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1. Full Text Recombination‐dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure
by Ruhlman, Tracey A and Zhang, Jin and Blazier, John C and Sabir, Jamal S. M and Jansen, Robert K
American Journal of Botany, ISSN 0002-9122, 04/2017, Volume 104, Issue 4, pp. 559 - 572
PREMISE OF THE STUDY: There is a misinterpretation in the literature regarding the variable orientation of the small single copy region of plastid genomes... 
replication | RDR | ptDNA | recombination | unit‐genome | chloroplast | plastome | inverted repeats | Geraniaceae | Inverted repeats | Plastome | Recombination | Unit-genome | Replication | Chloroplast | PtDNA | HORIZONTAL TRANSFER | COMPLETE CHLOROPLAST GENOME | ANCIENT EVOLUTIONARY SPLIT | INVERTED REPEAT | unit-genome | DNA-REPLICATION | PLANT SCIENCES | LAND PLANTS | MESSENGER-RNA | HIGHER-PLANTS | MEDICAGO-TRUNCATULA | SUBSTITUTION RATES | Gene Conversion - genetics | Repetitive Sequences, Nucleic Acid - genetics | Genome, Plastid - genetics | Geraniaceae - genetics | Sequence Alignment | Genome, Plant - genetics | DNA Replication - genetics | Recombination, Genetic - genetics | Research | Nucleotides | Gene expression | Plastids | Genomics
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2. Full Text DNA repeat sequences: diversity and versatility of functions
by Qian, Zhong and Adhya, Sankar
Current Genetics, ISSN 0172-8083, 06/2017, Volume 63, Issue 3, pp. 411 - 416
Although discovered decades ago, the molecular identification, the diversity and versatility of functions, and the evolutionary origin of repeat DNA sequences... 
BIME | naRNA | Repeat DNA sequence | REP | Palindromic units | PROTEIN | ESCHERICHIA-COLI | TRANSCRIPTION | MOSAIC ELEMENTS BIMES | GENOME | E. COLI | EXTRAGENIC PALINDROMIC SEQUENCES | IMMUNE-SYSTEM | GENETICS & HEREDITY | GENE-EXPRESSION | REPETITIVE DNA | Genetic Variation | Inverted Repeat Sequences - genetics | Repetitive Sequences, Nucleic Acid - genetics | Base Sequence - genetics | Genome, Bacterial | Bacteria - genetics | Evolution, Molecular | Evolution | Nucleotide sequencing | Molecular biology | DNA | DNA sequencing | Deoxyribonucleic acid--DNA
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3. Full Text Genome plasticity in Candida albicans is driven by long repeat sequences
by Todd, RT and Wikoff, TD and Forche, A and Selmecki, A
ELIFE, ISSN 2050-084X, 06/2019, Volume 8
Genome rearrangements resulting in copy number variation (CNV) and loss of heterozygosity (LOH) are frequently observed during the somatic evolution of cancer... 
YEAST | ANEUPLOIDY | EVOLUTION | TANDEM REPEATS | GENE DUPLICATION | BIOLOGY | REPETITIVE SEQUENCES | HOMOLOGOUS RECOMBINATION | SACCHAROMYCES-CEREVISIAE | FUNCTIONAL DIVERGENCE | BROKEN ENDS | Drug resistance in microorganisms | Genomics | Genomes | Recombination | Yeast | Nucleotide sequence | Copy number | Virulence | Genes | Ribosomal DNA | Homology | Drug resistance | DNA repair | Heterozygosity | Fungi | Proteins | Loss of heterozygosity | Evolution | Chromosomes | Deoxyribonucleic acid--DNA
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4. Full Text Impact of small repeat sequences on bacterial genome evolution
by Delihas, Nicholas
Genome Biology and Evolution, ISSN 1759-6653, 2011, Volume 3, Issue 1, pp. 959 - 973
Intergenic regions of prokaryotic genomes carry multiple copies of terminal inverted repeat (TIR) sequences, the nonautonomous miniature inverted-repeat... 
