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1. Full Text Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria
by Wenqin Wang and Gene-Wei Li and Chongyi Chen and X. Sunney Xie and Xiaowei Zhuang
Science, ISSN 0036-8075, 9/2011, Volume 333, Issue 6048, pp. 1445 - 1449
Bacterial chromosomes are confined in submicrometer-sized nucleoids. Chromosome organization is facilitated by nucleoid-associated proteins (NAPs), but the... 
Proteins | Molecules | DNA | Genes | Imaging | REPORTS | Cell lines | Genetic loci | Gene expression regulation | Genomes | Chromosomes | CELLS | STRUCTURING PROTEIN | CAULOBACTER-CRESCENTUS | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | GENE-EXPRESSION | OPTICAL RECONSTRUCTION MICROSCOPY | H-NS PROTEIN | BINDING | GENOME | Molecular Chaperones - metabolism | DNA, Bacterial - metabolism | Factor For Inversion Stimulation Protein - metabolism | Fimbriae Proteins - metabolism | Protein Multimerization | DNA, Bacterial - chemistry | Genetic Loci | Recombinant Fusion Proteins - metabolism | Escherichia coli K12 - ultrastructure | DNA-Binding Proteins - metabolism | Integration Host Factors - metabolism | Chromosomes, Bacterial - metabolism | Escherichia coli K12 - metabolism | Cell Division | Nucleic Acid Conformation | Binding Sites | Repressor Proteins - metabolism | Protein Structure, Tertiary | Genome, Bacterial | Repressor Proteins - chemistry | Operon | Repressor Proteins - genetics | Escherichia coli Proteins - metabolism | Chromosomes, Bacterial - ultrastructure | Fimbriae Proteins - genetics | Escherichia coli Proteins - genetics | Fimbriae Proteins - chemistry | Escherichia coli K12 - genetics | Escherichia coli Proteins - chemistry | Gene Expression Regulation, Bacterial | Cellular proteins | Research | Properties | Bacterial genetics | E coli | Microbiology | Bacterial proteins
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2. Full Text Phosphorylation of the adaptor ASC acts as a molecular switch that controls the formation of speck-like aggregates and inflammasome activity
by Hara, Hideki and Tsuchiya, Kohsuke and Kawamura, Ikuo and Fang, Rendong and Hernandez-Cuellar, Eduardo and Shen, Yanna and Mizuguchi, Junichiro and Schweighoffer, Edina and Tybulewicz, Victor and Mitsuyama, Masao
Nature Immunology, ISSN 1529-2908, 12/2013, Volume 14, Issue 12, pp. 1247 - 1255
The inflammasome adaptor ASC contributes to innate immunity through the activation of caspase-1. Here we found that signaling pathways dependent on the kinases... 
LISTERIA-MONOCYTOGENES | AIM2 INFLAMMASOME | PROTEIN | INNATE IMMUNE-RESPONSES | MACROPHAGES | KINASE | HOST-DEFENSE | NLRP3 INFLAMMASOME | IMMUNOLOGY | CASPASE-1 ACTIVATION | VIRAL-INFECTION | Interleukin-18 - immunology | Inflammasomes - metabolism | Cytoskeletal Proteins - genetics | NLR Family, Pyrin Domain-Containing 3 Protein | Protein-Tyrosine Kinases - metabolism | Dendritic Cells - immunology | Humans | JNK Mitogen-Activated Protein Kinases - immunology | Caspase 1 - metabolism | Immunoblotting | Intracellular Signaling Peptides and Proteins - metabolism | RNA Interference | Bone Marrow Cells - immunology | Phosphorylation - immunology | JNK Mitogen-Activated Protein Kinases - genetics | Intracellular Signaling Peptides and Proteins - genetics | Syk Kinase | Carrier Proteins - immunology | DNA-Binding Proteins | Tyrosine - immunology | Mice, Knockout | Macrophages - metabolism | Tyrosine - metabolism | Lipopolysaccharides - pharmacology | Mice | Interleukin-18 - metabolism | Intracellular Signaling Peptides and Proteins - immunology | JNK Mitogen-Activated Protein Kinases - metabolism | Caspase 1 - immunology | Protein-Tyrosine Kinases - immunology | Protein-Tyrosine Kinases - genetics | HEK293 Cells | Cytoskeletal Proteins - metabolism | Female | Nuclear Proteins - genetics | Dendritic Cells - metabolism | Macrophages - immunology | Mice, Inbred C57BL | Cells, Cultured | Nuclear Proteins - metabolism | Nuclear Proteins - immunology | Inflammasomes - genetics | Carrier Proteins - genetics | Animals | Apoptosis Regulatory Proteins | Carrier Proteins - metabolism | Cytoskeletal Proteins - immunology | CARD Signaling Adaptor Proteins | Inflammasomes - immunology | Macrophages - drug effects | Nigericin - pharmacology | Bone Marrow Cells - metabolism | Tyrosine - genetics | Cellular signal transduction | Inflammation | Genetic aspects | Research | Properties | Phosphotransferases
