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1. Full Text A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
by Tollervey, David and Granneman, Sander and Petfalski, Elisabeth
The EMBO journal, ISSN 0261-4189, 10/2011, Volume 30, Issue 19, pp. 4006 - 4019
ribosome synthesis | RNP structure | CRAC | yeast | rRNA processing | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Gene Expression Regulation, Fungal | Multigene Family | DNA, Ribosomal Spacer | Ribosomal Proteins - genetics | Saccharomyces cerevisiae - genetics | RNA, Ribosomal, 5.8S - genetics | Ribosomes - metabolism | Crystallography, X-Ray | RNA Precursors - genetics | Saccharomyces cerevisiae Proteins - genetics | Carrier Proteins - genetics | Models, Biological | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Exonucleases - metabolism | Nucleic Acid Conformation | Binding Sites | Exoribonucleases - metabolism | Yeast | RNA-protein interactions | Molecular biology | Protein synthesis | Protein folding | Binding sites | Index Medicus
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2. Full Text 5′-to-3′ Exoribonuclease Activity in Bacteria: Role of RNase J1 in rRNA Maturation and 5′ Stability of mRNA
by Mathy, Nathalie and Bénard, Lionel and Pellegrini, Olivier and Daou, Roula and Wen, Tingyi and Condon, Ciarán
Cell (Cambridge), ISSN 0092-8674, 2007, Volume 129, Issue 4, pp. 681 - 692
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Endotoxins - metabolism | Exoribonucleases - genetics | Endotoxins - genetics | Hemolysin Proteins - genetics | RNA, Messenger - genetics | Bacterial Proteins - genetics | Bacillus subtilis - enzymology | RNA Stability - genetics | RNA, Ribosomal - genetics | Protein Subunits - metabolism | Bacillus subtilis - genetics | RNA, Messenger - biosynthesis | Bacterial Toxins - metabolism | Gene Expression Regulation, Bacterial - genetics | Bacterial Proteins - metabolism | Bacterial Toxins - genetics | RNA, Ribosomal - biosynthesis | Exoribonucleases - metabolism | Hemolysin Proteins - metabolism | Protein Subunits - genetics | Messenger RNA | Index Medicus | Life Sciences | Biochemistry, Molecular Biology
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3. Full Text Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
by Langille, Morgan G I and Zaneveld, Jesse and Caporaso, J Gregory and McDonald, Daniel and Knights, Dan and Reyes, Joshua A and Clemente, Jose C and Burkepile, Deron E and Vega Thurber, Rebecca L and Knight, Rob and Beiko, Robert G and Huttenhower, Curtis
Nature biotechnology, ISSN 1087-0156, 09/2013, Volume 31, Issue 9, pp. 814 - 821
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genes, Bacterial - physiology | Genes, Bacterial - genetics | Microbiota - genetics | Genetic Markers - genetics | Humans | Metagenomics - methods | Bacteria - classification | RNA, Ribosomal, 16S - genetics | High-Throughput Nucleotide Sequencing | Phylogeny | Bacteria - genetics | Sequence Analysis, DNA - methods | Usage | RNA | Analysis | Genetic aspects | Biological markers | Racial profiling | Phylogenetics | Microorganisms | Genetic markers | Microbiology | Ribonucleic acid--RNA | Index Medicus
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4. Full Text Germline NPM1 mutations lead to altered rRNA 2 '-O-methylation and cause dyskeratosis congenita
by Nachmani, Daphna and Bothmer, Anne H and Grisendi, Silvia and Mele, Aldo and Bothmer, Dietmar and Lee, Jonathan D and Monteleone, Emanuele and Cheng, Ke and Zhang, Yang and Bester, Assaf C and Guzzetti, Alison and Mitchell, Caitlin A and Mendez, Lourdes M and Pozdnyakova, Olga and Sportoletti, Paolo and Martelli, Maria-Paola and Vulliamy, Tom J and Safra, Modi and Schwartz, Schraga and Luzzatto, Lucio and Bluteau, Olivier and Soulier, Jean and Darnell, Robert B and Falini, Brunangelo and Dokal, Inderjeet and Ito, Keisuke and Clohessy, John G and Pandolfi, Pier Paolo
Nature genetics, ISSN 1061-4036, 10/2019, Volume 51, Issue 10, pp. 1518 - 1529
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | RNA Processing, Post-Transcriptional | Mice, Inbred C57BL | RNA, Messenger - genetics | Transcriptome | Male | Gene Expression Profiling | Dyskeratosis Congenita - genetics | Nuclear Proteins - chemistry | RNA, Ribosomal - genetics | Mice, Knockout | Animals | Epigenomics - methods | RNA, Small Nucleolar | Dyskeratosis Congenita - pathology | Germ-Line Mutation | Mice | Methylation | Nuclear Proteins - genetics | Hematopoietic Stem Cells | Care and treatment | Epithelial cells | Abnormalities | Genetic engineering | Genetic aspects | Research | Gene expression | Disease | Pathogenesis | Leukemia | Stem cell transplantation | Genomes | Inactivation | Hematopoietic stem cells | Nucleoli | Etiology | Bone marrow | Localization | Bioinformatics | Binding | Dyskeratosis | CRISPR | Translation | Deactivation | Hematology | RNA-protein interactions | rRNA | Ribonucleic acid--RNA | Cell differentiation | snoRNA | Hemopoiesis | Stem cells | Mutation | Binding sites | Index Medicus
