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COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, ISSN 0927-7757, 10/2019, Volume 578, p. 123620
Lipid domains have been obtained using Langmuir-Blodgett films (LBs) and giant unilamellar vesicles (GUVs). Three membranes compositions were chosen, the... 
PHASES | PROTEIN | SYNTHETIC PEPTIDES | CHEMISTRY, PHYSICAL | GUVs | Lipid-peptide interaction | ASSEMBLY INTERMEDIATE COMPLEXES | GBV-C peptides | LANGMUIR-BLODGETT-FILMS | MONOLAYERS | UNILAMELLAR VESICLES | MODEL MEMBRANES | Langmuir-Blodgett films | HIV-1 FP inhibition | IMMUNODEFICIENCY-VIRUS TYPE-1 | VIRAL ENTRY
Journal Article
Colloids and Surfaces A: Physicochemical and Engineering Aspects, ISSN 0927-7757, 10/2018, Volume 554, pp. 187 - 196
This study is an extension of our previous paper on the interaction of AcP6-2 and the VIR576 peptides with DPPC: DPPS (3:2) and DMPC: DMPS (3:2) model... 
Trp fluorescence quenching | AFM | HIV-1 FP inhibition | FRET | GBV-C peptides | PC: PS (3:2) membranes | FUSION | ENTRY | PROTEIN | VIRUS-C | CHEMISTRY, PHYSICAL | DIRECT VISUALIZATION | FLUORESCENCE | ENVELOPE | INFECTION | GLYCOPROTEIN | PHOSPHATIDYLSERINE | Fluorescence | Atomic force microscopy | Lipids | Peptides | HIV (Viruses) | Analysis
Journal Article
Colloids and Surfaces A: Physicochemical and Engineering Aspects, ISSN 0927-7757, 09/2015, Volume 480, pp. 184 - 190
Journal Article
Current Bioinformatics, ISSN 1574-8936, 10/2015, Volume 10, Issue 4, pp. 441 - 455
Journal Article
Biochemical Journal, ISSN 0264-6021, 07/2014, Volume 461, Issue 2, pp. 213 - 222
Lipid-conjugated peptides have advanced. the understanding of membrane protein functions and the roles of lipids in the membrane milieu. These lipopeptides... 
Membrane fusion | Membrane protein | Biophysics | HIV | Protein folding | HIV entry inhibitor | MEDIATED FUSION | VIRUS | CHOLESTEROL | BIOCHEMISTRY & MOLECULAR BIOLOGY | GP41 | ENVELOPE GLYCOPROTEIN | SPHINGOLIPIDS | DIHYDROSPHINGOMYELIN | membrane fusion | RAFTS | membrane protein | protein folding | INHIBITORS | biophysics | CELL | HIV Envelope Protein gp120 - genetics | Gene Expression | Luciferases - metabolism | HIV-1 - drug effects | tat Gene Products, Human Immunodeficiency Virus - genetics | Humans | HIV-1 - genetics | Virus Internalization - drug effects | Protein Folding | Luciferases - genetics | Peptides - pharmacology | Host-Pathogen Interactions | Sphingosine - pharmacology | Sphingosine - analogs & derivatives | HIV-1 - growth & development | Peptides - chemical synthesis | HeLa Cells | Transgenes | Genes, Reporter | Membrane Fusion - drug effects | Sphingosine - chemistry | CD4 Antigens - metabolism | Chol, cholesterol | SM, sphingomyelin | DCM, dichloromethane | XTT, 2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide | DIEA, N,N-di-isopropylethylamine | PA, palmitic acid | CHR, C-heptad repeat | DMF, dimethylformamide | NHR, N-heptad repeat | FP, fusion peptide | PC, phosphatidylcholine | Rho, rhodamine | NA, numerical aperture | NBD, 7-nitrobenz-2-oxa-1,3-diazole | PE, phosphatidylethanolamine | ENV, envelope glycoprotein gp160 | LUV, large unilamellar vesicle | DMEM, Dulbecco’s modified Eagle’s medium | RP-HPLC, reverse-phase HPLC | DHSM, dihydrosphingomyelin | SHB, six helix bundle | ER, endoplasmic reticulum | TFA, trifluoroacetic acid
Journal Article
European Journal of Medicinal Chemistry, ISSN 0223-5234, 05/2015, Volume 96, pp. 445 - 457
Computational methods can be applied in drug development for the identification of novel lead candidates, but also for the prediction of pharmacokinetic... 
