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1. Full Text DNA sequencing with nanopores
by Schneider, Grégory F and Dekker, Cees
Nature Biotechnology, ISSN 1087-0156, 04/2012, Volume 30, Issue 4, pp. 326 - 328
Major hurdles in the quest to sequence DNA with biological nanopores have now been overcome. 
GRAPHENE | DISCRIMINATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MOLECULES | BASE | High-Throughput Nucleotide Sequencing - methods | Nanopores | High-Throughput Nucleotide Sequencing - instrumentation | Genomics | Nanotechnology
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2. Full Text DNA Sequencing versus Standard Prenatal Aneuploidy Screening
by Bianchi, Diana W and Parker, R. Lamar and Wentworth, Jeffrey and Madankumar, Rajeevi and Saffer, Craig and Das, Anita F and Craig, Joseph A and Chudova, Darya I and Devers, Patricia L and Jones, Keith W and Oliver, Kelly and Rava, Richard P and Sehnert, Amy J and CARE Study Grp and CARE Study Group
The New England Journal of Medicine, ISSN 0028-4793, 02/2014, Volume 370, Issue 9, pp. 799 - 808
Sequencing of fetal DNA in maternal blood to detect trisomies had a significantly lower false positive rate than the standard method of biochemical assay and... 
POPULATION | MEDICINE, GENERAL & INTERNAL | 1ST-TRIMESTER | TRISOMIES 21 | MATERNAL PLASMA | CONFINED PLACENTAL MOSAICISM | EXPERIENCE | TRISOMY-21 | FREE FETAL DNA | CELL-FREE DNA | BLOOD | Chromosomes, Human, Pair 13 - genetics | Plasma | Predictive Value of Tests | Humans | Aneuploidy | False Positive Reactions | Genetic Testing - methods | Chromosome Disorders - diagnosis | Adult | Female | Down Syndrome - diagnosis | Risk Factors | Maternal Serum Screening Tests | Pregnancy | Trisomy - diagnosis | Trisomy - genetics | Nuchal Translucency Measurement | Down Syndrome - genetics | Trisomy 18 Syndrome | Trisomy 13 Syndrome | High-Throughput Nucleotide Sequencing | Chromosomes, Human, Pair 18 - genetics | Prenatal Diagnosis - methods | Sequence Analysis, DNA - methods | Chromosome Disorders - genetics | Usage | Prenatal diagnosis | Nucleotide sequencing | Comparative analysis | Methods | DNA sequencing | Trisomy | Genetic disorders | Risk groups | Fetuses | Karyotypes | Prenatal development | Patau's syndrome | Medical screening | Deoxyribonucleic acid--DNA
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3. Full Text DNA sequencing technologies: 2006-2016
by Mardis, Elaine R
Nature Protocols, ISSN 1754-2189, 02/2017, Volume 12, Issue 2, pp. 213 - 218
Recent advances in the field of genomics have largely been due to the ability to sequence DNA at increasing throughput and decreasing cost. DNA sequencing was... 
MISMATCH-REPAIR DEFICIENCY | GENETIC-VARIATION | HYBRID SELECTION | ACCURATE | HUMAN GENOME | CHROMATIN | PD-1 BLOCKADE | BIOCHEMICAL RESEARCH METHODS | IDENTIFICATION | CANCER | LONG | DNA - genetics | Animals | Humans | DNA - biosynthesis | High-Throughput Nucleotide Sequencing | Statistics as Topic | Sequence Analysis, DNA - methods | Innovations | Nucleotide sequencing | DNA sequencing
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4. Full Text The sequence of sequencers: The history of sequencing DNA
by Heather, James M and Chain, Benjamin
Genomics, ISSN 0888-7543, 01/2016, Volume 107, Issue 1, pp. 1 - 8
Determining the order of nucleic acid residues in biological samples is an integral component of a wide variety of research applications. Over the last fifty... 
Sequencer | RNA | History | Sequencing | DNA | SINGLE-MOLECULE | INFORMATION | POLYMERASE | GENOME | OLIGONUCLEOTIDES | TECHNOLOGIES | TERMINATORS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | ENZYMATIC AMPLIFICATION | GENERATION | NUCLEOTIDE-SEQUENCE | History, 21st Century | Nanotechnology - methods | History, 20th Century | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | High-Throughput Nucleotide Sequencing - history | Sequence Analysis, DNA - history | Genomics | Review
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5. Full Text Genome-Wide Fetal Aneuploidy Detection by Maternal Plasma DNA Sequencing
by Bianchi, Diana W and Platt, Lawrence D and Goldberg, James D and Abuhamad, Alfred Z and Sehnert, Amy J and Rava, Richard P and MatErnal BLood IS Source Accuratel and MatErnal BLood IS Source to Accurately diagnose fetal aneuploidy (MELISSA) Study Group
Obstetrics & Gynecology, ISSN 0029-7844, 05/2012, Volume 119, Issue 5, pp. 890 - 901
OBJECTIVE:To prospectively determine the diagnostic accuracy of massively parallel sequencing to detect whole chromosome fetal aneuploidy from maternal plasma.... 
