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1. Full Text Discovery of Salmonella trehalose phospholipids reveals functional convergence with mycobacteria
by Reinink, Peter and Buter, Jeffrey and Mishra, Vivek K and Ishikawa, Eri and Cheng, Tan Yun and Willemsen, Peter T.J and Porwollik, Steffen and Brennan, Patrick J and Heinz, Eva and Mayfield, Jacob A and Dougan, Gordon and Els, van, Cécile A and Cerundolo, Vincenzo and Napolitani, Giorgio and Yamasaki, Sho and Minnaard, Aiaan J and McClelland, Michael and Moody, D.B and Rhijn, Van, Ildiko
Journal of Experimental Medicine, ISSN 0022-1007, 2019, Volume 216, Issue 4, pp. 757 - 771
Salmonella species are among the world's most prevalent pathogens. Because the cell wall interfaces with the host, we designed a lipidomics approach to reveal... 
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2. Full Text Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences
by Verstappen, Koen M and Huijbregts, Loes and Spaninks, Mirlin and Wagenaar, Jaap A and Fluit, Ad C and Duim, Birgitta
PLoS ONE, ISSN 1932-6203, 2017, Volume 12, Issue 8
Staphylococcus pseudintermedius is an opportunistic pathogen in dogs and cats and occasionally causes infections in humans. S. pseudintermedius is often... 
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3. Full Text Raw pet food as a risk factor for shedding of extended-spectrum beta-lactamase-producing Enterobacteriaceae in household cats
by Baede, Valérie O and Broens, Els M and Spaninks, Mirlin P and Timmerman, Arjen J and Graveland, Haitske and Wagenaar, Jaap A and Duim, Birgitta and Hordijk, Joost
PLoS ONE, ISSN 1932-6203, 2017, Volume 12, Issue 11
Background: Close contact between pets and owners provides the opportunity for transmission of antimicrobial resistant organisms like extended-spectrum... 
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4. Full Text Zoonotic transmission of mcr-1 colistin resistance gene from small-scale poultry farms, Vietnam
by Trung, Nguyen Vinh and Matamoros, Sébastien and Carrique-Mas, Juan J and Nghia, Nguyen Huu and Nhung, Nguyen Thi and Chieu, Tran Thi Bich and Mai, Ho Huynh and Rooijen, van, Willemien and Campbell, James and Wagenaar, Jaap A and Hardon, Anita and Mai, Nguyen Thi Nhu and Hieu, Thai Quoc and Thwaites, Guy and Jong, de, Menno D and Schultsz, Constance and Hoa, Ngo Thi
Emerging Infectious Diseases, ISSN 1080-6040, 2017, Volume 23, Issue 3, pp. 529 - 532
We investigated the consequences of colistin use in backyard chicken farms in Vietnam by examining the prevalence of mcr-1 in fecal samples from chickens and... 
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5. Full Text A communal catalogue reveals Earth's multiscale microbial diversity
by Thompson, Luke R and Sanders, Jon G and McDonald, Daniel and Amir, Amnon and Ladau, Joshua and Locey, Kenneth J and Prill, Robert J and Tripathi, Anupriya and Gibbons, Sean M and Ackermann, Gail and Navas-Molina, Jose A and Janssen, Stefan and Kopylova, Evguenia and Vazquez-Baeza, Yoshiki and Gonzalez, Antonio and Morton, James T and Mirarab, Siavash and Xu, Zhenjiang Zech and Jiang, Lingjing and Haroon, Mohamed F and Kanbar, Jad and Zhu, Qiyun and Song, Se Jin and Kosciolek, Tomasz and Bokulich, Nicholas A and Lefler, Joshua and Brislawn, Colin J and Humphrey, Gregory and Owens, Sarah M and Hampton-Marcell, Jarrad and Berg-Lyons, Donna and McKenzie, Valerie and Fierer, Noah and Fuhrman, Jed A and Clauset, Aaron and Stevens, Rick L and Shade, Ashley and Pollard, Katherine S and Goodwin, Kelly D and Jansson, Janet K and Gilbert, Jack A and Knight, Rob and Ibanez-Alamo, Juan Diego and Jurburg, Stephanie D and Earth Microbiome Project Consortiu and Earth Microbiome Project Consortium and Naturvetenskapliga fakulteten and Faculty of Sciences and Göteborgs universitet and Gothenburg University and Institutionen för marina vetenskaper and Department of marine sciences
Nature, ISSN 0028-0836, 11/2017, Volume 551, Issue 7681, pp. 457 - +
Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite... 
