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Journal Article
Cancer discovery, ISSN 2159-8274, 7/2013, Volume 3, Issue 7
The survival of patients with oral squamous cell carcinoma (OSCC) has not changed significantly in several decades, leading clinicians and investigators to... 
head and neck | oral cancers | NOTCH1 | CASP8 | Integrated genomics
Journal Article
by Hoadley, Katherine A and Yau, Christina and Hinoue, Toshinori and Wolf, Denise M and Wolf, Gregory and Lazar, Alexander J and Drill, Esther and Shen, Ronglai and Shen, Hui and Taylor, Alison M and Taylor, Barry S and Cherniack, Andrew D and Thorsson, Vesteinn and Thorsson, Vésteinn and Akbani, Rehan and Bowlby, Reanne and Wong, Tina and Wong, Christopher K and Wiznerowicz, Maciej and Sanchez-Vega, Francisco and Robertson, A. Gordon and Schneider, Barbara G and Lawrence, Michael S and Noushmehr, Houtan and Malta, Tathiane M and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jing and Wang, Linghua and Wang, Timothy and Wang, Min and Wang, Jioajiao and Wang, Zhining and Yang, Liming and Yang, Ju Dong and Yang, Ian and Yang, Hannah and Zenklusen, Jean C and Zhang, Hailei and Zhang, Wei and Zhang, Jiashan (Julia) and Zhang, Lizhi and Zhang, Jiexin and Zhang, Hongxin and Zhang, Hongzheng and Chudamani, Sudha and Liu, Wenbin and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Sun, Yichao and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Miller, Judy and Miller, Christopher A and Reynolds, Sheila and Shmulevich, Ilya and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Li, Wei and Li, Jun and Liang, Han and Ling, Shiyun and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and ... and Cancer Genome Atlas Network
Cell, ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 291 - 304.e6
Journal Article
Science, ISSN 0036-8075, 09/2018, Volume 361, Issue 6409, p. 1324
Chen et al. (Reports, 17 February 2017, p. 752) highlight an important problem of sequencing artifacts caused by DNA damage at the time of sample processing.... 
LANDSCAPE | INTEGRATED GENOMIC CHARACTERIZATION | MULTIDISCIPLINARY SCIENCES | Causes of | Nucleotide sequencing | Analysis | DNA damage | DNA sequencing | Genomics | DNA
Journal Article
Nature Reviews Cancer, ISSN 1474-175X, 2016, Volume 16, Issue 2, pp. 83 - 98
Journal Article
Methods in molecular biology (Clifton, N.J.), ISSN 1064-3745, 2019, Volume 1869, pp. 37 - 56
Genomics has significantly advanced our knowledge of the biology of brain tumors, and refined our classification over the past 10 years. These advances have... 
Pathway analysis | RNA sequencing | Copy number analysis | FFPE tissue | Hybridization | Integrated analysis | DNA methylation profiling | CpG sites
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 08/2018, Volume 46, Issue 14, pp. 7022 - 7039
Abstract DNA methylation is an epigenetic mechanism known to affect gene expression and aberrant DNA methylation patterns have been described in cancer.... 
INTEGRATED GENOMIC CHARACTERIZATION | CANCER GENETICS | CHROMATIN | COMPREHENSIVE MOLECULAR CHARACTERIZATION | LANDSCAPE | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROMOTER HYPOMETHYLATION | PATTERNS | INVASIVE BREAST | DOMAINS | REVEALS | Computational Biology
Journal Article
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, pp. 1077 - 14
Journal Article
NATURE COMMUNICATIONS, ISSN 2041-1723, 08/2019, Volume 10, Issue 1, pp. 3574 - 11
Cancer cell lines are a cornerstone of cancer research but previous studies have shown that not all cell lines are equal in their ability to model primary... 
PATHWAYS | INTEGRATED GENOMIC CHARACTERIZATION | ADENOCARCINOMA | MULTIDISCIPLINARY SCIENCES | CONSENSUS MOLECULAR SUBTYPES | CLASSIFICATION | HEDGEHOG | Cell culture | Biotechnology | Transcription | Correlation analysis | Pancreatic cancer | Encyclopedias | Cell lines | Genomes | Tumor cell lines | Cancer | Tumors
Journal Article
by Guo, J and Huang, J and Zhou, Y and Yu, L and Li, H and Hou, L and Zhu, L and Ge, D and Zeng, Y and Guleng, B and Li, Q
BMC GENOMICS, ISSN 1471-2164, 07/2018, Volume 19
Background: Esophageal squamous cell carcinomas (ESCC) is the fourth most lethal cancer in China. Previous studies reveal several highly conserved mutational... 
MOLECULAR CHARACTERIZATION | Mutational signature | LANDSCAPE | Genetic burden | IDENTIFICATION | BREAST-CANCER | HETEROGENEITY | Esophageal squamous cell carcinomas | INTEGRATED GENOMIC CHARACTERIZATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CDC27 | GENES | GENETICS & HEREDITY | WHOLE-EXOME | EXPRESSION | ASSOCIATION | ZNF750
Journal Article
by Kim, HK and Lee, I and Lee, J and Chang, HS and Soh, EY and Park, IS and Kim, JH and Rho, YS and Lee, DJ
HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK, ISSN 1043-3074, 08/2018, Volume 40, Issue 8, pp. 1707 - 1718
BackgroundUsing a large set of genomic data from The Cancer Genome Atlas (TCGA), we classified BRAF(wild) papillary thyroid carcinomas (PTCs) into 2 subtypes... 
UNITED-STATES | SURGERY | DIAGNOSIS | COMPREHENSIVE MOLECULAR CHARACTERIZATION | thyroid cancer | PREVALENCE | The Cancer Genome Atlas (TCGA) | CANCER | TUMORS | BRAF mutation | molecular subtypes | INTEGRATED GENOMIC CHARACTERIZATION | RAS MUTATIONS | OTORHINOLARYNGOLOGY | prediction | FOLLICULAR VARIANT
Journal Article