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hybrid state estimation (40) 40
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1. Full Text Translation at the single-moleeule level
by Marshall, R. Andrew and Aitken, Colin Echeverría and Dorywalska, Magdalena and Puglisi, Joseph D
Annual Review of Biochemistry, ISSN 0066-4154, 2008, Volume 77, pp. 177 - 203
tRNA selection | Ribosome | Optical tweezers | Protein synthesis | FRET | Hybrid state
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2. Full Text Understanding non-classical correlation using optical hybrid states in noisy quantum channels
by Namkung, Min and Kwon, Younghun
Journal of Physics A: Mathematical and Theoretical, ISSN 1751-8113, 10/2018, Volume 51, Issue 45, p. 455302
In this article we investigate the non-classical correlation in a macroscopic physical system. As a tool, we consider an optical hybrid state that is a micro-... 
optical hybrid state | noisy quantum channel | non-classical correlation | PHYSICS, MULTIDISCIPLINARY | ENTANGLEMENT | CRITERION | PHYSICS, MATHEMATICAL
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3. Full Text Elongation Factor G Bound to the Ribosome in an Intermediate State of Translocation
by David S. Tourigny and Israel S. Fernández and Ann C. Kelley and V. Ramakrishnan
Science, ISSN 0036-8075, 6/2013, Volume 340, Issue 6140, pp. 1542 - 1542
A key step of translation by the ribosome is translocation, which involves the movement of messenger RNA (mRNA) and transfer RNA (tRNA) with respect to the... 
Hydrolysis | RESEARCH ARTICLE SUMMARY | Messenger RNA | Molecular structure | Ribosomes | Peptide elongation factors | Hybridity | Transfer RNA | EF-TU | ACTIVATION | HYBRID-STATE | TRANSFER-RNA BINDING | MESSENGER-RNA | BACTERIAL RIBOSOME | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | FACTOR TU | L1 STALK | GTP HYDROLYSIS | Protein Structure, Tertiary | Amino Acid Sequence | Thermus thermophilus - enzymology | Catalytic Domain | Protein Biosynthesis | Guanosine Triphosphate - analogs & derivatives | Ribosomes - chemistry | Molecular Sequence Data | Peptide Elongation Factor G - chemistry | Crystallography, X-Ray | RNA, Messenger - chemistry | RNA, Transfer - chemistry
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4. A hybrid state space modelling study on effects of cultivation management on biological pest control for strawberry plants
by Zamani, I and Hosseini Farahi, M
Acta Horticulturae, ISSN 0567-7572, 04/2017, Volume 1156, pp. 817 - 820
Hybrid state space model | Biological control | Strawberry plants
Conference Proceeding
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5. Full Text Classic and contemporary approaches to modeling biochemical reactions
by Chen, William W and Niepel, Mario and Sorger, Peter K
Genes and Development, ISSN 0890-9369, 09/2010, Volume 24, Issue 17, pp. 1861 - 1875
Recent interest in modeling biochemical networks raises questions about the relationship between often complex mathematical models and familiar arithmetic... 
Signal transduction | Enzyme kinetics | ODE modeling | Systems biology | systems biology | MICHAELIS-MENTEN EQUATION | NETWORK | signal transduction | BAYESIAN PARAMETER-ESTIMATION | HYBRID STATE | DEVELOPMENTAL BIOLOGY | enzyme kinetics | STEADY-STATE APPROXIMATION | CELL BIOLOGY | KINETICS | GENETICS & HEREDITY | SINGLE-MOLECULE LEVEL | DYNAMICS | CELL | Biochemical Phenomena | Kinetics | Models, Biological | Enzymes - metabolism | Review
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6. Full Text Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome
by Fernández, Israel S and Bai, Xiao-Chen and Murshudov, Garib and Scheres, Sjors H.W and Ramakrishnan, V
Cell, ISSN 0092-8674, 05/2014, Volume 157, Issue 4, pp. 823 - 831
The cricket paralysis virus internal ribosome entry site (CrPV-IRES) is a folded structure in a viral mRNA that allows initiation of translation in the absence... 
