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hi-c (403) 403
science & technology (345) 345
life sciences & biomedicine (316) 316
chromatin (187) 187
genomes (173) 173
chromosomes (153) 153
genomics (147) 147
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deoxyribonucleic acid--dna (70) 70
analysis (68) 68
chromatin - genetics (66) 66
chromosome conformation capture (52) 52
conformation (51) 51
life sciences (46) 46
chromatin - metabolism (45) 45
epigenetics (44) 44
science & technology - other topics (44) 44
multidisciplinary sciences (43) 43
gene regulation (42) 42
transcription (42) 42
chromatin - chemistry (40) 40
life sciences & biomedicine - other topics (40) 40
methods (39) 39
biochemical research methods (38) 38
genetic aspects (37) 37
genetic research (36) 36
genomics - methods (35) 35
proteins (34) 34
software (34) 34
3d genome (33) 33
algorithms (31) 31
genome assembly (31) 31
chromosome (30) 30
ctcf (30) 30
mice (30) 30
gene mapping (29) 29
genetic transcription (29) 29
stem cells (28) 28
physiological aspects (27) 27
computer simulation (26) 26
binding sites (25) 25
chromosom (25) 25
dna sequencing (25) 25
genom (25) 25
hi‐c (25) 25
topologically associating domains (25) 25
assembly (24) 24
biotechnology (24) 24
cancer (24) 24
gene sequencing (24) 24
research article (24) 24
cell line (23) 23
genome, human (23) 23
hi-c data (23) 23
mathematical & computational biology (23) 23
nucleic acid conformation (23) 23
usage (23) 23
chromosomes - genetics (22) 22
epigenetic inheritance (22) 22
dna methylation (21) 21
data note (20) 20
chia-pet (19) 19
chromosome mapping (19) 19
chromosome mapping - methods (19) 19
domains (19) 19
enhancers (19) 19
nucleotide sequencing (19) 19
promoter regions, genetic (19) 19
tad (19) 19
capture hi-c (18) 18
cohesin (18) 18
female (18) 18
phylogeny (18) 18
physical sciences (18) 18
review (18) 18
tads (18) 18
anopheles (17) 17
biological sciences (17) 17
cell cycle (17) 17
computer applications (17) 17
computer science (17) 17
high-throughput nucleotide sequencing (17) 17
regulatory sequences (17) 17
chromatin structure (16) 16
computational biology - methods (16) 16
datasets (16) 16
enhancer elements, genetic (16) 16
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1. Full Text Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells
by Ramani, Vijay and Deng, Xinxian and Qiu, Ruolan and Lee, Choli and Disteche, Christine M and Noble, William S and Shendure, Jay and Duan, Zhijun
Methods (San Diego, Calif.), ISSN 1046-2023, 01/2020, Volume 170, pp. 61 - 68
Chromatin | Single-cell Hi-C | Three-dimensional (3D) genome architecture | Hi-C | Single cell | Sci-Hi-C | Chromosome | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Cell Line | Chromatin - metabolism | Gene Library | Humans | Cell Separation - methods | Chromatin - isolation & purification | Animals | Cell Nucleus - genetics | Single-Cell Analysis - methods | Chromosome Mapping - methods | Computer Simulation | Mice | High-Throughput Nucleotide Sequencing - methods | Nucleic Acid Conformation | Chromatin - genetics | Index Medicus | sci-Hi-C
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2. Full Text A Scalable Computational Approach for Simulating Complexes of Multiple Chromosomes
by Oliveira Junior, Antonio B and Contessoto, Vinícius G and Mello, Matheus F and Onuchic, José N
Journal of molecular biology, ISSN 0022-2836, 2020, pp. 166700 - 166700
OpenMM | Hi-C | genome architecture | chromosome simulations | Index Medicus
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3. Full Text Comparison of computational methods for the identification of topologically associating domains
by Zufferey, Marie and Tavernari, Daniele and Oricchio, Elisa and Ciriello, Giovanni
Genome Biology, ISSN 1474-7596, 12/2018, Volume 19, Issue 1, pp. 217 - 217
Method comparison | Hi-C | Topologically associating domain | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Chromatin Assembly and Disassembly | Mice | Animals | Genomics - methods | Chromosomes | Humans | Chromatin | Computer applications | Genomes | Identification | Bioinformatics | Experiments | Methods | Deoxyribonucleic acid--DNA | Index Medicus
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4. Full Text FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
