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Nucleic acids research, ISSN 0305-1048, 05/2019, Volume 47, Issue W1, pp. W65 - W73
We previously developed a web server CPGAVAS for annotation, visualization and GenBank submission of plastome sequences. Here, we upgrade the server into... 
READ ALIGNMENT | RNA | GENOMES | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | POLYMORPHISM | REPEATS | PROGRAM | Web Server Issue
Journal Article
DNA RESEARCH, ISSN 1340-2838, 08/2014, Volume 21, Issue 4, pp. 341 - 353
Automatic sequence annotation is an essential component of modern 'omics' studies, which aim to extract information fromlarge collections of sequence data.... 
RESOURCES | genome annotation | transcriptome annotation | PATTERNS | bioinformatic tool | functional annotation | PREDICTION | GENOMICS | GENE | DATABASE | GENETICS & HEREDITY | PROTEIN FUNCTION | EXPRESSION | TOOL
Journal Article
DNA Research, ISSN 1340-2838, 2014, Volume 21, Issue 4, pp. 341 - 353
Automatic sequence annotation is an essential component of modern 'omics' studies, which aim to extract information from large collections of sequence data.... 
Functional annotation | Transcriptome annotation | Genome annotation | Bioinformatic tool | Databases, Genetic | Software | Molecular Sequence Annotation | Computational Biology | Index Medicus | transcriptome annotation | Full Papers | genome annotation | bioinformatic tool | functional annotation
Journal Article
Genomics, ISSN 0888-7543, 2019
Next generation sequencing techniques produce enormous data but its analysis and visualization remains a big challenge. To address this, we have developed... 
Visualization | Genome analysis | Genome browser | Docker | EMBOSS
Journal Article
BMC bioinformatics, 08/2019, Volume 20, Issue 1, pp. 414 - 414
BACKGROUNDR-loops are three-stranded nucleic acid structures that usually form during transcription and that may lead to gene regulation or genome instability.... 
Index Medicus | Non-canonical DNA structures | Genome annotation | Next-generation sequencing | R-loop
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 08/2016, Volume 1415, pp. 477 - 506
As biomolecular sequencing is becoming the main technique in life sciences, functional interpretation of sequences in terms of biomolecular mechanisms with in... 
Non-globular segment | Genome annotation | Globular domain | ANNOTATOR | Protein function prediction | Protein sequence analysis | Sequence Homology, Amino Acid | Amino Acid Sequence | Computational Biology - methods | Proteins - metabolism | Databases, Protein | Protein Conformation | Proteins - chemistry | Web Browser | Index Medicus
Journal Article
Bioinformatics, ISSN 1367-4803, 7/2009, Volume 25, Issue 14, pp. 1843 - 1845
We proposed a tool named MetaTISA with an aim to improve TIS prediction of current gene-finders for metagenomes. The method employs a two-step strategy to... 
FRAGMENTS | SEQUENCES | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PROKARYOTIC GENOMES | DNA | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CLASSIFICATION | MICROBIAL GENOMES | ACCURACY | Peptide Chain Initiation, Translational | Software | Phylogeny | Genomics - methods | Sequence Analysis, DNA - methods | Genes | Index Medicus
Journal Article
Microbiology, ISSN 1350-0872, 2001, Volume 147, Issue 1, pp. 2 - 2
Journal Article
Politics & Government Week, ISSN 1944-2696, 01/2014, p. 6615
  According to news reporting originating from Washington, D.C., by VerticalNews journalists, a patent application by the inventors Bowman, Stephen D. (Monroe,... 
Cloud computing | Genomics | Genomes | Information management | Human Genome Project | Deoxyribonucleic acid--DNA
Newspaper Article
Politics & Government Week, ISSN 1944-2696, 01/2014, p. 10182
  News editors obtained the following quote from the background information supplied by the inventors: "The Human Genome Project may be described as an... 
Cloud computing | Genomics | Genomes | Information management | Human Genome Project | Deoxyribonucleic acid--DNA
Newspaper Article
Journal Article
Genetic Epidemiology, ISSN 0741-0395, 06/2019, Volume 43, Issue 4, pp. 356 - 364
When interpreting genome‐wide association peaks, it is common to annotate each peak by searching for genes with plausible relationships to the trait. However,... 
genome‐wide association studies | association peaks | literature review | false positives | genome-wide association studies | GENETICS & HEREDITY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SUSCEPTIBILITY LOCI | GENOME-WIDE ASSOCIATION | Genomics | Genomes | Epidemiology | Genes
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 05/2007, Volume 8, Issue 1, pp. 170 - 170
Journal Article
BMC Research Notes, ISSN 1756-0500, 01/2016, Volume 9, Issue 1, pp. 39 - 39
Journal Article
Bioinformatics, ISSN 1367-4803, 12/2008, Volume 24, Issue 23, pp. 2672 - 2676
Motivation: Artemis and Artemis Comparison Tool (ACT) have become mainstream tools for viewing and annotating sequence data, particularly for microbial... 
STATISTICS & PROBABILITY | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | TOOL | Databases, Genetic | Software | Databases, Nucleic Acid | Genomics | Index Medicus | Original Papers
Journal Article
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