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1. Full Text DNA methylation and exposure to ambient air pollution in two prospective cohorts
by Plusquin, Michelle and Guida, Florence and Polidoro, Silvia and Vermeulen, Roel and Raaschou-Nielsen, Ole and Campanella, Gianluca and Hoek, Gerard and Kyrtopoulos, Soterios A and Georgiadis, Panagiotis and Naccarati, Alessio and Sacerdote, Carlotta and Krogh, Vittorio and Bas Bueno-de-Mesquita, H and Monique Verschuren, W.M and Sayols-Baixeras, Sergi and Panni, Tommaso and Peters, Annette and Hebels, Dennie G.A.J and Kleinjans, Jos and Vineis, Paolo and Chadeau-Hyam, Marc
Environment international, ISSN 0160-4120, 11/2017, Volume 108, pp. 127 - 136
Air pollution | EPIC | Particulate matter | NOx | Illumina 450 k human methylation array | Epigenome-wide DNA methylation | ESCAPE PROJECT | GENE-SPECIFIC METHYLATION | USE REGRESSION-MODELS | MARKERS | PERIPHERAL-BLOOD | SMOKING | LUNG-CANCER | CARCINOGENESIS | EXPRESSION | ASSOCIATION | Environmental Sciences & Ecology | Life Sciences & Biomedicine | Science & Technology | Environmental Sciences | Air Pollutants - analysis | Gene Expression | Genome-Wide Association Study | Epigenomics | Prospective Studies | Air Pollutants - pharmacology | Humans | Middle Aged | European Continental Ancestry Group | Male | Environmental Exposure - analysis | Particulate Matter - analysis | Soot - analysis | Female | Air Pollution - analysis | Cardiovascular Diseases - chemically induced | DNA Methylation - drug effects | Cohort Studies | Analysis | Genes | Genomics | DNA | Genetic research | Respiratory tract diseases | Genomes | Pollutants | Methylation | Gene expression | Environmental aspects | Index Medicus | Metilació | Aire | Contaminació | Illumina 450k human methylation array | Aspectes sanitaris | NO(x) | ADN | EpWAS, epigenome-wide association study | PMcoarse, particulate matter with a diameter smaller than 10 μm and bigger than 2.5 μm | Illumina 450 k human methylation array | LUMA, luminometric methylation assay | EPIC-NL, The Dutch part of the European Prospective Investigation into Cancer and Nutrition | PM2.5, particulate matter with a diameter smaller than 2.5 μm | NOx, nitrogen oxide | EPIC-Italy, The Italian part of the European Prospective Investigation into Cancer and Nutrition | LC-MS, liquid chromatography–mass spectrometry | ELISA, enzyme-linked immunosorbent assay | PM2.5abs, absorbance of the PM2.5 filter, a measure for soot | PM, particulate matter | HPLC, high-performance liquid chromatography | PM10, particulate matter with a diameter smaller than 10 μm | LINE1, long interspersed nuclear elements | CpG, 5′–C–phosphate–G–3′, a cytosine and guanine separated by one phosphate | ESCAPE, European Study of Cohorts for Air Pollution Effects | CPMA, cross-phenotype meta-analysis | NO2, nitrogen dioxide
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2. Full Text Night sky brightness simulation over Montsec protected area
by Linares, Hector and Masana, Eduard and Ribas, Salvador J and Aubé, Martin and Simoneau, Alexandre and Bará, Salvador
Journal of quantitative spectroscopy & radiative transfer, ISSN 0022-4073, 07/2020, Volume 249, p. 106990
Psf | Modelling | Light pollution | Illumina
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3. Full Text RELIC: A novel dye-bias correction method for Illumina Methylation BeadChip
by Xu, Zongli and Langie, Sabine A.S and De Boever, Patrick and Taylor, Jack A and Niu, Liang
BMC genomics, ISSN 1471-2164, 01/2017, Volume 18, Issue 1, pp. 4 - 4
DNA methylation | Dye-bias correction | Illumina MethylationEPIC | Data preprocessing | Illumina HumanMethylation450 | RELIC | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Computational Biology - methods | DNA Methylation | Reproducibility of Results | Datasets as Topic | Oligonucleotide Array Sequence Analysis - standards | Oligonucleotide Array Sequence Analysis - methods | Humans | Software | Computational Biology - standards | High-Throughput Nucleotide Sequencing - methods | Web Browser | High-Throughput Nucleotide Sequencing - standards | Methylation | DNA microarrays | Research | Dyes | Websites | DNA probes | Laboratories | Bias | Fluorescent dyes | Fluorescent indicators | Datasets | Ratios | Quality control | HyperText Markup Language | Arrays | Probes | Deoxyribonucleic acid--DNA | Methods | CpG islands | Index Medicus
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4. Full Text High-throughput minitaturized rna-seq library preparation
