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Journal of Chemical Physics, ISSN 0021-9606, 10/2005, Volume 123, Issue 14, pp. 144104 - 144104-5
We present a method to analyze biased molecular-dynamics and Monte Carlo simulations, also known as umbrella sampling. In the limiting case of a strong bias,... 
FREE-ENERGY CALCULATIONS | CONSTRAINED MOLECULAR-DYNAMICS | FLUID | MEAN FORCE | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | HYDROXYBENZOATE HYDROXYLASE | ERROR | SIMULATIONS | HISTOGRAM ANALYSIS METHOD
Journal Article
AIAA Journal, ISSN 0001-1452, 11/2006, Volume 44, Issue 11, pp. 2682 - 2690
Structural analysis and design optimization have recently been extended to the stochastic approach to consider various uncertainties. However, in areas where... 
UNCERTAINTY | HISTOGRAMS | PROBABILITY | ENGINEERING, AEROSPACE | FUZZY-SETS | OPTIMUM DESIGN | Mathematical optimization | Analysis | Stochastic processes | Structural analysis (Engineering) | Fuzzy sets | Design optimization
Journal Article
Aerosol Science and Technology, ISSN 0278-6826, 04/2016, Volume 50, Issue 4, pp. 353 - 362
Man-made vitreous fibers (MMVFs) are noncrystalline substances made of glass, rock or slag and are widely used as thermal or acoustic insulation materials.... 
Tiina Reponen | MAGISCAN | ENGINEERING, CHEMICAL | ENVIRONMENTAL SCIENCES | MADE VITREOUS FIBERS | HTM METHOD | ASBESTOS FIBERS | MICROSCOPY | METEOROLOGY & ATMOSPHERIC SCIENCES | ENGINEERING, MECHANICAL | Aerosols | Scientific imaging | Image analysis | Rock | Manuals | Software | Counting | Fibers | Computer programs
Journal Article
Journal of Physical Chemistry B, ISSN 1520-6106, 11/2013, Volume 117, Issue 47, pp. 14785 - 14796
A potential of mean force (PMF) that provides the free energy of a thermally driven system along some chosen reaction coordinate (RC) is a useful descriptor of... 
FREE-ENERGY CALCULATIONS | REPLICA EXCHANGE METHOD | THERMODYNAMIC INTEGRATION | STATISTICAL-MECHANICS | MOLECULAR-DYNAMICS | MONTE-CARLO DATA | CHEMISTRY, PHYSICAL | CONVERGENCE | ERROR | SIMULATIONS | UMBRELLA INTEGRATION | Potential energy | Analysis | Histograms | Constraints | Mathematical models | Sampling | Density | Spatial resolution | Variance
Journal Article
Molecular Simulation, ISSN 0892-7022, 09/2016, Volume 42, Issue 13, pp. 1079 - 1089
The weighted histogram analysis method (WHAM) for free energy calculations is a valuable tool to produce free energy differences with the minimal errors. Given... 
MBAR | WHAM | Free energy | DIIS | MOLECULAR-DYNAMICS | MONTE-CARLO DATA | PHASE-TRANSITIONS | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | MODEL | SIMULATION | GROMACS | CONVERGENCE ACCELERATION | FREE-ENERGY CALCULATIONS | EM ALGORITHM | BIOLOGICAL MOLECULES | Histograms | Computer simulation | Computation | Inversions | Mathematical models | Subspaces | Iterative methods | free energy
Journal Article
International Agricultural Engineering Journal, ISSN 0858-2114, 01/2018, Volume 27, Issue 3, p. 44
Maize is one of the most cultivated grain crops in the world, and the way to effectively improve maize yield has become an important issue. Root system is one... 
Transformation | Grain crops | Segmentation | Image processing | Roots | Grain cultivation | Scoring | Maize | Histograms | Agricultural production | Measurement methods | Nutrients | Opacity | Crop yield | Quantitative analysis | Cultivation | Organs | Corn | Equalization | Seedlings | Image quality | Image segmentation | Machine vision | Linear transformations | Image enhancement | Methods
Journal Article
Review of Scientific Instruments, ISSN 0034-6748, 01/2016, Volume 87, Issue 1, p. 13301
Journal Article
INTERNATIONAL AGROPHYSICS, ISSN 0236-8722, 04/2016, Volume 30, Issue 2, pp. 219 - 229
A new image analysis method for the spatial characterization of microscopy images of fruit microstructure is proposed in order to analyse the heterogeneous... 
AGRONOMY | microstructure | bivariate histograms | MODEL | image analysis | osmotic | BY-PRODUCTS | ultrasound | apple | RECOVERY | RATES | TRANSPORT | FRUIT | GAS-EXCHANGE
Journal Article
International Agrophysics, ISSN 0236-8722, 04/2016, Volume 30, Issue 2, pp. 219 - 229
A new image analysis method for the spatial characterization of microscopy images of fruit microstructure is proposed in order to analyse the heterogeneous... 
apple | microstructure | bivariate histograms | image analysis | osmotic | ultrasound
Journal Article
by Qiu, JJ and Wu, Y and Hui, B and Chen, J and Ji, L and Wang, M
JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS, ISSN 2156-7018, 12/2018, Volume 8, Issue 9, pp. 1835 - 1843
Journal Article
Journal of Chemical Physics, ISSN 0021-9606, 09/2008, Volume 129, Issue 12, pp. 124105 - 124105-10
Journal Article
The Journal of Chemical Physics, ISSN 0021-9606, 08/2016, Volume 145, Issue 8, pp. 084115 - 084115
Umbrella sampling efficiently yields equilibrium averages that depend on exploring rare states of a model by biasing simulations to windows of coordinate... 
FREE-ENERGY CALCULATIONS | EMPIRICAL DISTRIBUTIONS | MARKOV-CHAINS | MODELS | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | SIMULATION | HISTOGRAM ANALYSIS METHOD | Theorems | Alanine | Error analysis | Computer simulation | Eigenvectors | Sampling | Free energy | Index Medicus | ARTICLES
Journal Article
Journal of Chemical Physics, ISSN 0021-9606, 2008, Volume 128, Issue 14, pp. 144120 - 144120
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 03/2016, Volume 37, Issue 8, pp. 724 - 738
As an extension of the Outlier FLOODing (OFLOOD) method [Harada et al., J. Comput. Chem. 2015, 36, 763], the sparsity of the outliers defined by a hierarchical... 
biologically rare event | conformational sampling | conformational transition | molecular dynamics simulation | protein function | protein folding | enhanced conformational sampling method | TABOO SEARCH ALGORITHM | CHEMISTRY, MULTIDISCIPLINARY |