CRISPR | MITE | Nonautonomous transposable elements | Genome evolution | REP | DNA repeat sequences | LYME-DISEASE SPIROCHETE | DNA INSERTION SEQUENCES | BORRELIA-BURGDORFERI | TRANSPOSABLE ELEMENT | ESCHERICHIA-COLI | NEISSERIA-MENINGITIDIS | genome evolution | FUNCTIONAL-PROPERTIES | BACILLUS-CEREUS GROUP | EVOLUTIONARY BIOLOGY | EXTRAGENIC PALINDROMIC SEQUENCES | nonautonomous transposable elements | STREPTOCOCCUS-PNEUMONIAE | GENETICS & HEREDITY | Inverted Repeat Sequences - genetics | Genome, Bacterial - genetics | Base Sequence | DNA Transposable Elements - genetics | Molecular Sequence Data | Molecular Structure | Open Reading Frames - genetics | Bacteria - genetics | RNA, Untranslated - genetics | Terminal Repeat Sequences - genetics | Evolution, Molecular | RNA - genetics
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5. Full Text A strong structural correlation between short inverted repeat sequences and the polyadenylation signal in yeast and nucleosome exclusion by these inverted repeats
by Miura, Osamu and Ogake, Toshihiro and Yoneyama, Hiroki and Kikuchi, Yo and Ohyama, Takashi
Current Genetics, ISSN 0172-8083, 4/2019, Volume 65, Issue 2, pp. 575 - 590
DNA sequences that read the same from 5′ to 3′ in either strand are called inverted repeat sequences or simply IRs. They are found throughout a wide variety of... 
Life Sciences | Biochemistry, general | IR map | 3′-Untranslated region | Inverted repeat (IR) | Microbiology | Yeast genome | Microbial Genetics and Genomics | Proteomics | Nucleosome exclusion | Plant Sciences | Cell Biology | ALTERED DNA | 3-Untranslated region | TRANSCRIPTION | SUPERCOILED DNA | DNA STRUCTURES | HAIRPIN FORMATION | PREFERENTIAL BINDING | HUMAN GENOME | GENETICS & HEREDITY | PROMOTER | CRUCIFORM FORMATION | G-QUADRUPLEX | Gene Expression Regulation, Fungal | Chromatin - metabolism | Computational Biology - methods | Molecular Sequence Annotation | Nucleosomes - metabolism | Yeasts - genetics | Genome, Fungal | Polyadenylation | Protein Binding | 3' Untranslated Regions | Genomics - methods | Chromatin - genetics | Inverted Repeat Sequences | Yeasts - metabolism | Physiological aspects | Nucleosomes | Genetic aspects | Research | Yeast fungi | Enrichment | Poly(A) | Chromatin | Yeast | Statistical analysis | Transcription | TPA | Nucleotide sequence | Prokaryotes | Inverted repeat | Escherichia coli | Genomes | Saccharomyces | Ribonucleic acid--RNA | Gene sequencing | Eukaryotes | Codons | Saccharomyces cerevisiae | Deoxyribonucleic acid--DNA | Original
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6. Full Text Requirement or exclusion of inverted repeat sequences with cruciform-forming potential in Escherichia coli revealed by genome-wide analyses
by Miura, Osamu and Ogake, Toshihiro and Ohyama, Takashi
Current Genetics, ISSN 0172-8083, 8/2018, Volume 64, Issue 4, pp. 945 - 958
Inverted repeat (IR) sequences are DNA sequences that read the same from 5′ to 3′ in each strand. Some IRs can form cruciforms under the stress of negative... 
Life Sciences | Biochemistry, general | Microbiology | Microbial Genetics and Genomics | Proteomics | Inverted repeat (IR) sequence | Genome-wide distribution | Plant Sciences | E. coli | Intrinsic terminator | Cell Biology | Cruciform | ALTERED DNA | TRANSCRIPTION TERMINATION | SACCHAROMYCES-CEREVISIAE | CANCER GENOMES | SUPERCOILED DNA | DNA STRUCTURES | HAIRPIN FORMATION | PREFERENTIAL BINDING | GENETIC INSTABILITY | GENETICS & HEREDITY | DIETHYL PYROCARBONATE | Codon | Analysis | Escherichia coli | Genomics | Genetic aspects | Nucleotide sequencing | Genetic translation | DNA sequencing | Depth indicators | Nucleotide sequence | Inverted repeat | Stop codon | Forming | Supercoiling | Genomes | Regulatory sequences | Cruciform tests | Gene sequencing | Transcription termination | E coli | Spacer | Translation termination | Bacteria | Codons | Transcription initiation | Deoxyribonucleic acid--DNA | Original
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7. Full Text The Repeat Sequences and Elevated Substitution Rates of the Chloroplast & IT;accD & IT; Gene in Cupressophytes
by Li, J and Su, YJ and Wang, T
FRONTIERS IN PLANT SCIENCE, ISSN 1664-462X, 04/2018, Volume 9
The plastid accD gene encodes a subunit of the acetyl-CoA carboxylase (ACCase) enzyme. The length of accD gene has been supposed to expand in Cryptomeria... 