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3. Full Text HEXIM1 and NEAT1 Long Non-coding RNA Form a Multi-subunit Complex that Regulates DNA-Mediated Innate Immune Response
by Morchikh, Mehdi and Cribier, Alexandra and Raffel, Raoul and Amraoui, Sonia and Cau, Julien and Severac, Dany and Dubois, Emeric and Schwartz, Olivier and Bennasser, Yamina and Benkirane, Monsef
Molecular Cell, ISSN 1097-2765, 08/2017, Volume 67, Issue 3, pp. 387 - 399.e5
The DNA-mediated innate immune response underpins anti-microbial defenses and certain autoimmune diseases. Here we used immunoprecipitation, mass spectrometry,... 
HEXIM1 | DNA-PK | innate immune response | herpesvirus | paraspeckles | cGAS | NEAT1 | interferon stimulatory DNA | DEFENSE | PROTEIN | INHIBITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | SENSOR | POLYMERASE-II | 7SK RNA | BINDING | GMP-AMP SYNTHASE | P-TEFB | CELL BIOLOGY | Human Umbilical Vein Endothelial Cells - metabolism | Humans | Octamer Transcription Factors - immunology | Intracellular Signaling Peptides and Proteins - metabolism | Herpesvirus 8, Human - immunology | RNA, Long Noncoding - immunology | PTB-Associated Splicing Factor - genetics | RNA Interference | Calcium-Binding Proteins - immunology | Octamer Transcription Factors - genetics | Nucleotidyltransferases - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Signal Transduction | Membrane Proteins - genetics | RNA-Binding Proteins - immunology | PTB-Associated Splicing Factor - metabolism | Nuclear Matrix-Associated Proteins - metabolism | PTB-Associated Splicing Factor - immunology | DNA - metabolism | Host-Pathogen Interactions | Nuclear Matrix-Associated Proteins - genetics | HeLa Cells | RNA-Binding Proteins - metabolism | Calcium-Binding Proteins - genetics | RNA-Binding Proteins - genetics | Multiprotein Complexes | Human Umbilical Vein Endothelial Cells - immunology | Intracellular Signaling Peptides and Proteins - immunology | Human Umbilical Vein Endothelial Cells - virology | Interferon Regulatory Factor-3 - genetics | Ku Autoantigen - genetics | Transfection | HEK293 Cells | Membrane Proteins - metabolism | Nuclear Proteins - genetics | Octamer Transcription Factors - metabolism | Interferon Regulatory Factor-3 - immunology | Calcium-Binding Proteins - metabolism | DNA - immunology | Nuclear Matrix-Associated Proteins - immunology | Ku Autoantigen - immunology | Membrane Proteins - immunology | Nuclear Proteins - metabolism | Ku Autoantigen - metabolism | RNA, Long Noncoding - genetics | Immunity, Innate | Nuclear Proteins - immunology | DNA - genetics | Interferon Regulatory Factor-3 - metabolism | Nucleotidyltransferases - genetics | Protein Binding | Nucleotidyltransferases - immunology | RNA, Long Noncoding - metabolism | RNA sequencing | Immune response | RNA | DNA | Genetic research | Interferon | Biological response modifiers | Mass spectrometry | Human Umbilical Vein Endothelial Cells | Nuclear Matrix-Associated Proteins | Herpesvirus 8, Human | RNA-Binding Proteins | Life Sciences | Interferon Regulatory Factor-3 | Genetics | Calcium-Binding Proteins | Intracellular Signaling Peptides and Proteins | PTB-Associated Splicing Factor | Nuclear Proteins | Membrane Proteins | Nucleotidyltransferases | Ku Autoantigen | Octamer Transcription Factors | RNA, Long Noncoding
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4. Full Text Type I and Type III Interferons Drive Redundant Amplification Loops to Induce a Transcriptional Signature in Influenza-Infected Airway Epithelia
by Crotta, Stefania and Davidson, Sophia and Mahlakoiv, Tanel and Desmet, Christophe J and Buckwalter, Matthew R and Albert, Matthew L and Staeheli, Peter and Wack, Andreas
PLoS Pathogens, ISSN 1553-7366, 11/2013, Volume 9, Issue 11, p. e1003773
Interferons (IFNs) are a group of cytokines with a well-established antiviral function. They can be induced by viral infection, are secreted and bind to... 