by Kruse, Kai and Hug, Clemens B and Vaquerizas, Juan M
Genome biology, ISSN 1474-760X, 12/2020, Volume 21, Issue 1, pp. 303 - 303
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Datasets | Automation | Genomes | Cell cycle | Conformation | Index Medicus | Chromosome conformation capture | Chromosomal compartments | Chromatin loops | Hi-C | Hi-C analysis | Topologically associating domains (TAD)
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5. Full Text FreeHi-C spike-in simulations for benchmarking differential chromatin interaction detection
by Zheng, Ye and Zhou, Peigen and Keleş, Sündüz
Methods (San Diego, Calif.), ISSN 1046-2023, 07/2020
Index Medicus
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6. Full Text Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map
by Kunz, Timothy and Rieber, Lila and Mahony, Shaun
Methods (San Diego, Calif.), ISSN 1046-2023, 07/2020
Index Medicus
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7. Full Text Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle
by Lazar‐Stefanita, Luciana and Scolari, Vittore F and Mercy, Guillaume and Muller, Héloise and Guérin, Thomas M and Thierry, Agnès and Mozziconacci, Julien and Koszul, Romain
The EMBO journal, ISSN 0261-4189, 09/2017, Volume 36, Issue 18, pp. 2684 - 2697
SMC | Hi‐C | chromosome segregation | replication profile | loop extrusion | Hi-C | DNA-Binding Proteins - metabolism | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | Saccharomyces cerevisiae - physiology | Cell Cycle | Chromosomal Proteins, Non-Histone - metabolism | Chromosomes, Fungal - metabolism | Cell Cycle Proteins - metabolism | Adenosine Triphosphatases - metabolism | Spatio-Temporal Analysis | Index Medicus | Life Sciences | Genetics | Chromatin, Epigenetics, Genomics & Functional Genomics | DNA Replication, Repair & Recombination
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8. Full Text Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
by Uusküla-Reimand, Liis and Hou, Huayun and Samavarchi-Tehrani, Payman and Rudan, Matteo Vietri and Liang, Minggao and Medina-Rivera, Alejandra and Mohammed, Hisham and Schmidt, Dominic and Schwalie, Petra and Young, Edwin J and Reimand, Jüri and Hadjur, Suzana and Gingras, Anne-Claude and Wilson, Michael D
Genome Biology, ISSN 1474-7596, 08/2016, Volume 17, Issue 1, pp. 182 - 182
BioID | DNA supercoiling | Genome organization | Hi-C | Proteomics | Topological associated domains | ChIP-seq | Comparative genomics | Topoisomerase II beta | Cohesin | CTCF | ChIP-exo | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Humans | DNA-Binding Proteins - metabolism | Poly-ADP-Ribose Binding Proteins | Chromatin Immunoprecipitation | Cell Cycle Proteins - genetics | Transcription, Genetic | Binding Sites | Chromosomes | Repressor Proteins - metabolism | DNA, Ribosomal - genetics | DNA Topoisomerases, Type II - metabolism | Promoter Regions, Genetic | Chromosomal Proteins, Non-Histone - metabolism | Cell Cycle Proteins - metabolism | Repressor Proteins - genetics | DNA-Binding Proteins - genetics | Chromosomal Proteins, Non-Histone - genetics | Animals | Protein Interaction Maps - genetics | CCCTC-Binding Factor | Alleles | Protein Binding | DNA Topoisomerases, Type II - genetics | Mice | Genome | Chromatin - genetics | Deoxyribonuclease | DNA topoisomerase (ATP-hydrolysing) | Enzymes | Chromatin | Immunoprecipitation | Genomics | Genomes | Breast cancer | Regulatory sequences | Gene expression | Proteins | Nucleoli | Developmental stages | DNA methylation | Scientific imaging | Gene mapping | Protein interaction | Mass spectrometry | Bioinformatics | Deoxyribonucleic acid--DNA | Index Medicus
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9. Full Text Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
by Harewood, Louise and Kishore, Kamal and Eldridge, Matthew D and Wingett, Steven and Pearson, Danita and Schoenfelder, Stefan and Collins, V.Peter and Fraser, Peter
Genome Biology, ISSN 1474-7596, 06/2017, Volume 18, Issue 1, pp. 125 - 125