DOUGLAS-FIR | cupressophytes | ACETYL-COA CARBOXYLASE | INVERTED REPEAT | accD | PLANT SCIENCES | repeat sequences | NUCLEOTIDE SUBSTITUTIONS | TRANSFER-RNA GENES | GENOME SEQUENCE | EVOLUTION | PLASTID GENOME | TANDEM REPEATS | substitution rates | CODON USAGE | rearrangement
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8. Full Text Correction to: Requirement or exclusion of inverted repeat sequences with cruciform-forming potential in Escherichia coli revealed by genome-wide analyses
by Miura, Osamu and Ogake, Toshihiro and Ohyama, Takashi
Current Genetics, ISSN 0172-8083, 10/2018, Volume 64, Issue 5, pp. 1171 - 1171
The article ‘Requirement or exclusion of inverted repeat sequences with cruciform-forming potential in Escherichia coli revealed by genome-wide analyses'... 
Life Sciences | Biochemistry, general | Microbiology | Microbial Genetics and Genomics | Proteomics | Plant Sciences | Cell Biology | Genetic aspects | Analysis | Escherichia coli | Genomics | Biomedical engineering | E coli | Inverted repeat | Bacteria | Forming | Genomes | Cruciform tests | Gene sequencing
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9. Full Text RepEx: A web server to extract sequence repeats from protein and DNA sequences
by Michael, Daliah and Gurusaran, M and Santhosh, R and Hussain, Md. Khaja and Satheesh, S.N and Suhan, S and Sivaranjan, P and Jaiswal, Akanksha and Sekar, K
Computational Biology and Chemistry, ISSN 1476-9271, 02/2019, Volume 78, pp. 424 - 430
Evolution builds up new genetic material from existing ones, not in random, but in highly ordered and eloquent patterns. Most of these sequence repeats are... 
DNA repeats | Inverted repeats | Palindrome | Identical repeat sequences | Similar repeats | Repeat sequences | Protein repeats | GLUTAMINE | ALGORITHM | IDENTIFICATION | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | EVOLUTION | INTERNAL REPEATS | TANDEM REPEATS | EXPANSION | GENES | BIOLOGY | FIND | MUTATIONS | DNA - genetics | Proteins - genetics | Amino Acid Sequence | User-Computer Interface | Software | Internet | Microsatellite Repeats - genetics | Proteins | Genomics | DNA | File servers | Genomes | Nucleotide sequencing | DNA sequencing
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10. Full Text Low Temperature-Responsive Changes in the Anther Transcriptome's Repeat Sequences Are Indicative of Stress Sensitivity and Pollen Sterility in Rice Strains
by Seiya Ishiguro and Kei Ogasawara and Kaien Fujino and Yutaka Sato and Yuji Kishima
Plant Physiology, ISSN 0032-0889, 2/2014, Volume 164, Issue 2, pp. 671 - 682
Genome-wide transcriptome analyses using microarray probes containing genes and repeat sequences have been performed to examine responses to low temperatures... 
Transcriptomes | Transposons | RNA | Genes | Anthers | Pollen | Genomes | Plants | ECOPHYSIOLOGY AND SUSTAINABILITY | Rice | Low temperature | ORYZA-SATIVA L | QUANTITATIVE TRAIT LOCI | GENE-EXPRESSION | JAPONICA RICE | EPIGENETIC REGULATION | CONTROLLING COLD-TOLERANCE | TRANSPOSABLE ELEMENTS MITES | BOOTING STAGE | SALT TOLERANCE | GENOME | PLANT SCIENCES | Repetitive Sequences, Nucleic Acid - genetics | Cold Temperature | Reproducibility of Results | Oligonucleotide Array Sequence Analysis | Stress, Physiological - genetics | RNA, Messenger - genetics | Oryza - physiology | Transcriptome - genetics | RNA, Messenger - metabolism | Plant Infertility - genetics | Oryza - genetics | Plant Leaves - genetics | Genes, Plant - genetics | Pollen - genetics | DNA Transposable Elements - genetics | Gene Expression Regulation, Plant | Transcription, Genetic | Real-Time Polymerase Chain Reaction | Inverted Repeat Sequences | DNA microarrays | Analysis | Genomics | Genetic transcription | Instrument industry
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11. Full Text Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
by Ekaterina Semenova and Matthijs M. Jore and Kirill A. Datsenko and Anna Semenova and Edze R. Westra and Barry Wanner and John van der Oost and Stan J. J. Brouns and Konstantin Severinov
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2011, Volume 108, Issue 25, pp. 10098 - 10103
Prokaryotic clustered regularly interspaced short palindromic repeat (CRISPR)/Cas (CRISPR-associated sequences) systems provide adaptive immunity against... 