CELLS | DEFENSE | VIRUS-INFECTION | DISTINCT | RIG-I | MICROBIOLOGY | IRF-7 | ANTIVIRAL RESPONSE | VIROLOGY | GENE | SIGNALING PATHWAY | ADAPTER PROTEIN | PARASITOLOGY | Epithelial Cells - metabolism | Influenza A virus - genetics | Respiratory Mucosa - virology | Interferon Regulatory Factor-7 - genetics | Interferon Type I - immunology | Interferon Regulatory Factor-3 - genetics | Interleukins - metabolism | Orthomyxoviridae Infections - genetics | Respiratory Mucosa - pathology | Interleukins - genetics | Interleukins - immunology | Respiratory Mucosa - immunology | Adaptor Proteins, Signal Transducing - immunology | Interferon Type I - metabolism | Influenza A virus - immunology | Membrane Proteins - metabolism | Interferon Regulatory Factor-3 - immunology | Nerve Tissue Proteins - immunology | Membrane Proteins - genetics | Orthomyxoviridae Infections - metabolism | Epithelial Cells - pathology | Membrane Proteins - immunology | Interferon Regulatory Factor-7 - immunology | Interferon Regulatory Factor-7 - metabolism | Nerve Tissue Proteins - genetics | Mice, Knockout | Nerve Tissue Proteins - metabolism | Animals | Influenza A virus - metabolism | Epithelial Cells - immunology | Epithelial Cells - virology | Adaptor Proteins, Signal Transducing - genetics | Interferon Regulatory Factor-3 - metabolism | Interferon Type I - genetics | Mice | Respiratory Mucosa - metabolism | Adaptor Proteins, Signal Transducing - metabolism | Orthomyxoviridae Infections - immunology | Epithelial cells | Influenza | Physiological aspects | Host-parasite relationships | Interferon | Genetic aspects | Genetic transcription | Research | Health aspects | Airway (Medicine) | Interleukins/metabolism | Nerve Tissue Proteins/immunology | Orthomyxoviridae Infections/genetics | Orthomyxoviridae Infections/metabolism | Membrane Proteins/genetics | Adaptor Proteins, Signal Transducing/genetics | Interferon Regulatory Factor-7/genetics | Interleukins/immunology | Membrane Proteins/immunology | Life Sciences | Orthomyxoviridae Infections/immunology | Influenza A virus/genetics | Nerve Tissue Proteins/metabolism | Respiratory Mucosa/immunology | Immunology | Interferon Type I/immunology | Epithelial Cells/immunology | Epithelial Cells/virology | Interferon Regulatory Factor-7/immunology | Epithelial Cells/metabolism | Interferon Regulatory Factor-3/immunology | Respiratory Mucosa/pathology | Influenza A virus/immunology | Interleukins/genetics | Interferon Regulatory Factor-3/genetics | Influenza A virus/metabolism | Adaptor Proteins, Signal Transducing/metabolism | Epithelial Cells/pathology | Adaptor Proteins, Signal Transducing/immunology | Interferon Type I/genetics | Interferon Regulatory Factor-3/metabolism | Membrane Proteins/metabolism | Nerve Tissue Proteins/genetics | Interferon Regulatory Factor-7/metabolism | Interferon Type I/metabolism | Respiratory Mucosa/metabolism | Respiratory Mucosa/virology | Cytokines | Genes | Rodents | Genomics | Genomes | Kinases | Experiments | Viral infections