Method comparison | Pharmacophore modeling | Shape-based modeling | Docking | Cyclooxygenase | 2D similarity-based search | CHEMISTRY, MEDICINAL | CONFORMER GENERATION | DRUG DISCOVERY | IDENTIFICATION | MOLECULAR DOCKING | GENETIC ALGORITHM | SYNTHASE | IN-VITRO | SHAPE | INHIBITORS | BINDING | Dose-Response Relationship, Drug | Humans | Cyclooxygenase 2 - metabolism | Models, Molecular | Cyclooxygenase Inhibitors - chemistry | Molecular Structure | Structure-Activity Relationship | Cyclooxygenase 1 - metabolism | Drug Evaluation, Preclinical | Cyclooxygenase Inhibitors - pharmacology | Case studies | Performance appraisals | COX-2 inhibitors | NI, negative ionizable feature | A, anion | MNA, multilevel neighborhoods of atoms | MB, metal binding feature | R, ring feature | DES, diethylstilbestrol | DUD, Directory of Useful Decoys | EE, early enrichment | Acc, accuracy | ACE, angiotensin-converting enzyme | C, cation | m. p., melting point | COX, cyclooxygenase | OECS, ROCS OpenEye ComboScore | FP, false positive hits | HBA, hydrogen bond acceptor | HBD, hydrogen bond donor | ROCS, Rapid Overlay of Chemical Structures | OE, overall enrichment | H, hydrophobic feature | TP, true positive hits | SERMs, selective estrogen receptor modulators | Tc, Tanimoto coefficient | FCFP6, Functional-class fingerprints 6 | GFA, genetic function approximation | ECFP4, Extended-connectivity fingerprints 4 | SEA, Similarity Ensemble Approach | KEGG, Kyoto Encyclopedia of Genes and Genomes | PGE2, Prostaglandin E2 | FN, false negative hits | HIV-1, human immunodeficiency virus 1 | AA, arachidonic acid | Ar, aromatic feature | TN, true negative hits | XVOL, exclusion volume | PDB, Protein Databank | Original | OEST, ROCS OpenEye shape Tanimoto | PASS, Prediction of Activity Spectra for Substances | WOMBAT, World of Molecular Bioactivity
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2013, Volume 110, Issue 17, pp. 6626 - 6633
Journal Article
by Liao, Hua-Xin and Lynch, Rebecca and Zhou, Tongqing and Gao, Feng and Munir Alam, S and Boyd, Scott D and Fire, Andrew Z and Roskin, Krishna M and Schramm, Chaim A and Zhang, Zhenhai and Zhu, Jiang and Shapiro, Lawrence and Mullikin, James C and Gnanakaran, S and Hraber, Peter and Wiehe, Kevin and Kelsoe, Garnett and Yang, Guang and Xia, Shi-Mao and Montefiori, David C and Parks, Robert and Lloyd, Krissey E and Scearce, Richard M and Soderberg, Kelly A and Cohen, Myron and Kamanga, Gift and Louder, Mark K and Tran, Lillian M and Chen, Yue and Cai, Fangping and Chen, Sheri and Moquin, Stephanie and Du, Xiulian and Gordon Joyce, M and Srivatsan, Sanjay and Zhang, Baoshan and Zheng, Anqi and Shaw, George M and Hahn, Beatrice H and Kepler, Thomas B and Korber, Bette T. M and Kwong, Peter D and Mascola, John R and Haynes, Barton F and Becker, Jesse and Benjamin, Betty and Blakesley, Robert and Bouffard, Gerry and Brooks, Shelise and Coleman, Holly and Dekhtyar, Mila and Gregory, Michael and Guan, Xiaobin and Gupta, Jyoti and Han, Joel and Hargrove, April and Ho, Shi-Ling and Johnson, Taccara and Legaspi, Richelle and Lovett, Sean and Maduro, Quino and Masiello, Cathy and Maskeri, Baishali and McDowell, Jenny and Montemayor, Casandra and Mulliki, James and Park, Morgan and Riebow, Nancy and Schandler, Karen and Schmidt, Brian and Sison, Christina and Stantripop, Mal and Thomas, James and Thomas, Pam and Vemulapalli, Meg and Young, Alice and NISC Comparative Sequencing Progra and NISC Comparative Sequencing Program
Nature, ISSN 0028-0836, 04/2013, Volume 496, Issue 7446, pp. 469 - 476
Current human immunodeficiency virus-1 (HIV-1) vaccines elicit strain-specific neutralizing antibodies. However, cross-reactive neutralizing antibodies arise... 
B-CELL RESPONSES | CONFORMATIONAL EPITOPE | POTENT NEUTRALIZATION | CD4 BINDING-SITE | VACCINE DESIGN | MULTIDISCIPLINARY SCIENCES | ENVELOPE GLYCOPROTEIN | HIV-1-INFECTED INDIVIDUALS | HUMAN MONOCLONAL-ANTIBODIES | SUBTYPE-B | IN-SITU PROTEOLYSIS | HIV Envelope Protein gp120 - genetics | Clone Cells - cytology | Humans | AIDS Vaccines - immunology | Molecular Sequence Data | Crystallography, X-Ray | Neutralization Tests | Phylogeny | HIV Envelope Protein gp120 - metabolism | Epitopes - immunology | HIV Envelope Protein gp120 - immunology | Antibodies, Neutralizing - immunology | HIV Antibodies - immunology | HIV-1 - chemistry | HIV Envelope Protein gp120 - chemistry | Antibodies, Monoclonal - chemistry | Antibodies, Monoclonal - immunology | Protein Structure, Tertiary | Amino Acid Sequence | CD4 Antigens - immunology | Africa | Cells, Cultured | Models, Molecular | Antibodies, Neutralizing - genetics | Cross Reactions - immunology | HIV Antibodies - chemistry | HIV-1 - classification | Antibodies, Monoclonal - genetics | Cell Lineage | HIV-1 - immunology | CD4 Antigens - chemistry | Antibodies, Neutralizing - chemistry | Epitopes - chemistry | HIV Antibodies - genetics | Mutation | Evolution, Molecular | Monoclonal antibodies | AIDS vaccines | Genetic aspects | Research | HIV (Viruses) | Properties | Proteins | Plasma | Infections | Patients | Binding sites | Crystal structure
Journal Article