DENSITY MAPS | HYBRID-STATE | MESSENGER-RNA | ENTRY SITE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | EM STRUCTURE DETERMINATION | CRYO-EM | ELECTRON-MICROSCOPY | TERTIARY STRUCTURE | TRANSFER-RNA DYNAMICS | CELL BIOLOGY | Kluyveromyces - metabolism | Kluyveromyces - chemistry | RNA, Transfer - metabolism | RNA, Messenger - genetics | Ribosomes - chemistry | Models, Molecular | Ribosomes - metabolism | Peptide Chain Initiation, Translational | RNA, Messenger - metabolism | RNA, Messenger - ultrastructure | Dicistroviridae - chemistry | Cryoelectron Microscopy | Ribosomes - ultrastructure | RNA, Viral - chemistry | RNA, Viral - genetics | RNA, Messenger - chemistry | Dicistroviridae - genetics | RNA, Viral - metabolism | RNA, Viral - ultrastructure | Cricket | Paralysis | RNA | Genetic translation
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7. Super-resolution force spectroscopy reveals ribosomal motion at sub-nucleotide steps
by Haina Jia and Yuhong Wang and Shoujun Xu
Chemical Communications : Chem Comm, ISSN 1359-7345, 01/2018, Volume 54, Issue 46, pp. 5883 - 5886
Probing biomolecular motion beyond a single nucleotide is technically challenging but fundamentally significant. We have developed super-resolution force... 
Spectroscopy | Spectrum analysis
Journal Article
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8. A Hybrid State Estimation Algorithm for Transmission System Considering the Short Untransposed Double-circuit Lines
by Liu, Yangsheng and Lin, Jikeng and Dai, Sai and Shen, Danfeng and Guo, Lingxu and Zhang, Yaoxian and Meng, Xianpeng and Qi, Xin
Zhongguo Dianji Gongcheng Xuebao/Proceedings of the Chinese Society of Electrical Engineering, ISSN 0258-8013, 12/2017, Volume 37, Issue 24, pp. 7163 - 7173
Short untransposed double-circuit lines | Reactive power estimation | Hybrid state estimation | Parameter asymmetric
Journal Article
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9. Full Text Crystal Structures of EF-G–Ribosome Complexes Trapped in Intermediate States of Translocation
by Jie Zhou and Laura Lancaster and John Paul Donohue and Harry F. Noller and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Science, ISSN 0036-8075, 6/2013, Volume 340, Issue 6140, pp. 1543 - 1543
Translocation of messenger and transfer RNA (mRNA and tRNA) through the ribosome is a crucial step in protein synthesis, whose mechanism is not yet understood.... 
RESEARCH ARTICLE SUMMARY | Head | Messenger RNA | Ribosomes | Transfer RNA | Crystal structure | ROTATION | HYBRID-STATE | TRANSFER-RNA BINDING | MESSENGER-RNA | BACTERIAL RIBOSOME | GTPASE ACTIVATION | MULTIDISCIPLINARY SCIENCES | ELONGATION-FACTOR-G | MOVEMENT | TRANSLATION | Thermus thermophilus - enzymology | Protein Biosynthesis | Ribosome Subunits, Large, Bacterial - chemistry | Guanosine Triphosphate - analogs & derivatives | Peptide Elongation Factor G - chemistry | Crystallography, X-Ray | Fusidic Acid - chemistry | Protein Conformation | RNA, Messenger - chemistry | Guanosine Triphosphate - chemistry | RNA, Transfer - chemistry | Ribonucleic acid--RNA | Molecular biology | Protein synthesis | Proteins | Frames | Genetic code | Charging | Ribonucleic acids | Decoding | Elongation
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10. Full Text Energy barriers and driving forces in tRNA translocation through the ribosome
by Bock, Lars V and Blau, Christian and Schröder, Gunnar F and Davydov, Iakov I and Fischer, Niels and Stark, Holger and Rodnina, Marina V and Vaiana, Andrea C and Grubmüller, Helmut
Nature Structural and Molecular Biology, ISSN 1545-9993, 12/2013, Volume 20, Issue 12, pp. 1390 - 1396
During protein synthesis, tRNAs move from the ribosome's aminoacyl to peptidyl to exit sites. Here we investigate conformational motions during spontaneous... 
BACTERIAL RIBOSOME | CRYOELECTRON MICROSCOPY | BIOCHEMISTRY & MOLECULAR BIOLOGY | HYBRID STATE | CELL BIOLOGY | BIOPHYSICS | MODELS | MAPS | INTERMEDIATE STATES | MOVEMENT | DYNAMICS | REORGANIZATION | L1 STALK | Cryoelectron Microscopy | Protein Biosynthesis | RNA, Transfer - physiology | Biological Transport | Escherichia coli - genetics | RNA, Transfer - metabolism | Ribosomes - metabolism | Crystallography, X-Ray | Kinetics | Nucleic Acid Conformation | RNA, Transfer - chemistry | Ribosomes - physiology | Research | Translocation (Genetics) | Identification and classification | Transfer RNA | E coli | Ribonucleic acid--RNA | Crystal structure
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11. Full Text Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
by Lareau, Liana F and Hite, Dustin H and Hogan, Gregory J and Brown, Patrick O
eLife, ISSN 2050-084X, 05/2014, Volume 2014, Issue 3, p. e01257
During translation elongation, the ribosome ratchets along its mRNA template, incorporating each new amino acid and translocating from one codon to the next.... 