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5. Full Text PML Contributes to a Cellular Mechanism of Repression of Herpes Simplex Virus Type 1 Infection That Is Inactivated by ICP0
by Roger D. Everett and Sabine Rechter and Peer Papior and Nina Tavalai and Thomas Stamminger and Anne Orr
Journal of Virology, ISSN 0022-538X, 08/2006, Volume 80, Issue 16, pp. 7995 - 8005
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
PROMYELOCYTIC LEUKEMIA PROTEIN | ND10 | DOT-ASSOCIATED PROTEINS | DISRUPTION | VIROLOGY | EARLY GENE-EXPRESSION | HOST-CELL | SP100 PROTEINS | REGULATORY PROTEIN | NUCLEAR DOMAIN 10 | IMMEDIATE-EARLY PROTEINS | RNA, Small Interfering - genetics | Autoantigens - metabolism | Nuclear Proteins - analysis | Tumor Suppressor Proteins - antagonists & inhibitors | Antigens, Nuclear - metabolism | Humans | Neoplasm Proteins - physiology | Neoplasm Proteins - antagonists & inhibitors | Immediate-Early Proteins - metabolism | Tumor Suppressor Proteins - genetics | Ubiquitin-Protein Ligases - analysis | Antigens, Nuclear - analysis | Immediate-Early Proteins - analysis | Neoplasm Proteins - genetics | Nuclear Proteins - genetics | Fibroblasts - chemistry | Fibroblasts - metabolism | Autoantigens - analysis | Genome, Viral | Gene Expression | Transcription Factors - physiology | Herpesvirus 1, Human - metabolism | Ubiquitin-Protein Ligases - metabolism | Nuclear Proteins - metabolism | Transcription Factors - antagonists & inhibitors | Transcription Factors - genetics | Adaptor Proteins, Signal Transducing - analysis | Tumor Suppressor Proteins - physiology | Immediate-Early Proteins - genetics | Gene Expression Regulation, Viral | Nuclear Proteins - antagonists & inhibitors | Herpesvirus 1, Human - genetics | Nuclear Proteins - physiology | Adaptor Proteins, Signal Transducing - metabolism | Ubiquitin-Protein Ligases - genetics | Promyelocytic Leukemia Protein | Virus-Cell Interactions
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6. Full Text Caspase-11 stimulates rapid flagellin-independent pyroptosis in response to Legionella pneumophila
by Case, Christopher L and Kohler, Lara J and Lima, Jonilson B and Strowig, Till and de Zoete, Marcel R and Flavell, Richard A and Zamboni, Dario S and Roy, Craig R
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 01/2013, Volume 110, Issue 5, pp. 1851 - 1856
A flagellin-independent caspase-1 activation pathway that does not require NAIP5 or NRLC4 is induced by the intracellular pathogen Legionella pneumophila. Here... 