Bacteriophages | RNA | Plasmids | DNA | Bacteriophage M13 | Point mutation | Genomes | Infections | Lawns | Genetic mutation | Bacteriophage | Small RNA | RNA interference | DEFENSE | RECOGNITION | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | small RNA | IDENTIFICATION | CLEAVAGE | ARCHAEON | bacteriophage | IMMUNE-SYSTEM | PROKARYOTES | Viruses - genetics | Escherichia coli - immunology | Models, Molecular | Molecular Sequence Data | Escherichia coli Proteins - metabolism | Viruses - immunology | RNA - genetics | DNA, Viral - immunology | Macromolecular Substances - chemistry | Escherichia coli - genetics | Base Sequence | Escherichia coli Proteins - genetics | Mutation | DNA, Viral - genetics | Inverted Repeat Sequences | Macromolecular Substances - metabolism | RNA - metabolism | Genetic aspects | Gene mutations | Identification and classification | Biological Sciences | cleavage | identification | prokaryotes | defense | dna | archaeon | escherichia-coli | recognition | immune-system
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12. Full Text Use of Clustered Regularly Interspaced Short Palindromic Repeat Sequence Polymorphisms for Specific Detection of Enterohemorrhagic Escherichia coli Strains of Serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by Real-Time PCR
by Sabine Delannoy and Lothar Beutin and Patrick Fach
Journal of Clinical Microbiology, ISSN 0095-1137, 12/2012, Volume 50, Issue 12, pp. 4035 - 4040
Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
MICROBIOLOGY | HEMOLYTIC-UREMIC SYNDROME | TOXIN | GENES | FOOD | STOOLS | Enterohemorrhagic Escherichia coli - genetics | Bacteriological Techniques - methods | Humans | Real-Time Polymerase Chain Reaction - methods | Enterohemorrhagic Escherichia coli - classification | Escherichia coli Infections - microbiology | Molecular Sequence Data | DNA, Bacterial - chemistry | Sequence Analysis, DNA | Genetic Variation | Animals | DNA, Bacterial - genetics | Enterohemorrhagic Escherichia coli - isolation & purification | Sensitivity and Specificity | Inverted Repeat Sequences | Bacteriology
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13. Full Text The impact of CRISPR repeat sequence on structures of a Cas6 protein–RNA complex
by Wang, Ruiying and Zheng, Han and Preamplume, Gan and Shao, Yaming and Li, Hong
Protein Science, ISSN 0961-8368, 03/2012, Volume 21, Issue 3, pp. 405 - 417
The repeat‐associated mysterious proteins (RAMPs) comprise the most abundant family of proteins involved in prokaryotic immunity against invading genetic... 
CRISPR‐Cas | RAMP proteins | RRM fold | protein–RNA interactions | RNA‐mediated prokaryotic immunity | CRISPR-Cas | RNA-mediated prokaryotic immunity | Protein-RNA interactions | DEFENSE | BACTERIA | RECOGNITION MOTIF | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROVIDES ACQUIRED-RESISTANCE | protein-RNA interactions | CLEAVAGE | IMMUNE-SYSTEM | ARCHAEA | DNA | ENDORIBONUCLEASE | PROKARYOTES | Archaeal Proteins - metabolism | Pyrococcus furiosus - chemistry | Pyrococcus horikoshii - chemistry | Base Sequence | Archaeal Proteins - chemistry | Inverted Repeat Sequences - physiology | Models, Molecular | Pyrococcus horikoshii - immunology | RNA - chemistry | Pyrococcus furiosus - immunology | RNA - metabolism | Proteins
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