TRANSLOCATION | ANTIBIOTICS | PROTEIN TRANSLATION | INTERMEDIATE STATES | IN-VIVO | RESOLUTION | BIOLOGY | HYBRID STATE | EUKARYOTIC TRANSLATION | BINDING | SUBUNIT | Saccharomyces cerevisiae - metabolism | Peptide Chain Elongation, Translational | Saccharomyces cerevisiae - genetics | RNA, Messenger - genetics | Ribosomes - chemistry | Ribosomes - metabolism | RNA, Messenger - chemistry | High-Throughput Nucleotide Sequencing | RNA, Messenger - metabolism | Translation | Yeast | Translation elongation | Ribosomes | Amino acids | Footprints | Genomes | mRNA | Nucleotides | Gene expression
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12. Full Text Ribosome structural dynamics in translocation: yet another functional role for ribosomal RNA
by Noller, Harry F and Lancaster, Laura and Mohan, Srividya and Zhou, Jie
Quarterly reviews of biophysics, ISSN 0033-5835, 01/2017, Volume 50, p. e12
Ribosomes are remarkable ribonucleoprotein complexes that are responsible for protein synthesis in all forms of life. They polymerize polypeptide chains... 
HYBRID-STATE | BIOPHYSICS | BACTERIAL RIBOSOME | SINGLE-MOLECULE | INTERMEDIATE STATES | CRYSTAL-STRUCTURE | ELONGATION-FACTOR-G | L1 STALK | EF-G | DECODING CENTER | P-SITES
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13. Full Text Coordinated conformational and compositional dynamics drive ribosome translocation
by Chen, Jin and Petrov, Alexey and Tsai, Albert and O'Leary, Seán E and Puglisi, Joseph D
Nature Structural and Molecular Biology, ISSN 1545-9993, 06/2013, Volume 20, Issue 6, pp. 718 - 727
During translation elongation, the ribosome compositional factors elongation factor G (EF-G; encoded by fusA) and tRNA alternately bind to the ribosome to... 
GTPASE ACTIVITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | ELONGATION-FACTOR-G | MESSENGER-RNA TRANSLOCATION | 70S RIBOSOME | CELL BIOLOGY | HYBRID-STATE | BIOPHYSICS | INTERSUBUNIT ROTATION | INTERMEDIATE STATES | EF-G | SINGLE RIBOSOMES | REAL-TIME | Hydrolysis | Protein Biosynthesis | Models, Biological | RNA, Transfer - metabolism | Escherichia coli - metabolism | Ribosomes - chemistry | Fluorescence Resonance Energy Transfer | Peptide Elongation Factor G - metabolism | Ribosomes - metabolism | Protein Conformation | Guanosine Triphosphate - metabolism | Escherichia coli - chemistry | Molecular dynamics | Research | Translocation (Genetics) | Properties | Ribosomes | Fluorescence | Biosynthesis | E coli | Molecular biology | Ribonucleic acid--RNA
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14. Full Text Analysis of Hybrid State Estimators: Accuracy and Convergence of Estimator Formulations
by Jin, Zhaoyang and Wall, Peter and Chen, Yushou and Yu, James and Chakrabarti, Saikat and Terzija, Vladimir
IEEE Transactions on Power Systems, ISSN 0885-8950, 07/2019, Volume 34, Issue 4, pp. 2565 - 2576
This paper provides a comprehensive analysis of several hybrid state estimators (HSEs) to assess their performance and identify their unique characteristics in... 
PMU placement | Voltage measurement | Power measurement | Current measurement | Estimation accuracy | convergence property | formulation | Phasor measurement units | hybrid state estimator | State estimation | Convergence | state estimation | PHASOR MEASUREMENTS | SYSTEMS | OBSERVABILITY | ENGINEERING, ELECTRICAL & ELECTRONIC
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15. Full Text Coupling of Ribosomal L1 Stalk and tRNA Dynamics during Translation Elongation
by Fei, Jingyi and Kosuri, Pallav and MacDougall, Daniel D and Gonzalez, Ruben L
Molecular Cell, ISSN 1097-2765, 2008, Volume 30, Issue 3, pp. 348 - 359
By using single-molecule fluorescence resonance energy transfer (smFRET), we observe the real-time dynamic coupling between the ribosome, labeled at the L1... 