Cytoskeletal Proteins | Flagellin | Immunoblotting | Legionella pneumophila | Macrophages | Adaptor Proteins, Vesicular Transport | Necrosis | Receptor, Interferon alpha-beta | Caspase 1 | Carrier Proteins | Calcium-Binding Proteins | Cytokines | Mice, Inbred C57BL | Cells, Cultured | Myeloid Differentiation Factor 88 | Mice, Knockout | Host-Pathogen Interactions | Animals | Apoptosis Regulatory Proteins | Bone Marrow Cells | Mice | Caspases | Enzyme Activation | Mutation | Apoptosis | Cell death | Innate immunity | Inflammasome | PATTERN-RECOGNITION | innate immunity | cell death | inflammasome | MULTIDISCIPLINARY SCIENCES | NLRP3 INFLAMMASOME ACTIVATION | INFECTION | RECEPTORS | Cytoskeletal Proteins - genetics | NLR Family, Pyrin Domain-Containing 3 Protein | Adaptor Proteins, Vesicular Transport - genetics | Caspase 1 - metabolism | Legionella pneumophila - genetics | Adaptor Proteins, Vesicular Transport - metabolism | Caspases - metabolism | Flagellin - genetics | Flagellin - metabolism | Apoptosis Regulatory Proteins - genetics | Cytoskeletal Proteins - metabolism | Receptor, Interferon alpha-beta - genetics | Macrophages - microbiology | Receptor, Interferon alpha-beta - metabolism | Calcium-Binding Proteins - metabolism | Cytokines - metabolism | Caspases - genetics | Myeloid Differentiation Factor 88 - genetics | Macrophages - cytology | Legionella pneumophila - metabolism | Apoptosis Regulatory Proteins - metabolism | Carrier Proteins - genetics | Macrophages - metabolism | Carrier Proteins - metabolism | Caspase 1 - genetics | CARD Signaling Adaptor Proteins | Bone Marrow Cells - microbiology | Legionella pneumophila - physiology | Myeloid Differentiation Factor 88 - metabolism | Bone Marrow Cells - metabolism | Calcium-Binding Proteins - genetics | Genetic aspects | Research | Properties | Immunological research | Biological Sciences
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7. Full Text c-Src and c-Abl kinases control hierarchic phosphorylation and function of the CagA effector protein in Western and East Asian Helicobacter pylori strains
by Mueller, Doreen and Tegtmeyer, Nicole and Brandt, Sabine and Yamaoka, Yoshio and De Poire, Eimear and Sgouras, Dionyssios and Wessler, Silja and Torres, Javier and Smolka, Adam and Backert, Steffen
Journal of Clinical Investigation, ISSN 0021-9738, 04/2012, Volume 122, Issue 4, pp. 1553 - 1566
Many bacterial pathogens inject into host cells effector proteins that are substrates for host tyrosine kinases such as Src and Abl family kinases.... 
MEDICINE, RESEARCH & EXPERIMENTAL | ACTIVATION | BACTERIAL PROTEINS | TYROSINE PHOSPHORYLATION | HOST-CELL | BIOLOGICAL-ACTIVITY | IV SECRETION | GASTRIC EPITHELIAL-CELLS | PROCESSIVE PHOSPHORYLATION | PATHOGENICITY ISLAND | SCATTERING | Cell Line - microbiology | Phosphorylation | src-Family Kinases | Helicobacter Infections - ethnology | Protein-Tyrosine Kinases - metabolism | Humans | Bacterial Proteins - chemistry | Far East - epidemiology | Helicobacter pylori - genetics | Molecular Sequence Data | Antigens, Bacterial - genetics | Phosphotyrosine - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Antigens, Bacterial - chemistry | Mutagenesis, Site-Directed | Bacterial Proteins - genetics | Europe - epidemiology | Helicobacter pylori - classification | Amino Acid Motifs | Host-Pathogen Interactions | Sequence Homology, Amino Acid | Sequence Alignment | Helicobacter pylori - metabolism | Proto-Oncogene Proteins c-abl - metabolism | Bacterial Proteins - metabolism | Helicobacter pylori - isolation & purification | Protein Processing, Post-Translational | Antigens, Bacterial - metabolism | Helicobacter Infections - microbiology | Physiological aspects | Research | Helicobacter pylori | Tumor proteins | Health aspects | Protein kinases | Cell Line | Europe | Phosphotyrosine | Antigens, Bacterial | Recombinant Proteins | Helicobacter Infections | Bacterial Proteins | Life Sciences | Microbiology and Parasitology | Proto-Oncogene Proteins c-abl | Protein-Tyrosine Kinases | Far East
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8. Full Text WIPI2 Links LC3 Conjugation with PI3P, Autophagosome Formation, and Pathogen Clearance by Recruiting Atg12–5-16L1
by Dooley, Hannah C and Razi, Minoo and Polson, Hannah E.J and Girardin, Stephen E and Wilson, Michael I and Tooze, Sharon A
Molecular Cell, ISSN 1097-2765, 07/2014, Volume 55, Issue 2, pp. 238 - 252
Mammalian cell homeostasis during starvation depends on initiation of autophagy by endoplasmic reticulum-localized phosphatidylinositol 3-phosphate... 