CONSISTENT | ARCHAEAL | EVOLUTION | MARINE BACTERIAL | GLOBAL PATTERNS | BACTERIAL DIVERSITY | OPERON COPY NUMBER | ONTOLOGY | COMMUNITIES | NESTEDNESS | MULTIDISCIPLINARY SCIENCES | Humans | RNA, Ribosomal, 16S - analysis | Geographic Mapping | Plants - microbiology | Gene Dosage | Archaea - isolation & purification | Biodiversity | Bacteria - genetics | Bacteria - isolation & purification | Ecology - methods | Animals | Microbiota - genetics | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Earth (Planet) | Environmental aspects | Observations | Microbial colonies | Biological diversity | Analytical methods | Nucleotide sequence | Microbiology | Taxonomy | rRNA | Ecology | Genomes | Gene sequencing | Meta-analysis | Earth | Studies | Microorganisms | Ribonucleic acids | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | DNA sequencing | Geosciences, Multidisciplinary | Climate Research | Klimatforskning | Oceanografi, hydrologi, vattenresurser | Oceanography, Hydrology, Water Resources | Annan geovetenskap och miljövetenskap | Multidisciplinär geovetenskap | Ekologi | Other Earth and Related Environmental Sciences | CVI Infection Biology | CVI Infectiebiologie | Food Quality and Design | VLAG | Infectiebiologie | Infection Biology
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6. Full Text Changes in the population of methicillin-resistant Staphylococcus pseudintermedius and dissemination of antimicrobial-resistant phenotypes in the Netherlands
by Duim, Birgitta and Verstappen, Koen M and Broens, E.M and Laarhoven, Laura M and Duijkeren, Van, Engeline and Hordijk, Joost and Heus, De, Phebe and Spaninks, Mirlin and Timmerman, Arjen J and Wagenaar, J.A
Journal of Clinical Microbiology, ISSN 0095-1137, 2016, Volume 54, Issue 2, pp. 283 - 288
Methicillin-resistant Staphylococcus pseudintermedius (MRSP), which is often multidrug resistant (MDR), has recently emerged as a threat to canine health... 
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7. Full Text The effectiveness of bacteriophages against methicillin-resistant Staphylococcus aureus ST398 nasal colonization in pigs
by Verstappen, Koen M and Tulinski, Pawel and Duim, Birgitta and Fluit, Ad C and Carney, Jennifer and Nes, Van, Arie and Wagenaar, Jaap A
PLoS ONE, ISSN 1932-6203, 2016, Volume 11, Issue 8
Methicillin-resistant Staphylococcus aureus (MRSA) is an important colonizer in animals and an opportunistic pathogen in humans. In humans, MRSA can cause... 
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8. Full Text Chicken immune response after in ovo Immunization with Chimeric TLR5 activating flagellin of campylobacter jejuni
by Radomska, Katarzyna A and Vaezirad, Mahdi M and Verstappen, Koen M and Wösten, Marc M.S.M and Wagenaar, Jaap A and Putten, van, Jos P.M
PLoS ONE, ISSN 1932-6203, 2016, Volume 11, Issue 10
Campylobacter jejuni is the main cause of bacterial food-borne diseases in developed countries. Chickens are the most important source of human infection.... 
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9. Full Text Feedback control of Campylobacter jejuni flagellin levels through reciprocal binding of FliW to flagellin and the global regulator CsrA
by Radomska, Katarzyna A and Ordoñez, Soledad R and Wösten, Marc M.S.M and Wagenaar, Jaap A and Putten, van, Jos P.M
Molecular Microbiology, ISSN 0950-382X, 2016, Volume 102, Issue 2, pp. 207 - 220
Bacterial flagella assembly is tightly regulated to ensure a timely and sequential production of the various flagellum constituents. In the pathogen... 
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10. Full Text Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host
by Gilbert, Maarten J and Duim, Birgitta and Timmerman, Arjen J and Zomer, Aldert L and Wagenaar, Jaap A
Scientific Reports, ISSN 2045-2322, 2017, Volume 7
Reptiles have been shown to host a significant Helicobacter diversity. In order to survive, reptile-associated Helicobacter lineages need to be adapted to the... 
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11. Full Text Identification of LukPQ, a novel, equid-adapted leukocidin of Staphylococcus aureus
by Koop, Gerrit and Vrieling, Manouk and Storisteanu, Daniel M.L and Lok, Laurence S.C and Monie, Tom and Wigcheren, Van, Glenn and Raisen, Claire and Ba, Xiaoliang and Gleadall, Nicholas and Hadjirin, Nazreen and Wagenaar, Jaap A
Scientific Reports, ISSN 2045-2322, 2017, Volume 7
Bicomponent pore-forming leukocidins are a family of potent toxins secreted by Staphylococcus aureus, which target white blood cells preferentially and consist... 
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12. Full Text Four types of scrapie in goats differentiated from each other and bovine spongiform encephalopathy by biochemical methods
by Langeveld, J.P.M and Pirisinu, L and Jacobs, J.G and Mazza, M and Lantier, Isabelle and Simon, Stephanie and Anèoletti, Olivier and Acin, C and Esposito, E and Fast, C and Groschup, Martin H and Goldmann, Wilfred and Spiropoulos, J and Sklaviadis, Theodoros and Lantier, F and Ekateriniadou, Loukia V and Papasavva-Stylianou, P and Keulen, van, L.J.M and Acutis, Pier Luigi and Agrimi, U and Bossers, A and Nonno, Romolo
Veterinary Research, ISSN 0928-4249, 2019, Volume 50, Issue 1, pp. 97 - 13
Scrapie in goats has been known since 1942, the archetype of prion diseases in which only prion protein (PrP) in misfolded state (PrPSc) acts as infectious... 