PROTEINS | ANGSTROM RESOLUTION | TRANSLOCATION | MESSENGER-RNA | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MOVEMENT | HYBRID STATE | INTERMEDIATE | FRET | SUBUNIT | CELL BIOLOGY | Ribosomal Proteins - chemistry | Peptide Chain Elongation, Translational | RNA, Transfer - metabolism | Ribosomal Proteins - genetics | Ribosomes - chemistry | Fluorescent Dyes - metabolism | Models, Molecular | Ribosomes - metabolism | Carbocyanines - metabolism | Ribosomal Proteins - metabolism | Macromolecular Substances - chemistry | Fluorescence Resonance Energy Transfer | Protein Conformation | Nucleic Acid Conformation | RNA, Transfer - chemistry | Macromolecular Substances - metabolism | Proteins | Fluorescence | Genetic translation | Transfer RNA
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16. Full Text Robust Decentralized State Estimation and Tracking for Power Systems via Network Gossiping
by Xiao Li and Scaglione, A
IEEE Journal on Selected Areas in Communications, ISSN 0733-8716, 07/2013, Volume 31, Issue 7, pp. 1184 - 1194
This paper proposes a fully decentralized adaptive re-weighted state estimation (DARSE) scheme for power systems via network gossiping. The enabling technique... 
Maximum likelihood estimation | Power measurement | Voltage measurement | gossiping | convergence | Transmission line measurements | Phasor measurement units | Power systems | Hybrid state estimation | State estimation | TELECOMMUNICATIONS | ENGINEERING, ELECTRICAL & ELECTRONIC | Studies | Operations research | Networks | Algorithms | On-line systems | Mathematical models | Decentralized | Online | Failure
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17. Full Text Dynamic pathways of -1 translational frameshifting
by Chen, Jin and Petrov, Alexey and Johansson, Magnus and Tsai, Albert and O'leary, Seán E and Puglisi, Joseph D
Nature, ISSN 0028-0836, 08/2014, Volume 512, Issue 7514, pp. 328 - 332
Spontaneous changes in the reading frame of translation are rare (frequency of 10(-3) to 10(-4) per codon)(1), but can be induced by specific features in the... 
P-SITE | TRANSLOCATION | TRANSFER-RNA SELECTION | CODON | MESSENGER-RNA | MULTIDISCIPLINARY SCIENCES | SINGLE-MOLECULE FLUORESCENCE | HYBRID STATE | COMPOSITIONAL DYNAMICS | REAL-TIME | RIBOSOME | Ribosome Subunits - chemistry | Peptide Chain Elongation, Translational | DNA Polymerase III - genetics | Escherichia coli | RNA, Messenger - genetics | Bacterial Proteins - genetics | Ribosomes - chemistry | Ribosomes - metabolism | Rotation | Reading Frames - genetics | Frameshifting, Ribosomal | Time Factors | RNA, Transfer, Amino Acyl - metabolism | Peptide Elongation Factor G - metabolism | Codon - genetics | Kinetics | Ribosome Subunits - metabolism | Translation elongation factors | Messenger RNA | Ribosomal RNA | Genetic research | Genetic aspects | Research | Genetic translation | Transfer RNA | Ligands | Peptides | Ribonucleic acid--RNA | Efficiency
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18. Full Text Deep hybrid state network with feature reinforcement for intelligent fault diagnosis of delta 3D printers
by Zhang, Shaohui and Sun, Zhenzhong and Li, Chuan and Cabrera, Diego and Long, Jianyu and Bai, Yun
IEEE Transactions on Industrial Informatics, ISSN 1551-3203, 6/2019, pp. 1 - 1
An echo state network (ESN) is a type of recurrent neural network that is good at processing time-series data with dynamic behavior. However, the use of ESNs... 
Fault diagnosis | Deep learning | Three-dimensional displays | Deep hybrid state network | delta 3D printer | feature reinforcement | Feature extraction | Sensors | Printers | Monitoring
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19. Full Text Programmed –1 Frameshifting by Kinetic Partitioning during Impeded Translocation
by Caliskan, Neva and Katunin, Vladimir I and Belardinelli, Riccardo and Peske, Frank and Rodnina, Marina V
Cell, ISSN 0092-8674, 06/2014, Volume 157, Issue 7, pp. 1619 - 1631
Programmed –1 ribosomal frameshifting (−1PRF) is an mRNA recoding event utilized by cells to enhance the information content of the genome and to regulate gene... 
E-SITE | P-SITE | SIGNAL | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | A-SITE | HYBRID STATE | SINGLE RIBOSOMES |