by Mildrum, Samuel and Hendricks, Austin and Stortchevoi, Alexei and Kamelamela, Noelani and Butty, Vincent L and Levine, Stuart S
Journal of biomolecular techniques, ISSN 1524-0215, 2020, Volume 31, Issue 4, pp. 151 - 156
Illumina | Sequencing | Automation | Index Medicus | Sequencing, automation, Illumina | Communication
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5. Full Text Nitrogen inputs are more important than denitrifier abundances in controlling denitrification-derived N 2 O emission from both urban and agricultural soils
by Xu, Hui-Juan and Yang, Xiao-Ru and Li, Shun and Xue, Xi-Mei and Chang, Shuai and Li, Hu and Singh, Brajesh K and Su, Jian-Qiang and Zhu, Yong-Guan
The Science of the total environment, ISSN 0048-9697, 02/2019, Volume 650, Issue Pt 2, pp. 2807 - 2817
Denitrifier | Denitrification | Urbanization | Nitrous oxide | Illumina sequencing
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6. Full Text Host ecology rather than host phylogeny drives amphibian skin microbial community structure in the biodiversity hotspot of Madagascar
by Bletz, Molly C and Archer, Holly and Harris, Reid N and McKenzie, Valerie J and Rabemananjara, Falitiana C.E and Rakotoarison, Andolalao and Vences, Miguel
Frontiers in microbiology, ISSN 1664-302X, 08/2017, Volume 8, pp. 1 - 14
Bacteria | 16S rRNA illumina sequencing | Community assembly | Amphibians | Host-associated microbiota | Life Sciences & Biomedicine | Microbiology | Science & Technology | host-associated microbiota | bacteria | community assembly | amphibians
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7. Full Text De novo identification of differentially methylated regions in the human genome
by Peters, Timothy J and Buckley, Michael J and Statham, Aaron L and Pidsley, Ruth and Samaras, Katherine and V Lord, Reginald and Clark, Susan J and Molloy, Peter L
Epigenetics & chromatin, ISSN 1756-8935, 01/2015, Volume 8, Issue 1, pp. 6 - 6
Differential DNA methylation | Illumina | Kernel smoothing | Epigenetic inheritance | Sulfites | Human genome | Analysis | Genomics | Rankings | Methylation | Biotechnology industry
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8. Full Text An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
by Blanc-Mathieu, Romain and Verhelst, Bram and Derelle, Evelyne and Rombauts, Stephane and Bouget, François-Yves and Carré, Isabelle and Château, Annie and Eyre-Walker, Adam and Grimsley, Nigel and Moreau, Hervé and Piégu, Benoit and Rivals, Eric and Schackwitz, Wendy and Van de Peer, Yves and Piganeau, Gwenaël
BMC genomics, ISSN 1471-2164, 12/2014, Volume 15, Issue 1, pp. 1103 - 1103
Domestication of microalgae | Correctness of short reads assembly | Plant glutamate receptor | Illumina re-sequencing | Ostreococcus tauri | Genome evolution | Picoeukaryote | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genetic Variation | Chlorophyta - genetics | Genomics | Molecular Sequence Annotation | Computational Biology | Molecular Sequence Data | High-Throughput Nucleotide Sequencing | Genome, Plant | Evolution, Molecular | RNA sequencing | Genes | Models | Research | Glutamate | Photosynthesis | Biological diversity | Index Medicus | Life Sciences | Biotechnology | Other
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9. Full Text Three years of biochar amendment alters soil physiochemical properties and fungal community composition in a black soil of northeast China
by Yao, Qin and Liu, Junjie and Yu, Zhenhua and Li, Yansheng and Jin, Jian and Liu, Xiaobing and Wang, Guanghua
Soil biology & biochemistry, ISSN 0038-0717, 07/2017, Volume 110, pp. 56 - 67
Fungal ITS sequence | Mollisols | Biochar | Illumina MiSeq sequencing | Fungal diversity | Soil Science | Agriculture | Life Sciences & Biomedicine | Science & Technology | Soil acidity | Soil moisture | Soil structure | Biological diversity
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10. Full Text Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities
by Pinto-Figueroa, Eric Alejandro and Seddon, Emily and Yashiro, Erika and Buri, Aline and Niculita-Hirzel, Helene and van der Meer, Jan Roelof and Guisan, Antoine
Frontiers in microbiology, ISSN 1664-302X, 04/2019, Volume 10, pp. 656 - 656
Life Sciences & Biomedicine | Microbiology | Science & Technology | Environmental aspects | Soils | Ascomycota | Fungi | Usage | Research | Nucleotide sequencing | DNA sequencing | network analysis | Archaeorhizomyces | correlation analyses | abiotic and biotic requirements | fungi | Illumina sequencing
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