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5. Full Text RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti
by Madhugiri, Ramakanth and Evguenieva-Hackenberg, Elena
FEBS letters, ISSN 0014-5793, 2009, Volume 583, Issue 14, pp. 2339 - 2342
16S rRNA | 23S rRNA | Ribonuclease | RNase J | 5′-End | Small RNA | ribosomal RNA operon | rRNA | nt | nucleotide | rrn | rDNA | ribosomal RNA | rRNA gene | RNase | ribonuclease | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | RNA, Ribosomal, 16S - metabolism | Sinorhizobium meliloti - genetics | Endoribonucleases - genetics | Ribonucleases - genetics | Endoribonucleases - metabolism | Isoenzymes - genetics | RNA, Ribosomal, 5S - chemistry | Molecular Sequence Data | Genetic Complementation Test | RNA, Ribosomal, 5S - genetics | Ribonucleases - metabolism | RNA, Ribosomal, 23S - chemistry | RNA, Ribosomal, 5S - metabolism | RNA, Ribosomal, 23S - genetics | RNA, Ribosomal, 16S - chemistry | Isoenzymes - metabolism | Base Sequence | RNA, Ribosomal, 16S - genetics | Nucleic Acid Conformation | RNA, Ribosomal, 23S - metabolism | Esterases | Recombinant DNA | Soil inoculation | Ribosomal RNA | Index Medicus
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6. Full Text Tax4Fun: Predicting functional profiles from metagenomic 16S rRNA data
by Aßhauer, Kathrin P and Wemheuer, Bernd and Daniel, Rolf and Meinicke, Peter
Bioinformatics, ISSN 1367-4803, 02/2015, Volume 31, Issue 17, pp. 2882 - 2884
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Computational Biology - methods | Genes, Bacterial - genetics | Metagenomics - methods | Genetic Markers | Phylogeny | Bacteria - genetics | Sequence Analysis, RNA - methods | Bacteria - classification | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Software | Databases, Nucleic Acid | Metagenome | Databases, Factual | Index Medicus | Microorganisms | Communities | Genes | Markers | Shotguns | Sequencing | Bioinformatics | Gene sequencing | Applications Notes
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7. Full Text rRNA Pseudouridylation Defects Affect Ribosomal Ligand Binding and Translational Fidelity from Yeast to Human Cells
by Jack, Karen and Bellodi, Cristian and Landry, Dori M and Niederer, Rachel O and Meskauskas, Arturas and Musalgaonkar, Sharmishtha and Kopmar, Noam and Krasnykh, Olya and Dean, Alison M and Thompson, Sunnie R and Ruggero, Davide and Dinman, Jonathan D
Molecular cell, ISSN 1097-2765, 11/2011, Volume 44, Issue 4, pp. 660 - 666
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Protein Biosynthesis | Hydro-Lyases - deficiency | Microcephaly - genetics | Microtubule-Associated Proteins - genetics | Saccharomyces cerevisiae - genetics | Humans | Ribonucleoproteins, Small Nuclear - genetics | Ribosomes - metabolism | Fetal Growth Retardation - genetics | Microcephaly - enzymology | Dyskeratosis Congenita - genetics | RNA, Ribosomal - genetics | Intellectual Disability - genetics | Nuclear Proteins - deficiency | Cell Cycle Proteins - genetics | Intellectual Disability - enzymology | RNA, Transfer - genetics | Hydro-Lyases - metabolism | Hydro-Lyases - genetics | Microtubule-Associated Proteins - deficiency | Nuclear Proteins - genetics | RNA, Transfer - chemistry | Binding Sites | Fetal Growth Retardation - enzymology | Genes, Reporter | Transduction, Genetic | Luciferases - analysis | RNA, Transfer - metabolism | RNA, Ribosomal - chemistry | Ribosomes - chemistry | RNA, Ribosomal - metabolism | Ribonucleoproteins, Small Nuclear - deficiency | Cell Cycle Proteins - deficiency | Saccharomyces cerevisiae Proteins - genetics | Dyskeratosis Congenita - enzymology | Sequence Homology, Amino Acid | Animals | Plasmids | Saccharomyces cerevisiae - enzymology | Mice | Mutation | Cricket | Chemical properties | Paralysis | Molecular genetics | Cells | Transfer RNA | Index Medicus | Dyskeratosis | Fidelity | RNA modification | Internal ribosome entry site | Translation | tRNA | rRNA | Ribosomes | X chromosome | pseudouridylation | Evolution
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8. Full Text Detection of the new cosmopolitan genus Thermoleptolyngbya (Cyanobacteria, Leptolyngbyaceae) using the 16S rRNA gene and 16S–23S ITS region
by Sciuto, Katia and Moro, Isabella
Molecular phylogenetics and evolution, ISSN 1055-7903, 12/2016, Volume 105, pp. 15 - 35
Thermoleptolyngbya | 16S rRNA | Secondary structures | Cryptic taxa | 16S–23S ITS | Thermal environments | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Cyanobacteria - genetics | Geography | Cyanobacteria - classification | Cyanobacteria - ultrastructure | Phylogeny | RNA, Ribosomal, 23S - chemistry | RNA, Ribosomal, 23S - genetics | RNA, Ribosomal, 16S - chemistry | DNA, Ribosomal Spacer - genetics | Base Sequence | Ecosystem | RNA, Bacterial - chemistry | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Nucleic Acid Conformation | RNA | Genetic research | Monte Carlo method | Hot springs | Genes | Cyanobacteria | Index Medicus
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