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13. Full Text Clonal expansion of a virulent Streptococcus suis serotype 9 lineage distinguishable from carriage subpopulations
by Willemse, Niels and Ark, van der, Kees C.H and Stockhofe-Zurwieden, Norbert and Smith, Hilde and Picavet, Daisy I and Solt-Smits, van, Conny and Wisselink, Henk J and Schultsz, Constance and Greeff, de, Astrid
Scientific Reports, ISSN 2045-2322, 2019, Volume 9, Issue 1
Streptococcus suis is a porcine pathogen, causing severe invasive infections. S. suis serotype 9 is increasingly causing disease in Dutch and Chinese pig... 
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14. Full Text Explanatory Variables Associated with Campylobacter and Escherichia coli Concentrations on Broiler Chicken Carcasses during Processing in Two Slaughterhouses
by Pacholewicz, Ewa and Swart, Arno and Wagenaar, Jaap A and Lipman, Len J.A and Havelaar, Arie H
Journal of Food Protection, ISSN 0362-028X, 2016, Volume 79, Issue 12, pp. 2038 - 2047
This study aimed at identifying explanatory variables that were associated with Campylobacter and Escherichia coli concentrations throughout processing in two... 
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15. Full Text Effect of Q211 and K222 PRNP polymorphic variants in the susceptibility of goats to oral infections with Goat Bovine Spongiform Encephalopathy
by Aguilar-Calvo, Patricia and Fast, C and Tauscher, Kerstin and Espinosa, J.C and Groschup, M.H and Muhammad, Nadeem and Goldmann, W and Langeveld, J.P.M and Bossers, A and Aneoletti, O
The Journal of Infectious Diseases, ISSN 0022-1899, 2015, Volume 212, Issue 4, pp. 664 - 672
Background. The prion protein-encoding gene (PRNP) is one of the major determinants for scrapie occurrence in sheep and goats. However, its effect on bovine... 
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16. Full Text What is the origin of livestock-associated methicillin-resistant Staphylococcus aureus clonal complex 398 isolates from humans without livestock contact? An epidemiological and genetic analysis
by Lekkerkerk, W.S.N and Wamel, Van, W.J.B and Snijders, S.V and Willems, R.J and Duijkeren, Van, E and Broens, E.M and Wagenaar, J.A and Lindsay, J.A and Vos, M.C
Journal of Clinical Microbiology, ISSN 0095-1137, 2015, Volume 53, Issue 6, pp. 1836 - 1841
Fifteen percent of all methicillin-resistant Staphylococcus aureus (MRSA) clonal complex 398 (CC398) human carriers detected in The Netherlands had not been in... 
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17. Full Text Livestock-associated MRSA in household members of pig farmers : Transmission and dynamics of carriage, a prospective cohort study
by Cleef, Van, B.A.G.L and Benthem, Van, B.H.B and Verkade, E.J.M and Rijen, Van, M.M.L and Kluytmans-Van Den Bergh, M.F.Q and Graveland, Haitske and Bosch, Thijs and Verstappen, K.M.H.W and Wagenaar, J.A and Bos, M.E.H and Heederik, Dick and Kluytmans, J.A.J.W
PLoS ONE, ISSN 1932-6203, 2015, Volume 10, Issue 5
This prospective cohort study describes carriage of livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) in household members from 49... 
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18. Full Text Reptile Toll-like receptor 5 unveils adaptive evolution of bacterial flagellin recognition
by Voogdt, Carlos G.P and Bouwman, Lieneke I and Kik, Marja J.L and Wagenaar, Jaap A and Putten, Van, Jos P.M
Scientific Reports, ISSN 2045-2322, 2016, Volume 6
Toll-like receptors (TLR) are ancient innate immune receptors crucial for immune homeostasis and protection against infection. TLRs are present in mammals,... 
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19. Full Text An emerging zoonotic clone in the Netherlands provides clues to virulence and zoonotic potential of Streptococcus suis
by Willemse, N and Howell, K.J and Weinert, L.A and Heuvelink, A and Pannekoek, Y and Wagenaar, J.A and Smith, H.E and Ende, Van Der, A and Schultsz, C
Scientific Reports, ISSN 2045-2322, 2016, Volume 6
Streptococcus suis is a zoonotic swine pathogen and a major public health concern in Asia, where it emerged as an important cause of bacterial meningitis in... 
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20. Full Text Enteropathogen infections in canine puppies: (Co-)occurrence, clinical relevance and risk factors
by Duijvestijn, Mirjam and Mughini-gras, Lapo and Schuurman, Nancy and Schijf, Wim and Wagenaar, Jaap A and Egberink, Herman
Veterinary Microbiology, ISSN 0378-1135, 2016, Volume 195, pp. 115 - 122
Laboratory confirmation of the causative agent(s) of diarrhoea in puppies may allow for appropriate treatment. The presence of potential pathogens however,... 
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