TGF-BETA | TH2 CELLS | ROR-GAMMA-T | transcription factors | CD4(+) T-CELLS | IMMUNOLOGY | HYPER-IGE SYNDROME | LOCUS-CONTROL REGION | GROWTH-FACTOR-BETA | FOLLICULAR-HELPER-CELLS | IN-VIVO | GENE-EXPRESSION | cytokines | CD4-Positive T-Lymphocytes - immunology | Receptor Cross-Talk - immunology | T-Lymphocyte Subsets - immunology | Cell Lineage | Signal Transduction - immunology | Feedback, Physiological | Animals | Humans | Cell Differentiation | Gene Regulatory Networks - immunology | Transcription Factors - immunology | Cytokines - immunology | Cell activation | Helper cells | Allergic diseases | Lymphocytes T | Differentiation | double prime T-cell receptor | CD4 antigen | T helper cells | T cell differentiation
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4. Full Text Developmental gene networks: A triathlon on the course to T cell identity
by Yui, Mary A and Rothenberg, Ellen V
Nature Reviews Immunology, ISSN 1474-1733, 2014, Volume 14, Issue 8, pp. 529 - 545
Cells acquire their ultimate identities by activating combinations of transcription factors that initiate and sustain expression of the appropriate cell... 
LINEAGE COMMITMENT | ROR-GAMMA-T | BETA-SELECTION CHECKPOINT | CIS-REGULATORY ELEMENTS | NONOBESE DIABETIC MICE | ALPHA-BETA | ACUTE LYMPHOBLASTIC-LEUKEMIA | HEMATOPOIETIC STEM-CELLS | ADULT-MOUSE THYMUS | IMMUNOLOGY | TRANSCRIPTION FACTOR GATA-3 | Humans | Thymus Gland - cytology | Receptor, Notch1 - metabolism | Stem Cells - metabolism | Cell Differentiation - immunology | Signal Transduction - immunology | Animals | Leukemia, T-Cell - genetics | T-Lymphocytes - cytology | Cell Transformation, Neoplastic - genetics | Receptors, Antigen, T-Cell - immunology | T-Lymphocytes - immunology | Thymus Gland - immunology | Mice | Cell Transformation, Neoplastic - pathology | Gene Regulatory Networks - immunology | Leukemia, T-Cell - pathology | Transcription Factors - immunology | Cell Lineage - immunology | Genetic research | Genetic aspects | Research | T cells | Gene expression
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5. Full Text A genome-wide regulatory network identifies key transcription factors for memory CD8 + T-cell development
by Hu, Guangan and Chen, Jianzhu
Nature Communications, ISSN 2041-1723, 12/2013, Volume 4, Issue 1, pp. 2830 - 2830
Memory CD8(+) T-cell development is defined by the expression of a specific set of memory signature genes. Despite recent progress, many components of the... 
EFFECTOR | BLIMP-1 | ACTIVATION | CYTOKINES | TGF-BETA | INFLAMMATION | MULTIDISCIPLINARY SCIENCES | GENERATION | DIFFERENTIATION | EXPRESSION | BACH2 | CD8-Positive T-Lymphocytes - cytology | Genome-Wide Association Study | SOXC Transcription Factors - genetics | Mice, Inbred C57BL | Mice, Transgenic | Basic-Leucine Zipper Transcription Factors - genetics | Transcription Factors - genetics | Cell Differentiation - genetics | Cell Differentiation - immunology | Animals | Dogs | Madin Darby Canine Kidney Cells | Mice | CD8-Positive T-Lymphocytes - immunology | Gene Regulatory Networks - immunology | Immunologic Memory - genetics
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6. Full Text The microRNA miR-155 controls CD8+ T cell responses by regulating interferon signaling
by Gracias, Donald T and Stelekati, Erietta and Hope, Jennifer L and Boesteanu, Alina C and Doering, Travis A and Norton, Jillian and Mueller, Yvonne M and Fraietta, Joseph A and Wherry, E John and Turner, Martin and Katsikis, Peter D
Nature Immunology, ISSN 1529-2908, 06/2013, Volume 14, Issue 6, pp. 593 - 602
We found upregulation of expression of the microRNA miR-155 in primary effector and effector memory CD8(+) T cells, but low miR-155 expression in naive and... 
IFN | MEMORY | CLONAL EXPANSION | STAT3 | PROLIFERATION | INFECTION | DIFFERENTIATION | IMMUNOLOGY | MODULATION | CUTTING EDGE | LYMPHOCYTES | Oligonucleotide Array Sequence Analysis | Suppressor of Cytokine Signaling 1 Protein | Immunoblotting | MicroRNAs - metabolism | Gene Expression Profiling | Interferon Regulatory Factor-7 - genetics | Interferons - immunology | Orthomyxoviridae - immunology | Orthomyxoviridae Infections - genetics | Signal Transduction - immunology | STAT1 Transcription Factor - metabolism | Flow Cytometry | RNA Interference | <