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1. Full Text Robust enumeration of cell subsets from tissue expression profiles
by Newman, Aaron M and Liu, Chih Long and Green, Michael R and Gentles, Andrew J and Feng, Weiguo and Xu, Yue and Hoang, Chuong D and Diehn, Maximilian and Alizadeh, Ash A
Nature Methods, ISSN 1548-7091, 04/2015, Volume 12, Issue 5, pp. 453 - 457
We introduce CIBERSORT, a method for characterizing cell composition of complex tissues from their gene expression profiles. When applied to enumeration of... 
REGRESSION | GENE-EXPRESSION | DECONVOLUTION | SELECTION | BIOCHEMICAL RESEARCH METHODS | Tissue Preservation - methods | Reproducibility of Results | Humans | Transcriptome | Gene Expression Regulation - physiology | Palatine Tonsil - cytology | RNA - genetics | Palatine Tonsil - metabolism | RNA - classification | Biomarkers | Software | Tissue Culture Techniques - methods | RNA - metabolism | Cell research | Identification and classification | Cells | Methods | Tissue | Cellular biology | Gene expression | Bioinformatics | Index Medicus
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2. Full Text MicroRNA expression profiles classify human cancers
by Getz, Gad and Peck, David and Sweet-Cordero, Alejandro and Ebert, Benjamin L and Golub, Todd R and Miska, Eric A and Lu, Jun and Lamb, Justin and Jacks, Tyler and Horvitz, H. Robert and Downing, James R and Alvarez-Saavedra, Ezequiel and Mak, Raymond H and Ferrando, Adolfo A
Nature, ISSN 0028-0836, 06/2005, Volume 435, Issue 7043, pp. 834 - 838
Recent work has revealed the existence of a class of small non-coding RNA species, known as microRNAs (miRNAs), which have critical functions across various... 
STEM-CELLS | CAENORHABDITIS-ELEGANS | SIGNATURES | RNA | MULTIDISCIPLINARY SCIENCES | ACUTE LYMPHOBLASTIC-LEUKEMIA | GENE-EXPRESSION | DIFFERENTIATION | ACCUMULATION | MICROARRAYS | IDENTIFICATION | Animals | Flow Cytometry | Neoplasms - genetics | MicroRNAs - analysis | Humans | Sensitivity and Specificity | Gene Expression Regulation, Neoplastic | Neoplasms - classification | Gene Expression Profiling | MicroRNAs - genetics | Neoplasms - diagnosis | Neoplasms - pathology | Gene expression | Medical diagnosis | Ribonucleic acid--RNA | Ribonucleic acid | Cancer | Index Medicus
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3. Full Text MicroRNA expression profiles of trophoblastic cells
by Morales-Prieto, D.M and Chaiwangyen, W and Ospina-Prieto, S and Schneider, U and Herrmann, J and Gruhn, B and Markert, U.R
Placenta, ISSN 0143-4004, 2012, Volume 33, Issue 9, pp. 725 - 734
Abstract Background MicroRNAs (miRNAs) are small single-stranded RNA molecules working as post-transcriptional modulators of gene expression. Trophoblast cells... 
Internal Medicine | Obstetrics and Gynecology | Pregnancy | MicroRNA | Placenta | C19MC | Choriocarcinoma cells | C14MC | Trophoblast cells | PROTEIN | DOWN-REGULATION | DEVELOPMENTAL BIOLOGY | CANCER | LINES | OBSTETRICS & GYNECOLOGY | PLURIPOTENT STEM-CELLS | HEPATOCELLULAR-CARCINOMA | INVASION | REPRODUCTIVE BIOLOGY | INHIBITS PROLIFERATION | TISSUES | Cell Line | Humans | Gene Expression Profiling | Pregnancy Trimester, First | Pregnancy Trimester, Third | Choriocarcinoma | MicroRNAs - analysis | Polymerase Chain Reaction | Cell Line, Tumor | Female | Placenta - chemistry | Cell Line, Transformed | Trophoblasts - chemistry | Gene expression | Genes | Index Medicus
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4. Full Text MicroRNA Expression Profiles in Serous Ovarian Carcinoma
by Eun Ji Nam and Heejei Yoon and Sang Wun Kim and Hoguen Kim and Young Tae Kim and Jae Hoon Kim and Jae Wook Kim and Sunghoon Kim
Clinical Cancer Research, ISSN 1078-0432, 05/2008, Volume 14, Issue 9, pp. 2690 - 2695
Purpose: Although microRNAs have recently been recognized as riboregulators of gene expression, little is known about microRNA expression profiles in serous... 
ovarian cancer | microRNA | prognosis | HUMAN LUNG CANCERS | RNA | ONCOLOGY | PROTEIN EXPRESSION | GROWTH | GENES | DOWN-REGULATION | CHRONIC LYMPHOCYTIC-LEUKEMIA | CELL-PROLIFERATION | IDENTIFICATION | TUMORS | Prognosis | Oligonucleotide Array Sequence Analysis | Humans | Cystadenocarcinoma, Serous - metabolism | Kaplan-Meier Estimate | MicroRNAs - metabolism | Gene Expression Profiling | Cystadenocarcinoma, Serous - genetics | Ovarian Neoplasms - mortality | Ovarian Neoplasms - genetics | Cystadenocarcinoma, Serous - mortality | Female | MicroRNAs - genetics | Ovarian Neoplasms - metabolism | Ovary - metabolism | Index Medicus
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5. Full Text Characterization of microRNA expression profiles in normal human tissues
by Liang, Yu and Ridzon, Dana and Wong, Linda and Chen, Caifu
BMC Genomics, ISSN 1471-2164, 06/2007, Volume 8, Issue 1, pp. 166 - 166
Background: Measuring the quantity of miRNAs in tissues of different physiological and pathological conditions is an important first step to investigate the... 