NONINVASIVE PRENATAL-DIAGNOSIS | OBSTETRICS & GYNECOLOGY | Single-Blind Method | Chromosome Disorders - blood | Prospective Studies | Humans | Middle Aged | Aneuploidy | Male | Sequence Analysis, DNA | Case-Control Studies | Pregnancy | Young Adult | Karyotyping | Sensitivity and Specificity | Adolescent | Chromosome Disorders - diagnosis | Adult | Female | High-Throughput Nucleotide Sequencing | Prenatal Diagnosis - methods | Chromosome Disorders - genetics
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6. Full Text DNA sequencing data analysis
by Long, Keyi and Cai, Lei and He, Lin
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1754, pp. 1 - 13
Among various biological data, DNA sequence is doubtlessly a fundamental datum. By obtaining particular DNA sequence data and analyzing, biologists get to... 
DNA sequence | Sequence comparison | Data analysis | Methods and tools | DNA sequencing | Sequence Analysis, DNA - instrumentation | Base Sequence - genetics | Computational Biology - methods | Algorithms | Computational Biology - instrumentation | Data Analysis | Software | High-Throughput Nucleotide Sequencing - instrumentation | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods
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7. Full Text A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
by Prum, Richard O and Berv, Jacob S and Dornburg, Alex and Field, Daniel J and Townsend, Jeffrey P and Lemmon, Emily Moriarty and Lemmon, Alan R
Nature, ISSN 0028-0836, 10/2015, Volume 526, Issue 7574, pp. 569 - 573
Although reconstruction of the phylogeny of living birds has progressed tremendously in the last decade, the evolutionary history of Neoaves-a clade that... 
FOSSIL CALIBRATIONS | RATES | DIVERSIFICATION | RELAXED PHYLOGENETICS | MULTIDISCIPLINARY SCIENCES | MOLECULAR EVOLUTION | TREE | SPECIES DIVERGENCE TIMES | EVOLUTIONARY HISTORY | INFORMATIVENESS | LIFE | Genomics | Birds - classification | Extinction, Biological | Phylogeny | Sequence Analysis, DNA | Paleontology | Likelihood Functions | Animals | Bayes Theorem | High-Throughput Nucleotide Sequencing | Alligators and Crocodiles - genetics | Birds - genetics | Evolution, Molecular | Birds | Genetic aspects | Nucleotide sequencing | Observations | Methods | DNA sequencing | Evolution | Taxonomy | Genes
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8. Full Text High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing
by Dianne I. Lou and Jeffrey A. Hussmann and Ross M. McBee and Ashley Acevedo and Raul Andino and William H. Press and Sara L. Sawyer
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2013, Volume 110, Issue 49, pp. 19872 - 19877
A major limitation of high-throughput DNA sequencing is the high rate of erroneous base calls produced. For instance, Illumina sequencing machines produce... 
Circles | Production efficiency | Error rates | Molecules | Consensus sequence | DNA | Libraries | Genomes | Sequencing | Genetic mutation | Next-Generation sequencing | Barcoding | Rare variants | rare variants | barcoding | next-generation sequencing | RARE MUTATIONS | MULTIDISCIPLINARY SCIENCES | PARALLEL | DNA, Circular - genetics | Computational Biology - methods | Gene Library | High-Throughput Nucleotide Sequencing - methods | Research Design | Biological Sciences
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9. Full Text DNA sequencing clinical applications of new DNA sequencing technologies
by Dewey, Frederick E and Pan, Stephen and Wheeler, Matthew T and Quake, Stephen R and Ashley, Euan A
Circulation, ISSN 0009-7322, 02/2012, Volume 125, Issue 7, pp. 931 - 944
Genome | Genetic variation | Sequencing | DNA polymorphism | CARDIAC & CARDIOVASCULAR SYSTEMS | MENTAL-RETARDATION | SINGLE-MOLECULE | genetic variation | sequencing | genome | HIGH-RISK | PERIPHERAL VASCULAR DISEASE | MUTATIONS | COPY NUMBER VARIATION | NUCLEOTIDE-RESOLUTION | STRUCTURAL VARIATION | PROTEIN FUNCTION | GENOME-WIDE ASSOCIATION | READ DEPTH | Genetic Variation | Humans | Genotype | High-Throughput Nucleotide Sequencing | Polymorphism, Single Nucleotide | Genome, Human | Sequence Analysis, DNA - methods | Quality Control | Usage | Nucleotide sequencing | Innovations | DNA sequencing
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10. Full Text CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing
by Talevich, Eric and Shain, A. Hunter and Botton, Thomas and Bastian, Boris C
PLoS Computational Biology, ISSN 1553-734X, 04/2016, Volume 12, Issue 4, p. e1004873
Germline copy number variants (CNVs) and somatic copy number alterations (SCNAs) are of significant importance in syndromic conditions and cancer. Massively... 
