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1. Full Text Recombination‐dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure
by Ruhlman, Tracey A and Zhang, Jin and Blazier, John C and Sabir, Jamal S. M and Jansen, Robert K
American journal of botany, ISSN 0002-9122, 04/2017, Volume 104, Issue 4, pp. 559 - 572
replication | RDR | ptDNA | recombination | unit‐genome | chloroplast | plastome | inverted repeats | Geraniaceae | Inverted repeats | Plastome | Recombination | Unit-genome | Replication | Chloroplast | PtDNA | Life Sciences & Biomedicine | Plant Sciences | Science & Technology | Gene Conversion - genetics | Repetitive Sequences, Nucleic Acid - genetics | Genome, Plastid - genetics | Geraniaceae - genetics | Sequence Alignment | Genome, Plant - genetics | DNA Replication - genetics | Recombination, Genetic - genetics | Research | Nucleotides | Gene expression | Plastids | Genomics | Plastomes | Nucleotide sequence | Genes | Inversion | Genomes | Conversion | Isomers | Gene sequencing | Botany | Gene mapping | Gene conversion | Assembly | DNA sequencing | Index Medicus
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2. Full Text MITE-Hunter: A program for discovering miniature inverted-repeat transposable elements from genomic sequences
by Han, Yujun and Wessler, Susan R
Nucleic acids research, ISSN 0305-1048, 12/2010, Volume 38, Issue 22, pp. e199 - e199
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | DNA, Plant - chemistry | Oryza - genetics | Software | Genome, Plant | Genomics - methods | DNA Transposable Elements | Inverted Repeat Sequences | Index Medicus | Methods Online
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3. Full Text Palindrome analyser – A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences
by Brázda, Václav and Kolomazník, Jan and Lýsek, Jiří and Hároníková, Lucia and Coufal, Jan and Št'astný, Jiří
Biochemical and biophysical research communications, ISSN 0006-291X, 09/2016, Volume 478, Issue 4, pp. 1739 - 1745
Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Inverted Repeat Sequences - genetics | Oligonucleotides - genetics | Computational Biology - methods | Reproducibility of Results | Viruses - genetics | Oligonucleotides - analysis | Genome, Viral - genetics | DNA, Viral - analysis | DNA - genetics | Viruses - classification | Genome, Bacterial - genetics | DNA, Bacterial - genetics | DNA - analysis | Escherichia coli - genetics | Base Sequence | DNA, Cruciform - analysis | DNA, Bacterial - analysis | Internet | DNA, Viral - genetics | DNA, Cruciform - genetics | Nervous system diseases | RNA | Developmental biology | Analysis | Genomics | File servers | Genomes | Protein binding | Index Medicus
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4. Full Text RepEx: Repeat extractor for biological sequences
by Gurusaran, M and Ravella, Dheeraj and Sekar, K
Genomics (San Diego, Calif.), ISSN 0888-7543, 10/2013, Volume 102, Issue 4, pp. 403 - 408
Inverted repeat sequences | Software | Genome | Amino acid repeat sequence | Palindromic repeat sequences | Repetitive sequences | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Amino Acid Sequence | Computational Biology - methods | Repetitive Sequences, Amino Acid | Reproducibility of Results | Base Sequence | Humans | Molecular Sequence Data | Tandem Repeat Sequences | Inverted Repeat Sequences | Case studies | Genomics | Genomes | Index Medicus
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5. Full Text Genome plasticity in Candida albicans is driven by long repeat sequences
by Todd, Robert T and Wikoff, Tyler D and Forche, Anja and Selmecki, Anna
eLife, ISSN 2050-084X, 06/2019, Volume 8
Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Candida albicans - genetics | Genome, Fungal | Recombination, Genetic | Gene Rearrangement | Adaptation, Biological | Repetitive Sequences, Nucleic Acid | Loss of Heterozygosity | Chromosome Inversion | DNA Copy Number Variations | Drug resistance in microorganisms | Genomics | Genomes | Recombination | Yeast | Nucleotide sequence | Copy number | Virulence | Genes | Ribosomal DNA | Homology | Drug resistance | DNA repair | Heterozygosity | Fungi | Proteins | Loss of heterozygosity | Evolution | Chromosomes | Deoxyribonucleic acid--DNA | Index Medicus