HOST GENES | GENOMICS | CANCERS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MOUSE | GENETICS & HEREDITY | GENE-EXPRESSION | MIRNAS | DIFFERENTIATION | IDENTIFICATION | CELL | RESOURCE | Regression Analysis | MicroRNAs - metabolism | Gene Expression Profiling | Humans | Computational Biology | Physiological aspects | Genetic aspects | Research | RNA | Gene expression | Tissues | Index Medicus
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6. Full Text Gene-Expression Profiles in Hereditary Breast Cancer
by Hedenfalk, Ingrid and Duggan, David and Chen, Yidong and Radmacher, Michael and Bittner, Michael and Simon, Richard and Meltzer, Paul and Gusterson, Barry and Esteller, Manel and Raffeld, Mark and Yakhini, Zohar and Ben-Dor, Amir and Dougherty, Edward and Kononen, Juha and Bubendorf, Lukas and Fehrle, Wilfrid and Pittaluga, Stefania and Gruvberger, Sofia and Loman, Niklas and Johannsson, Oskar and Olsson, Håkan and Wilfond, Benjamin and Sauter, Guido and Kallioniemi, Olli-P and Borg, Åke and Trent, Jeffrey
The New England Journal of Medicine, ISSN 0028-4793, 02/2001, Volume 344, Issue 8, pp. 539 - 548
Inheritance of a mutant BRCA1 or BRCA2 gene (numbers 113705 and 600185, respectively, in Online Mendelian Inheritance in Man, a catalogue of inherited... 
MEDICINE, GENERAL & INTERNAL | BRCA2 MUTATIONS | GERM-LINE MUTATIONS | FAMILIES | SUSCEPTIBILITY GENE | SPORADIC BREAST | FOLLOW-UP | GRADE | OVARIAN-CANCER | LINKAGE | CARRIERS | Oligonucleotide Array Sequence Analysis | Humans | DNA, Complementary - genetics | Gene Expression Regulation, Neoplastic | RNA, Messenger - analysis | Gene Expression Profiling | DNA Methylation | RNA, Neoplasm - analysis | Germ-Line Mutation | DNA, Neoplasm - analysis | Genes, BRCA1 | Neoplasm Proteins - genetics | DNA, Complementary - analysis | Gene Expression | Neoplasm Proteins - biosynthesis | RNA, Messenger - genetics | Genotype | Transcription Factors - biosynthesis | Transcription Factors - genetics | Algorithms | Breast Neoplasms - genetics | Breast Neoplasms - pathology | BRCA2 Protein | Heterozygote | DNA, Neoplasm - genetics | Gene expression | Breast cancer | Genetic aspects | Genetics | Mutation | Tumors | Ovarian cancer | BRCA2 gene | BRCA1 gene | Index Medicus | Abridged Index Medicus
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7. Full Text CircaDB: A database of mammalian circadian gene expression profiles
by Pizarro, Angel and Hayer, Katharina and Lahens, Nicholas F and Hogenesch, John B
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D1009 - D1013
CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each... 
SYSTEM | ACTIVATED PROTEIN-KINASE | REV-ERB | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | DISEASE | COMPONENTS | IDENTIFICATION | CLOCK | BMAL1 | Algorithms | Animals | Humans | Circadian Rhythm - genetics | Databases, Genetic | Gene Expression Profiling | Mice | Internet | Index Medicus
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8. Full Text MicroRNA Expression Profiles Predictive of Human Renal Allograft Status
by Dany Anglicheau and Vijay K. Sharma and Ruchuang Ding and Aurélie Hummel and Catherine Snopkowski and Darshana Dadhania and Surya V. Seshan and Manikkam Suthanthiran and Ralph M. Steinman
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2009, Volume 106, Issue 13, pp. 5330 - 5335
Immune rejection of organ transplants is a life-threatening complication and is exemplified by alterations in the expression of proteinencoding genes. Because... 
T lymphocytes | MicroRNA | Messenger RNA | RNA | Epithelial cells | B lymphocytes | Homologous transplantation | Biopsies | Gene expression regulation | Graft rejection | Biomarkers | Renal transplantation | Acute rejection | MRNA | MiRNA | biomarkers | renal transplantation | MULTIDISCIPLINARY SCIENCES | mRNA | TUMOR SUPPRESSORS | TRANSPLANTATION | IMMUNE-SYSTEM | acute rejection | MESSENGER-RNA | REJECTION | URINE | miRNA | C-ELEGANS | DIFFERENTIATION | CELL | GRANZYME-B | Blood Cells | MicroRNAs - analysis | Artificial Intelligence | Humans | Gene Expression Profiling | Graft Rejection - diagnosis | Leukocytes, Mononuclear | Kidney Transplantation - immunology | Transplantation, Homologous | Kidneys | Physiological aspects | Genetic aspects | Transplantation | Research | Gene expression | Health aspects | Risk factors | Proteins | Ribonucleic acid--RNA | Biopsy | Genes | Index Medicus | Biological Sciences
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