ACCURATE | AMPLIFICATION | VARIANTS | BIAS | MUTATION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SEGMENTATION | HYBRIDIZATION | CANCER | DISCOVERY | TOOLS | Humans | Computational Biology | In Situ Hybridization, Fluorescence - statistics & numerical data | Sequence Analysis, DNA - statistics & numerical data | Software | Genome-Wide Association Study - statistics & numerical data | Genome, Human | High-Throughput Nucleotide Sequencing - statistics & numerical data | Comparative Genomic Hybridization - statistics & numerical data | DNA Copy Number Variations | Analysis | Genomics | DNA | Cytogenetics | Genomes | Nucleotide sequencing | DNA sequencing | Genetic code | Genome-wide association studies | Observations | Methods | Software packages | Pipelines | Bias | Hybridization | Gene expression | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid
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11. Full Text FACETS: Allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
by Shen, Ronglai and Seshan, Venkatraman E
Nucleic Acids Research, ISSN 0305-1048, 09/2016, Volume 44, Issue 16, pp. e131 - e131
Allele-specific copy number analysis (ASCN) from next generation sequencing (NGS) data can greatly extend the utility of NGS beyond the identification of... 
TUMOR SAMPLES | ABERRATIONS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | Lung Neoplasms - genetics | Adenocarcinoma of Lung | Humans | DNA Copy Number Variations - genetics | Gene Dosage | Sequence Analysis, DNA | Genetic Heterogeneity | Loss of Heterozygosity - genetics | Exome - genetics | Algorithms | Alleles | Adenocarcinoma - genetics | Clone Cells | High-Throughput Nucleotide Sequencing - methods | Databases, Nucleic Acid | Methods Online
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12. Full Text Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
by Rohland, Nadin and Reich, David
Genome Research, ISSN 1088-9051, 05/2012, Volume 22, Issue 5, pp. 939 - 946
Improvements in technology have reduced the cost of DNA sequencing to the point that the limiting factor for many experiments is the time and reagent cost of... 
FULLY AUTOMATED PROCESS | GENOMIC ENRICHMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONSTRUCTION | GENETICS & HEREDITY | SELECTION | DISCOVERY | Genome, Bacterial | Prostatic Neoplasms - genetics | Gene Library | Escherichia coli - genetics | Cost-Benefit Analysis | Humans | DNA Probes - chemistry | Male | Genome, Human | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA | DNA Cleavage | Genomes | Genetic aspects | Research | Prostate cancer | DNA | Method
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13. Full Text Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing
by Smith, Dylan P and Peay, Kabir G
PLoS ONE, ISSN 1932-6203, 02/2014, Volume 9, Issue 2, p. e90234
Recent advances in molecular approaches and DNA sequencing have greatly progressed the field of ecology and allowed for the study of complex communities in... 
PATTERNS | DIVERSITY | COMMUNITIES | REVEAL | FUNGAL | MULTIDISCIPLINARY SCIENCES | Trees | DNA, Fungal - genetics | Fungi - classification | Soil Microbiology | Ecosystem | Polymerase Chain Reaction | DNA, Fungal - isolation & purification | Phylogeny | Pinus | High-Throughput Nucleotide Sequencing - methods | High-Throughput Nucleotide Sequencing - statistics & numerical data | Fungi - genetics | Nucleotide sequencing | DNA | DNA sequencing | Biological diversity | Community ecology | Integrated software | Nucleotide sequence | Data processing | Inference | Ecology | Biodiversity | Gene sequencing | Polymerase chain reaction | Studies | Fungi | Ecological effects | Sample variance | Replicating | Soil microorganisms | Technology | Pine | Replication | Ecological monitoring | Genetic testing | Bioinformatics | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid
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