Copy number variation | Hi-C | Glioblastoma | Chromosome conformation capture | Chromosome rearrangement | Tumour | Anaplastic astrocytoma | Cancer | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Translocation, Genetic | Neoplasms - genetics | Chromosome Breakpoints | Humans | Chromosome Aberrations | In Situ Hybridization, Fluorescence | DNA Copy Number Variations - genetics | Chromosome Inversion - genetics | Breakpoints | Chromosome translocations | Copy number | Genomes | Genetic engineering | Gene expression | Chromosome rearrangements | Chromosomes | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
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10. Full Text Transcription rate and transcript length drive formation of chromosomal interaction domain boundaries
by Le, Tung BK and Laub, Michael T
The EMBO journal, ISSN 0261-4189, 07/2016, Volume 35, Issue 14, pp. 1582 - 1595
Hi‐C | chromosomal domains | chromosome organization | transcription | supercoil diffusion | Hi-C | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Chromosomes, Bacterial - metabolism | Caulobacter crescentus - metabolism | Caulobacter crescentus - genetics | Transcription, Genetic | High-Throughput Nucleotide Sequencing | Nucleic Acid Conformation | Microscopy, Fluorescence | Transcription factors | Gene loci | Gene expression | Chromosomes | Index Medicus | Chromatin, Epigenetics, Genomics & Functional Genomics | Microbiology, Virology & Host Pathogen Interaction | DNA Replication, Repair & Recombination
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11. Hi-C revolution: From a snapshot of DNA–DNA interaction in a single cell to chromosome-scale de novo genome assembly
by Hoshino, Arata and Matsunaga, Tomoko M and Sakamoto, Takuya and Matsunaga, Sachihiro
Cytologia, ISSN 0011-4545, 06/2017, Volume 82, Issue 3, pp. 223 - 226
Hi-C | Topologically associating domain | Compartment | Capture Hi-C | Chromosome conformation capture | Single nucleus Hi-C | Single cell Hi-C | Genetics & Heredity | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Chromatin | High resolution | Data acquisition | Genomes | Chromosome rearrangements | Nuclei | Chromosome translocations | Scaffolding | Nuclei (cytology) | Chromosomes | Assembly | Deoxyribonucleic acid--DNA | Conformation | Cancer
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12. Full Text Changes in Vibrio natriegens Growth Under Simulated Microgravity
by Yin, Man and Ye, Bingyu and Jin, Yifei and Liu, Lin and Zhang, Yan and Li, Ping and Wang, Yahao and Li, Ye and Han, Yanping and Shen, Wenlong and Zhao, Zhihu
Frontiers in microbiology, ISSN 1664-302X, 08/2020, Volume 11, pp. 2040 - 2040
SNPs | Hi-C | simulated microgravity | transcriptome | chromosome conformation
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13. Full Text Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
by Javierre, Biola M and Burren, Oliver S and Wilder, Steven P and Kreuzhuber, Roman and Hill, Steven M and Sewitz, Sven and Cairns, Jonathan and Wingett, Steven W and Várnai, Csilla and Thiecke, Michiel J and Burden, Frances and Farrow, Samantha and Cutler, Antony J and Rehnström, Karola and Downes, Kate and Grassi, Luigi and Kostadima, Myrto and Freire-Pritchett, Paula and Wang, Fan and Martens, Joost H and Kim, Bowon and Sharifi, Nilofar and Janssen-Megens, Eva M and Yaspo, Marie-Laure and Linser, Matthias and Kovacsovics, Alexander and Clarke, Laura and Richardson, David and Datta, Avik and Flicek, Paul and Stunnenberg, Hendrik G and Todd, John A and Zerbino, Daniel R and Stegle, Oliver and Ouwehand, Willem H and Frontini, Mattia and Wallace, Chris and Spivakov, Mikhail and Fraser, Peter and The BLUEPRINT Consortium and BLUEPRINT Consortium
Cell (Cambridge), ISSN 0092-8674, 11/2016, Volume 167, Issue 5, pp. 1369 - 1384.e19
promoter capture Hi-C | non-coding genetic variation | disease gene prioritization | gene regulation | chromosome conformation | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Promoter Regions, Genetic | Chromatin | Genetic Predisposition to Disease | Genome-Wide Association Study | Epigenomics | Disease - genetics | Cell Separation | Humans | Cell Lineage | Blood Cells - cytology | Enhancer Elements, Genetic | Hematopoiesis | Polymorphism, Single Nucleotide | Quantitative Trait Loci | Genes | Genomics | Genetic aspects | Medical research | Medical genetics | Medicine, Experimental | Index Medicus | Resource
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