MAMMALIAN ATG PROTEINS | FORMATION SITE | PHOSPHATIDYLINOSITOL 3-PHOSPHATE | ISOLATION MEMBRANE | BETA-PROPELLER | SALMONELLA-CONTAINING VACUOLE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TARGETING PATHWAY | ENDOPLASMIC-RETICULUM | ULK1 COMPLEX | BINDING-SITES | CELL BIOLOGY | Phagosomes - microbiology | Autophagy-Related Proteins | Phosphatidylinositol Phosphates - metabolism | Microtubule-Associated Proteins - metabolism | Humans | Molecular Sequence Data | Autophagy | Membrane Proteins - physiology | HEK293 Cells | Conserved Sequence | Carrier Proteins - chemistry | Protein Interaction Domains and Motifs | Autophagy-Related Protein 12 | Carrier Proteins - physiology | Amino Acid Sequence | Salmonella typhimurium - physiology | Small Ubiquitin-Related Modifier Proteins - metabolism | Phagosomes - metabolism | Protein Isoforms - physiology | Protein Transport | Host-Pathogen Interactions | Animals | Carrier Proteins - metabolism | Autophagy-Related Protein 5 | Protein Binding | Mice | Protein Processing, Post-Translational | Intracellular Membranes - metabolism | Phagocytosis | Proteins | Phosphates | Starvation | Cells
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9. Full Text Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa
by Sonnleitner, Elisabeth and Wulf, Alexander and Campagne, Sébastien and Pei, Xue-Yuan and Wolfinger, Michael T and Forlani, Giada and Prindl, Konstantin and Abdou, Laetitia and Resch, Armin and Allain, Frederic H -T and Luisi, Ben F and Urlaub, Henning and Bläsi, Udo
Nucleic Acids Research, ISSN 0305-1048, 02/2018, Volume 46, Issue 3, pp. 1470 - 1485
Abstract In Pseudomonas aeruginosa the RNA chaperone Hfq and the catabolite repression control protein (Crc) act as post-transcriptional regulators during... 
POSTTRANSCRIPTIONAL REGULATION | RPOS MESSENGER-RNA | CHAPERONE HFQ | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | CROSS-LINKING | GLOBAL REGULATOR | SOLUBLE-RNA | BINDING | SIGNAL-TRANSDUCTION PATHWAY | MASS-SPECTROMETRY | RNA Prot Comp
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10. Full Text Hfq and its constellation of RNA
by Vogel, Jörg and Luisi, Ben F
Nature Reviews Microbiology, ISSN 1740-1526, 08/2011, Volume 9, Issue 8, pp. 578 - 589
Hfq is an RNA-binding protein that is common to diverse bacterial lineages and has key roles in the control of gene expression. By facilitating the pairing of... 
POLY(A) POLYMERASE I | RPOS MESSENGER-RNA | BACTERIAL SMALL RNA | ESCHERICHIA-COLI-HFQ | PHAGE Q-BETA | DNA-BINDING PROTEINS | 30S RIBOSOMAL-SUBUNIT | MICROBIOLOGY | HOST FACTOR-I | SM-LIKE PROTEIN | SMALL REGULATORY RNA | RNA-Binding Proteins - genetics | Protein Biosynthesis | RNA, Untranslated - metabolism | Protein Multimerization | RNA-Binding Proteins - chemistry | Bacterial Proteins - chemistry | Bacterial Proteins - genetics | Models, Molecular | RNA, Messenger - metabolism | Host Factor 1 Protein - metabolism | Models, Biological | Protein Binding | Bacterial Proteins - metabolism | Gene Expression Regulation, Bacterial | Binding Sites | Host Factor 1 Protein - genetics | RNA-Binding Proteins - metabolism | Host Factor 1 Protein - chemistry | Physiological aspects | Messenger RNA | Research | Binding proteins
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