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6. Full Text DNA repeat sequences: diversity and versatility of functions
by Qian, Zhong and Adhya, Sankar
Current genetics, ISSN 0172-8083, 06/2017, Volume 63, Issue 3, pp. 411 - 416
BIME | naRNA | Repeat DNA sequence | REP | Palindromic units | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genetic Variation | Inverted Repeat Sequences - genetics | Repetitive Sequences, Nucleic Acid - genetics | Base Sequence - genetics | Genome, Bacterial | Bacteria - genetics | Evolution, Molecular | Evolution | Nucleotide sequencing | Molecular biology | DNA | DNA sequencing | Deoxyribonucleic acid--DNA | Index Medicus
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7. Full Text Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences
by Beck, Izaak N and Usher, Ben and Hampton, Hannah G and Fineran, Peter C and Blower, Tim R
Biochemical journal, ISSN 0264-6021, 06/2020, Volume 477, Issue 12, pp. 2401 - 2419
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Promoter Regions, Genetic | Operon | Bacterial Proteins - chemistry | Bacterial Proteins - genetics | Homeostasis | Models, Molecular | DNA-Binding Proteins - genetics | Streptococcus agalactiae - growth & development | Bacterial Toxins - chemistry | Streptococcus agalactiae - metabolism | DNA-Binding Proteins - metabolism | Streptococcus agalactiae - genetics | Bacterial Toxins - metabolism | Toxin-Antitoxin Systems - genetics | Bacterial Proteins - metabolism | Bacterial Toxins - genetics | Protein Conformation | Antitoxins - metabolism | Gene Expression Regulation, Bacterial | Mycobacterium tuberculosis - metabolism | Antitoxins - genetics | Inverted Repeat Sequences | Mycobacterium tuberculosis - genetics | Mycobacterium tuberculosis - growth & development | Index Medicus | toxin-antitoxin system | co-operativity | Microbiology | Mycobacterium tuberculosis | regulation | transcription | Structural Biology | Gene Expression & Regulation
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8. Full Text The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms
by Ma, Ji and Yang, Bingxian and Zhu, Wei and Sun, Lianli and Tian, Jingkui and Wang, Xumin
Gene, ISSN 0378-1119, 10/2013, Volume 528, Issue 2, pp. 120 - 131
IR expansion | RNA editing | Molecular dating | Mahonia bealei | Chloroplast | SSRs | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genes, Plant | RNA Editing | Molecular Sequence Annotation | Genome, Chloroplast | Phylogeny | Sequence Analysis, DNA | Polymorphism, Genetic | DNA Repeat Expansion | Mahonia - genetics | Likelihood Functions | Codon | Base Sequence | Genetic Speciation | Models, Genetic | Inverted Repeat Sequences | Evolution, Molecular | Expressed Sequence Tags | Genetic research | Genetic aspects | Genomes | RNA | Analysis | Genomics | Index Medicus
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9. Full Text The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species
by Zhang, Yanzhen and Ma, Ji and Yang, Bingxian and Li, Ruyi and Zhu, Wei and Sun, Lianli and Tian, Jingkui and Zhang, Lin
Gene, ISSN 0378-1119, 05/2014, Volume 540, Issue 2, pp. 201 - 209
Large inversion | IR loss | Chloroplast genome | Taxus chinensis var. mairei | SSRs | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Inverted Repeat Sequences - genetics | Ribosomal Proteins - chemistry | Amino Acid Sequence | Genes, Plant | Ribosomal Proteins - genetics | Molecular Sequence Annotation | Genome, Chloroplast | DNA, Chloroplast - genetics | Molecular Sequence Data | Sequence Analysis, DNA | Sequence Homology, Nucleic Acid | Plant Proteins - genetics | Plant Proteins - chemistry | Base Sequence | Taxus - genetics | Codon - genetics | Gene Order | Microsatellite Repeats | Chemotherapy | Analysis | Genomics | Plant genetics | Genetic research | Genetic aspects | Genomes | Cancer | Index Medicus
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